Wall clock time and date at job start Tue Mar 31 2020 11:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47399 * 2 1 4 4 C 1.46844 * 111.00088 * 66.04496 * 3 2 1 5 5 C 1.53035 * 109.52625 * 174.16301 * 4 3 2 6 6 C 1.53124 * 109.27889 * 59.17739 * 5 4 3 7 7 H 1.08999 * 109.51483 * 62.31829 * 6 5 4 8 8 N 1.46893 * 109.52221 * 182.44293 * 6 5 4 9 9 C 1.46902 * 111.00113 * 175.92094 * 8 6 5 10 10 C 1.46907 * 111.00221 * 299.87336 * 8 6 5 11 11 C 1.50700 * 109.47130 * 170.00119 * 10 8 6 12 12 C 1.38641 * 119.74829 * 269.73361 * 11 10 8 13 13 C 1.37615 * 120.24262 * 179.72528 * 12 11 10 14 14 C 1.40716 * 119.75062 * 0.52198 * 13 12 11 15 15 C 1.41395 * 120.24653 * 179.72821 * 14 13 12 16 16 H 1.07997 * 119.99730 * 204.40007 * 15 14 13 17 17 C 1.39950 * 119.99990 * 24.39714 * 15 14 13 18 18 N 1.30822 * 119.99528 * 17.86098 * 17 15 14 19 19 Si 1.86794 * 119.99964 * 197.85752 * 17 15 14 20 20 H 1.48507 * 109.47217 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47120 * 120.00186 * 19 17 15 22 22 H 1.48500 * 109.46992 * 240.00400 * 19 17 15 23 23 C 1.40713 * 119.50785 * 359.74706 * 14 13 12 24 24 C 1.37622 * 119.74602 * 0.02562 * 23 14 13 25 25 C 1.53119 * 109.21272 * 302.38148 * 6 5 4 26 26 C 1.46849 * 110.99926 * 301.83605 * 3 2 1 27 27 H 1.09007 * 109.46184 * 65.81970 * 26 3 2 28 28 C 1.53003 * 109.46322 * 305.84768 * 26 3 2 29 29 H 1.08997 * 109.46931 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47094 * 300.00243 * 1 2 3 32 32 H 1.09007 * 109.47179 * 239.99986 * 2 1 3 33 33 H 1.08997 * 109.47238 * 119.99950 * 2 1 3 34 34 H 1.08998 * 109.45902 * 54.14402 * 4 3 2 35 35 H 1.09000 * 109.45384 * 294.17730 * 4 3 2 36 36 H 1.09006 * 109.49896 * 299.23947 * 5 4 3 37 37 H 1.08993 * 109.53732 * 179.14496 * 5 4 3 38 38 H 1.08997 * 109.47646 * 183.95280 * 9 8 6 39 39 H 1.08997 * 109.47277 * 303.95827 * 9 8 6 40 40 H 1.09009 * 109.46917 * 63.95277 * 9 8 6 41 41 H 1.08997 * 109.46721 * 50.00349 * 10 8 6 42 42 H 1.09000 * 109.47062 * 290.00365 * 10 8 6 43 43 H 1.07999 * 119.87179 * 359.97237 * 12 11 10 44 44 H 1.08007 * 120.12340 * 180.27129 * 13 12 11 45 45 H 0.97010 * 119.99383 * 179.97438 * 18 17 15 46 46 H 1.07994 * 120.12986 * 179.97438 * 23 14 13 47 47 H 1.08001 * 119.87395 * 180.02562 * 24 23 14 48 48 H 1.08997 * 109.50415 * 177.55905 * 25 6 5 49 49 H 1.08996 * 109.50129 * 297.67875 * 25 6 5 50 50 H 1.08991 * 109.47455 * 59.99584 * 28 26 3 51 51 H 1.08999 * 109.46848 * 179.97438 * 28 26 3 52 52 H 1.08998 * 109.46613 * 299.99809 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6704 2.0667 1.2528 5 6 2.3185 3.4528 1.2788 6 6 1.8235 4.2650 0.0788 7 1 0.7449 4.4033 0.1527 8 7 2.4868 5.5755 0.0659 9 6 2.1082 6.3454 -1.1266 10 6 2.1918 6.3271 1.2932 11 6 3.0738 7.5473 1.3592 12 6 4.3090 7.4703 1.9840 13 6 5.1249 8.5768 2.0452 14 6 4.6966 9.7923 1.4804 15 6 5.5241 10.9372 1.5424 16 1 5.0870 11.9231 1.4848 17 6 6.9094 10.7928 1.6784 18 7 7.4779 9.6473 1.4020 19 14 7.9468 12.2354 2.2544 20 1 7.0702 13.4088 2.4998 21 1 8.6478 11.8703 3.5115 22 1 8.9470 12.5740 1.2102 23 6 3.4386 9.8601 0.8537 24 6 2.6411 8.7398 0.8001 25 6 2.1555 3.5106 -1.2116 26 6 1.5134 2.1222 -1.1647 27 1 0.4311 2.2261 -1.0864 28 6 1.8607 1.3566 -2.4431 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0317 1.4809 2.0980 35 1 0.5874 2.1708 1.3197 36 1 3.4023 3.3487 1.2257 37 1 2.0470 3.9649 2.2019 38 1 2.6664 7.2814 -1.1472 39 1 2.3372 5.7660 -2.0210 40 1 1.0399 6.5601 -1.0964 41 1 2.3809 5.6948 2.1606 42 1 1.1461 6.6344 1.2886 43 1 4.6337 6.5374 2.4207 44 1 6.0887 8.5135 2.5286 45 1 8.4382 9.5474 1.4959 46 1 3.0997 10.7880 0.4173 47 1 1.6753 8.7894 0.3193 48 1 1.7669 4.0636 -2.0667 49 1 3.2366 3.4076 -1.3050 50 1 1.4018 0.3685 -2.4109 51 1 1.4844 1.9035 -3.3076 52 1 2.9428 1.2523 -2.5214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343539795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:09 Heat of formation + Delta-G solvation = 6.840949 kcal Electronic energy + Delta-G solvation = -26948.056223 eV Core-core repulsion = 23524.984906 eV Total energy + Delta-G solvation = -3423.071318 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93416 -39.62935 -38.01705 -35.62898 -33.98552 -33.45839 -32.05035 -31.11930 -29.81475 -29.13464 -27.63569 -26.92286 -25.08177 -23.74279 -23.24231 -22.80877 -21.73961 -20.91647 -20.15543 -19.19590 -17.30297 -17.18556 -16.63284 -16.36299 -16.08550 -15.97782 -15.74844 -15.42683 -15.30303 -14.94042 -14.60604 -14.40424 -14.11157 -13.77468 -13.67619 -13.46263 -13.39927 -13.16692 -13.12100 -12.97803 -12.85156 -12.71114 -12.62736 -12.50896 -12.31422 -12.20920 -12.12140 -12.02105 -11.85607 -11.56082 -11.41545 -11.25533 -11.15294 -11.09357 -10.91612 -9.30826 -9.27242 -9.14851 -9.02233 -8.61110 -6.30546 0.97235 1.18058 1.37921 1.50117 1.53545 2.21652 2.68170 2.98008 3.14910 3.74878 3.83235 3.89432 4.01960 4.09531 4.21860 4.28316 4.34187 4.36677 4.38240 4.48362 4.52094 4.54396 4.57030 4.59364 4.62064 4.66471 4.77093 4.78059 4.82681 4.89714 4.91145 5.00953 5.05711 5.08348 5.10935 5.13133 5.17767 5.21337 5.24244 5.30272 5.37692 5.41602 5.50048 5.51819 5.74162 5.98242 6.12508 6.17118 6.23255 6.27344 6.34147 6.37811 6.42468 6.74372 6.97245 7.07684 8.35683 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027292 B = 0.002465 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.692584 B =11355.051222 C =11528.116098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.064 3.936 5 C -0.108 4.108 6 C 0.088 3.912 7 H 0.032 0.968 8 N -0.544 5.544 9 C 0.028 3.972 10 C 0.124 3.876 11 C -0.190 4.190 12 C -0.085 4.085 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.502 4.502 16 H 0.073 0.927 17 C 0.034 3.966 18 N -0.826 5.826 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.266 1.266 23 C -0.244 4.244 24 C -0.081 4.081 25 C -0.100 4.100 26 C 0.086 3.914 27 H 0.043 0.957 28 C -0.143 4.143 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.287 0.713 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.068 0.932 51 H 0.065 0.935 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.031 -17.781 -3.591 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.080 4.080 3 N -0.269 5.269 4 C -0.064 4.064 5 C -0.146 4.146 6 C -0.020 4.020 7 H 0.050 0.950 8 N -0.268 5.268 9 C -0.120 4.120 10 C -0.003 4.003 11 C -0.192 4.192 12 C -0.104 4.104 13 C -0.210 4.210 14 C 0.076 3.924 15 C -0.532 4.532 16 H 0.091 0.909 17 C -0.181 4.181 18 N -0.452 5.452 19 Si 0.802 3.198 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.190 1.190 23 C -0.263 4.263 24 C -0.100 4.100 25 C -0.139 4.139 26 C -0.022 4.022 27 H 0.060 0.940 28 C -0.200 4.200 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.049 0.951 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.111 0.889 47 H 0.127 0.873 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.795 -17.996 -3.672 21.304 hybrid contribution -0.917 1.139 0.295 1.492 sum -11.712 -16.858 -3.377 20.803 Atomic orbital electron populations 1.22385 0.97743 1.02843 1.01663 1.22249 0.93276 0.89177 1.03344 1.62157 1.60000 1.02683 1.02018 1.22007 0.97775 0.94205 0.92460 1.21648 1.01161 0.94626 0.97190 1.21667 0.94922 0.88699 0.96673 0.95005 1.62037 1.59094 1.03260 1.02366 1.22363 0.97965 0.98473 0.93199 1.20716 0.94926 0.92067 0.92586 1.19257 0.97007 0.94652 1.08280 1.20697 0.94048 0.96597 0.99076 1.21253 1.00166 0.94283 1.05301 1.17952 0.92104 0.93538 0.88773 1.19836 0.92353 0.94022 1.46985 0.90918 1.26763 0.99520 0.99814 0.91991 1.69907 1.12911 1.27362 1.35012 0.85176 0.77721 0.78074 0.78811 1.18222 1.18858 1.19046 1.21132 0.98176 0.98370 1.08672 1.20615 0.98042 0.92675 0.98660 1.21700 1.01452 0.94388 0.96317 1.21558 0.96504 0.92883 0.91282 0.93955 1.21871 1.02203 1.00354 0.95602 0.92683 0.91015 0.93119 0.89738 0.90437 0.89876 0.94466 0.92045 0.91386 0.92981 0.90505 0.95516 0.90348 0.95093 0.88178 0.88459 0.90264 0.88854 0.87315 0.91049 0.92015 0.91290 0.91556 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 9.11 71.98 0.66 -1.68 16 2 C 0.05 0.67 5.51 86.30 0.48 1.15 16 3 N -0.54 -10.28 4.69 -871.09 -4.09 -14.37 16 4 C 0.06 1.23 5.05 86.33 0.44 1.67 16 5 C -0.11 -2.61 5.10 30.65 0.16 -2.45 16 6 C 0.09 2.25 2.01 45.00 0.09 2.34 16 7 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 8 N -0.54 -17.26 4.62 -901.13 -4.17 -21.43 16 9 C 0.03 0.85 8.76 127.69 1.12 1.97 16 10 C 0.12 4.20 4.93 85.56 0.42 4.63 16 11 C -0.19 -8.15 4.91 -19.67 -0.10 -8.25 16 12 C -0.09 -4.08 9.67 22.22 0.21 -3.87 16 13 C -0.19 -10.41 8.70 22.73 0.20 -10.21 16 14 C 0.08 4.40 5.57 -21.29 -0.12 4.28 16 15 C -0.50 -28.10 9.05 23.46 0.21 -27.89 16 16 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 17 C 0.03 1.75 5.14 85.26 0.44 2.19 16 18 N -0.83 -44.84 10.95 21.83 0.24 -44.60 16 19 Si 0.98 39.44 29.59 68.60 2.03 41.47 16 20 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 21 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 22 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 23 C -0.24 -12.34 9.80 22.73 0.22 -12.12 16 24 C -0.08 -3.59 7.93 22.22 0.18 -3.42 16 25 C -0.10 -2.29 4.23 30.65 0.13 -2.16 16 26 C 0.09 1.60 1.84 44.94 0.08 1.68 16 27 H 0.04 0.78 6.61 -2.38 -0.02 0.76 16 28 C -0.14 -2.20 8.68 71.98 0.63 -1.57 16 29 H 0.05 0.73 6.23 -2.39 -0.01 0.71 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.69 6.68 -2.39 -0.02 0.67 16 32 H 0.08 1.11 6.32 -2.38 -0.02 1.09 16 33 H 0.08 1.04 8.06 -2.39 -0.02 1.02 16 34 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 35 H 0.04 0.68 6.75 -2.39 -0.02 0.67 16 36 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.62 6.34 -2.39 -0.02 1.60 16 38 H 0.05 1.89 6.16 -2.39 -0.01 1.88 16 39 H 0.08 2.07 6.07 -2.39 -0.01 2.05 16 40 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 2.51 5.82 -2.39 -0.01 2.50 16 42 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 43 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 44 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 45 H 0.29 14.04 8.30 -92.70 -0.77 13.27 16 46 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 47 H 0.11 4.16 8.02 -2.91 -0.02 4.14 16 48 H 0.07 1.53 6.42 -2.39 -0.02 1.52 16 49 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.07 0.88 6.07 -2.39 -0.01 0.87 16 51 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -60.44 384.32 0.33 -60.10 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.88 Total: 32.54 kcal Atomic # 6 Polarization: -59.16 SS G_CDS: 5.44 Total: -53.72 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -8.02 Total: -80.39 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -60.44 0.33 -60.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343539795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.945 kcal (2) G-P(sol) polarization free energy of solvation -60.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds