Wall clock time and date at job start Tue Mar 31 2020 11:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47399 * 2 1 4 4 C 1.46844 * 111.00088 * 66.04496 * 3 2 1 5 5 C 1.53035 * 109.52625 * 174.16301 * 4 3 2 6 6 C 1.53124 * 109.27889 * 59.17739 * 5 4 3 7 7 H 1.08999 * 109.51483 * 62.31829 * 6 5 4 8 8 N 1.46893 * 109.52221 * 182.44293 * 6 5 4 9 9 C 1.46902 * 111.00113 * 175.92094 * 8 6 5 10 10 C 1.46907 * 111.00221 * 299.87336 * 8 6 5 11 11 C 1.50700 * 109.47130 * 170.00119 * 10 8 6 12 12 C 1.38641 * 119.74829 * 269.73361 * 11 10 8 13 13 C 1.37615 * 120.24262 * 179.72528 * 12 11 10 14 14 C 1.40716 * 119.75062 * 0.52198 * 13 12 11 15 15 C 1.41395 * 120.24653 * 179.72821 * 14 13 12 16 16 H 1.07997 * 119.99730 * 204.40007 * 15 14 13 17 17 C 1.39950 * 119.99990 * 24.39714 * 15 14 13 18 18 N 1.30822 * 119.99528 * 17.86098 * 17 15 14 19 19 Si 1.86794 * 119.99964 * 197.85752 * 17 15 14 20 20 H 1.48507 * 109.47217 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47120 * 120.00186 * 19 17 15 22 22 H 1.48500 * 109.46992 * 240.00400 * 19 17 15 23 23 C 1.40713 * 119.50785 * 359.74706 * 14 13 12 24 24 C 1.37622 * 119.74602 * 0.02562 * 23 14 13 25 25 C 1.53119 * 109.21272 * 302.38148 * 6 5 4 26 26 C 1.46849 * 110.99926 * 301.83605 * 3 2 1 27 27 H 1.09007 * 109.46184 * 65.81970 * 26 3 2 28 28 C 1.53003 * 109.46322 * 305.84768 * 26 3 2 29 29 H 1.08997 * 109.46931 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47094 * 300.00243 * 1 2 3 32 32 H 1.09007 * 109.47179 * 239.99986 * 2 1 3 33 33 H 1.08997 * 109.47238 * 119.99950 * 2 1 3 34 34 H 1.08998 * 109.45902 * 54.14402 * 4 3 2 35 35 H 1.09000 * 109.45384 * 294.17730 * 4 3 2 36 36 H 1.09006 * 109.49896 * 299.23947 * 5 4 3 37 37 H 1.08993 * 109.53732 * 179.14496 * 5 4 3 38 38 H 1.08997 * 109.47646 * 183.95280 * 9 8 6 39 39 H 1.08997 * 109.47277 * 303.95827 * 9 8 6 40 40 H 1.09009 * 109.46917 * 63.95277 * 9 8 6 41 41 H 1.08997 * 109.46721 * 50.00349 * 10 8 6 42 42 H 1.09000 * 109.47062 * 290.00365 * 10 8 6 43 43 H 1.07999 * 119.87179 * 359.97237 * 12 11 10 44 44 H 1.08007 * 120.12340 * 180.27129 * 13 12 11 45 45 H 0.97010 * 119.99383 * 179.97438 * 18 17 15 46 46 H 1.07994 * 120.12986 * 179.97438 * 23 14 13 47 47 H 1.08001 * 119.87395 * 180.02562 * 24 23 14 48 48 H 1.08997 * 109.50415 * 177.55905 * 25 6 5 49 49 H 1.08996 * 109.50129 * 297.67875 * 25 6 5 50 50 H 1.08991 * 109.47455 * 59.99584 * 28 26 3 51 51 H 1.08999 * 109.46848 * 179.97438 * 28 26 3 52 52 H 1.08998 * 109.46613 * 299.99809 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0667 1.2528 5 6 2.3185 3.4528 1.2788 6 6 1.8235 4.2650 0.0788 7 1 0.7449 4.4033 0.1527 8 7 2.4868 5.5755 0.0659 9 6 2.1082 6.3454 -1.1266 10 6 2.1918 6.3271 1.2932 11 6 3.0738 7.5473 1.3592 12 6 4.3090 7.4703 1.9840 13 6 5.1249 8.5768 2.0452 14 6 4.6966 9.7923 1.4804 15 6 5.5241 10.9372 1.5424 16 1 5.0870 11.9231 1.4848 17 6 6.9094 10.7928 1.6784 18 7 7.4779 9.6473 1.4020 19 14 7.9468 12.2354 2.2544 20 1 7.0702 13.4088 2.4998 21 1 8.6478 11.8703 3.5115 22 1 8.9470 12.5740 1.2102 23 6 3.4386 9.8601 0.8537 24 6 2.6411 8.7398 0.8001 25 6 2.1555 3.5106 -1.2116 26 6 1.5134 2.1222 -1.1647 27 1 0.4311 2.2261 -1.0864 28 6 1.8607 1.3566 -2.4431 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0317 1.4809 2.0980 35 1 0.5874 2.1708 1.3197 36 1 3.4023 3.3487 1.2257 37 1 2.0470 3.9649 2.2019 38 1 2.6664 7.2814 -1.1472 39 1 2.3372 5.7660 -2.0210 40 1 1.0399 6.5601 -1.0964 41 1 2.3809 5.6948 2.1606 42 1 1.1461 6.6344 1.2886 43 1 4.6337 6.5374 2.4207 44 1 6.0887 8.5135 2.5286 45 1 8.4382 9.5474 1.4959 46 1 3.0997 10.7880 0.4173 47 1 1.6753 8.7894 0.3193 48 1 1.7669 4.0636 -2.0667 49 1 3.2366 3.4076 -1.3050 50 1 1.4018 0.3685 -2.4109 51 1 1.4844 1.9035 -3.3076 52 1 2.9428 1.2523 -2.5214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343539795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:10 Heat of formation + Delta-G solvation = 21.148133 kcal Electronic energy + Delta-G solvation = -26947.435817 eV Core-core repulsion = 23524.984906 eV Total energy + Delta-G solvation = -3422.450912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.97409 -38.02263 -36.63074 -33.88558 -32.85209 -32.57143 -30.40133 -29.30955 -28.80295 -27.76862 -26.53266 -25.52857 -23.86988 -22.57421 -22.27735 -20.90024 -20.30450 -19.49783 -19.27705 -17.24484 -16.32776 -15.79309 -15.37337 -15.13804 -14.99272 -14.82185 -14.35858 -14.04702 -13.82365 -13.80157 -13.19785 -13.07254 -12.82386 -12.63354 -12.44354 -12.32165 -12.23981 -12.06016 -11.89094 -11.84721 -11.52209 -11.43282 -11.36014 -11.07783 -11.04234 -10.95604 -10.86917 -10.71962 -10.43818 -10.35848 -10.24045 -10.05132 -9.51547 -9.31850 -9.07051 -8.37816 -7.85536 -7.37818 -7.22227 -6.71163 -4.29785 2.77808 3.09601 3.12934 3.15064 3.20334 3.74722 3.96411 4.25917 4.67275 4.71782 4.76451 4.78839 4.94192 5.05237 5.16289 5.19607 5.20768 5.37669 5.40390 5.49968 5.53040 5.57893 5.66912 5.70118 5.74174 5.77213 5.80080 5.84693 5.87798 5.95618 5.99614 6.03368 6.09873 6.14632 6.26628 6.34751 6.41034 6.47527 6.50512 6.53570 7.00765 7.01454 7.02863 7.11896 7.35207 7.40252 7.54656 7.57569 7.67603 7.94575 8.11081 8.21281 8.35790 8.70357 8.94917 9.03691 10.23057 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.002465 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.692584 B =11355.051222 C =11528.116098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.530 5.530 4 C 0.058 3.942 5 C -0.111 4.111 6 C 0.085 3.915 7 H 0.026 0.974 8 N -0.527 5.527 9 C 0.025 3.975 10 C 0.117 3.883 11 C -0.204 4.204 12 C -0.079 4.079 13 C -0.167 4.167 14 C 0.111 3.889 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.791 5.791 19 Si 0.905 3.095 20 H -0.261 1.261 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.228 4.228 24 C -0.085 4.085 25 C -0.105 4.105 26 C 0.082 3.918 27 H 0.039 0.961 28 C -0.147 4.147 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.013 0.987 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.066 0.934 49 H 0.081 0.919 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 -16.251 -3.264 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.070 4.070 5 C -0.149 4.149 6 C -0.023 4.023 7 H 0.044 0.956 8 N -0.251 5.251 9 C -0.123 4.123 10 C -0.009 4.009 11 C -0.206 4.206 12 C -0.098 4.098 13 C -0.186 4.186 14 C 0.109 3.891 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.730 3.270 20 H -0.185 1.185 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.248 4.248 24 C -0.104 4.104 25 C -0.143 4.143 26 C -0.026 4.026 27 H 0.057 0.943 28 C -0.205 4.205 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.324 -16.446 -3.336 19.197 hybrid contribution -1.266 0.802 0.241 1.518 sum -10.590 -15.643 -3.095 19.143 Atomic orbital electron populations 1.22447 0.98544 1.02101 1.02119 1.22198 0.92662 0.90484 1.02749 1.62171 1.59358 1.01698 1.02202 1.22086 0.97694 0.95398 0.91861 1.21694 1.02375 0.93263 0.97592 1.21617 0.94986 0.90237 0.95510 0.95577 1.62137 1.57896 1.02186 1.02882 1.22423 0.97664 0.99571 0.92679 1.20814 0.95387 0.93409 0.91282 1.18844 0.97584 0.93224 1.10936 1.20480 0.93510 0.96865 0.98958 1.21302 1.00129 0.93222 1.03979 1.17614 0.90860 0.92983 0.87658 1.19608 0.91068 0.94107 1.44550 0.90573 1.25902 0.98811 0.96849 0.92636 1.69851 1.12179 1.25309 1.34302 0.86312 0.79668 0.81932 0.79099 1.18473 1.19739 1.20048 1.20926 0.98261 0.97146 1.08423 1.20342 0.97335 0.93351 0.99336 1.21748 1.02565 0.93110 0.96916 1.21606 0.96660 0.93848 0.90523 0.94294 1.21907 1.02685 0.99728 0.96156 0.92384 0.92309 0.92593 0.90363 0.90911 0.90731 0.95098 0.89949 0.91339 0.90077 0.92094 0.96891 0.91376 0.96310 0.89556 0.86571 0.90989 0.89290 0.90071 0.91582 0.90024 0.92607 0.92329 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 9.11 37.16 0.34 -1.14 16 2 C 0.05 0.40 5.51 -3.82 -0.02 0.37 16 3 N -0.53 -5.55 4.69 -226.68 -1.06 -6.62 16 4 C 0.06 0.62 5.05 -3.84 -0.02 0.60 16 5 C -0.11 -1.42 5.10 -26.65 -0.14 -1.56 16 6 C 0.09 1.16 2.01 -67.59 -0.14 1.03 16 7 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 8 N -0.53 -8.77 4.62 -236.18 -1.09 -9.86 16 9 C 0.02 0.40 8.76 60.07 0.53 0.92 16 10 C 0.12 2.10 4.93 -4.97 -0.02 2.07 16 11 C -0.20 -4.43 4.91 -104.33 -0.51 -4.95 16 12 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 13 C -0.17 -4.39 8.70 -38.87 -0.34 -4.72 16 14 C 0.11 3.00 5.57 -106.83 -0.60 2.40 16 15 C -0.46 -12.46 9.05 -37.74 -0.34 -12.80 16 16 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 17 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 18 N -0.79 -20.76 10.95 55.55 0.61 -20.15 16 19 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 20 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 24 C -0.08 -1.90 7.93 -39.66 -0.31 -2.21 16 25 C -0.11 -1.29 4.23 -26.65 -0.11 -1.40 16 26 C 0.08 0.85 1.84 -67.72 -0.12 0.73 16 27 H 0.04 0.41 6.61 -51.93 -0.34 0.07 16 28 C -0.15 -1.30 8.68 37.16 0.32 -0.98 16 29 H 0.06 0.47 6.23 -51.93 -0.32 0.14 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 6.68 -51.93 -0.35 0.11 16 32 H 0.08 0.62 6.32 -51.92 -0.33 0.29 16 33 H 0.07 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.03 0.32 6.75 -51.93 -0.35 -0.03 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 38 H 0.08 1.51 6.16 -51.93 -0.32 1.19 16 39 H 0.06 0.87 6.07 -51.93 -0.32 0.55 16 40 H 0.01 0.19 8.14 -51.92 -0.42 -0.23 16 41 H 0.07 1.16 5.82 -51.93 -0.30 0.85 16 42 H 0.02 0.33 8.06 -51.93 -0.42 -0.09 16 43 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 44 H 0.12 3.17 6.16 -52.48 -0.32 2.84 16 45 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 46 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 47 H 0.08 1.63 8.02 -52.49 -0.42 1.21 16 48 H 0.07 0.78 6.42 -51.93 -0.33 0.44 16 49 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.05 0.43 6.07 -51.93 -0.32 0.12 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 52 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 384.32 15.07 5.79 5.79 Total: -1.00 -27.23 384.32 -12.09 -39.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.96 Total: 5.74 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -2.34 Total: -28.07 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -1.55 Total: -36.63 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.23 -12.09 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.467 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds