Wall clock time and date at job start Tue Mar 31 2020 11:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47093 * 2 1 4 4 N 1.46904 * 109.46878 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99934 * 293.95245 * 4 3 2 6 6 C 1.46903 * 110.99306 * 169.99879 * 4 3 2 7 7 C 1.53005 * 109.46786 * 189.99833 * 6 4 3 8 8 H 1.09009 * 110.64375 * 303.30465 * 7 6 4 9 9 C 1.54590 * 110.72469 * 66.45252 * 7 6 4 10 10 C 1.53993 * 105.13990 * 140.31371 * 9 7 6 11 11 N 1.47899 * 107.05663 * 1.22761 * 10 9 7 12 12 C 1.46902 * 111.00099 * 214.15292 * 11 10 9 13 13 C 1.50699 * 109.47002 * 69.87703 * 12 11 10 14 14 C 1.38627 * 119.75123 * 89.99781 * 13 12 11 15 15 C 1.37617 * 120.24981 * 179.69930 * 14 13 12 16 16 C 1.40718 * 119.74355 * 0.28290 * 15 14 13 17 17 C 1.41402 * 120.24523 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99833 * 204.38492 * 17 16 15 19 19 C 1.39950 * 119.99673 * 24.38625 * 17 16 15 20 20 N 1.30819 * 120.00082 * 17.85869 * 19 17 16 21 21 Si 1.86800 * 119.99528 * 197.85991 * 19 17 16 22 22 H 1.48491 * 109.47313 * 89.99856 * 21 19 17 23 23 H 1.48501 * 109.46879 * 209.99817 * 21 19 17 24 24 H 1.48499 * 109.47205 * 329.99640 * 21 19 17 25 25 C 1.40718 * 119.51138 * 359.97438 * 16 15 14 26 26 C 1.37614 * 119.74432 * 0.02562 * 25 16 15 27 27 C 1.48526 * 105.82271 * 334.67039 * 11 10 9 28 28 H 1.08998 * 109.47225 * 299.99771 * 1 2 3 29 29 H 1.09004 * 109.47037 * 60.00144 * 1 2 3 30 30 H 1.09000 * 109.46727 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47550 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.47405 * 119.99648 * 2 1 3 33 33 H 1.08998 * 109.46899 * 60.00029 * 3 2 1 34 34 H 1.08998 * 109.46708 * 300.00075 * 3 2 1 35 35 H 1.09003 * 109.46911 * 296.04882 * 5 4 3 36 36 H 1.08992 * 109.47320 * 56.05075 * 5 4 3 37 37 H 1.08998 * 109.47134 * 176.05191 * 5 4 3 38 38 H 1.08996 * 109.46801 * 70.00188 * 6 4 3 39 39 H 1.08992 * 109.47393 * 309.99548 * 6 4 3 40 40 H 1.09006 * 110.30746 * 21.39948 * 9 7 6 41 41 H 1.08996 * 110.39921 * 259.27864 * 9 7 6 42 42 H 1.08997 * 109.92067 * 241.87408 * 10 9 7 43 43 H 1.09007 * 110.08075 * 120.66893 * 10 9 7 44 44 H 1.09003 * 109.46762 * 309.87281 * 12 11 10 45 45 H 1.08998 * 109.47276 * 189.87577 * 12 11 10 46 46 H 1.08001 * 119.87708 * 359.97438 * 14 13 12 47 47 H 1.08000 * 120.13392 * 180.29978 * 15 14 13 48 48 H 0.97001 * 119.99459 * 180.02562 * 20 19 17 49 49 H 1.08003 * 120.12464 * 179.97438 * 25 16 15 50 50 H 1.08007 * 119.87423 * 180.02562 * 26 25 16 51 51 H 1.09004 * 110.67335 * 157.64452 * 27 11 10 52 52 H 1.09002 * 110.66416 * 280.77464 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0355 2.7931 -0.2376 7 6 5.5446 2.7172 -0.4778 8 1 6.0439 2.2358 0.3631 9 6 5.8517 1.9709 -1.7964 10 6 7.0180 2.7471 -2.4356 11 7 7.3651 3.8479 -1.5107 12 6 7.8034 5.0388 -2.2507 13 6 6.6262 5.6440 -2.9711 14 6 5.8524 6.6046 -2.3386 15 6 4.7788 7.1685 -2.9892 16 6 4.4642 6.7622 -4.2992 17 6 3.3638 7.3350 -4.9777 18 1 2.8793 6.7919 -5.7755 19 6 2.9027 8.6057 -4.6153 20 7 3.6680 9.4047 -3.9173 21 14 1.1945 9.1608 -5.1286 22 1 0.2143 8.7788 -4.0806 23 1 1.1845 10.6356 -5.3017 24 1 0.8269 8.5092 -6.4114 25 6 5.2536 5.7824 -4.9293 26 6 6.3224 5.2322 -4.2596 27 6 6.1308 4.1283 -0.7337 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.7434 1.5265 2.0866 36 1 3.6292 -0.1142 1.4061 37 1 5.1222 0.8327 1.2002 38 1 3.8371 3.4190 0.6325 39 1 3.5494 3.2234 -1.1131 40 1 4.9813 1.9880 -2.4524 41 1 6.1493 0.9427 -1.5906 42 1 6.7096 3.1544 -3.3984 43 1 7.8770 2.0893 -2.5688 44 1 8.5667 4.7556 -2.9756 45 1 8.2169 5.7678 -1.5539 46 1 6.0956 6.9148 -1.3331 47 1 4.1800 7.9203 -2.4964 48 1 3.3482 10.2853 -3.6658 49 1 5.0208 5.4629 -5.9344 50 1 6.9299 4.4803 -4.7415 51 1 6.3725 4.6211 0.2080 52 1 5.4372 4.7327 -1.3184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343616490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:55 Heat of formation + Delta-G solvation = 14.961555 kcal Electronic energy + Delta-G solvation = -27144.413770 eV Core-core repulsion = 23721.694589 eV Total energy + Delta-G solvation = -3422.719182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.43507 -37.98454 -36.81303 -34.19057 -33.43267 -31.91395 -29.95852 -29.31067 -28.68875 -27.27560 -26.68020 -25.48917 -23.65440 -22.51599 -21.05849 -20.88957 -20.62321 -19.58170 -19.39089 -17.34736 -16.15206 -15.78871 -15.47967 -15.40309 -15.07864 -14.38675 -14.29451 -14.10983 -13.86100 -13.78689 -13.40781 -13.01975 -12.80789 -12.58338 -12.39615 -12.17862 -12.08096 -11.97993 -11.74240 -11.67188 -11.36456 -11.29402 -11.15843 -11.06534 -10.93290 -10.78706 -10.71422 -10.64637 -10.48987 -10.40196 -10.31030 -10.06795 -9.76222 -9.42129 -9.16336 -8.32054 -7.82545 -7.46281 -7.34280 -6.80444 -4.39749 2.70479 3.00493 3.03966 3.07053 3.14989 3.85074 3.89033 4.49522 4.65895 4.79344 4.91376 5.02930 5.08174 5.13586 5.24561 5.30852 5.36905 5.46175 5.54391 5.63386 5.64903 5.68306 5.72284 5.74668 5.85082 5.89414 5.92642 6.00714 6.03617 6.05961 6.09223 6.15442 6.19994 6.29367 6.31256 6.37678 6.44826 6.47115 6.61370 6.68583 6.90768 7.02610 7.06377 7.07669 7.19603 7.30084 7.42838 7.56308 7.57405 7.81967 8.00783 8.08061 8.25427 8.59555 8.85148 8.92871 10.13502 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.003991 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.162160 B = 7014.823135 C = 9141.641899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.053 3.947 4 N -0.539 5.539 5 C 0.021 3.979 6 C 0.064 3.936 7 C -0.084 4.084 8 H 0.073 0.927 9 C -0.105 4.105 10 C 0.024 3.976 11 N -0.513 5.513 12 C 0.103 3.897 13 C -0.245 4.245 14 C -0.088 4.088 15 C -0.166 4.166 16 C 0.114 3.886 17 C -0.463 4.463 18 H 0.077 0.923 19 C 0.077 3.923 20 N -0.792 5.792 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.227 4.227 26 C -0.080 4.080 27 C 0.030 3.970 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.021 0.979 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.280 0.720 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.067 0.933 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -12.911 8.501 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.075 4.075 4 N -0.262 5.262 5 C -0.128 4.128 6 C -0.064 4.064 7 C -0.103 4.103 8 H 0.091 0.909 9 C -0.143 4.143 10 C -0.104 4.104 11 N -0.236 5.236 12 C -0.024 4.024 13 C -0.248 4.248 14 C -0.107 4.107 15 C -0.186 4.186 16 C 0.111 3.889 17 C -0.493 4.493 18 H 0.095 0.905 19 C -0.141 4.141 20 N -0.417 5.417 21 Si 0.731 3.269 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.247 4.247 26 C -0.098 4.098 27 C -0.098 4.098 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.134 0.866 48 H 0.091 0.909 49 H 0.108 0.892 50 H 0.103 0.897 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.901 -13.108 8.549 15.675 hybrid contribution -1.653 1.258 -0.139 2.082 sum -2.554 -11.849 8.411 14.754 Atomic orbital electron populations 1.21744 0.95789 1.01570 1.01869 1.21533 0.95223 0.96547 1.02473 1.22179 0.87380 0.97039 1.00904 1.61969 1.07176 1.22712 1.34374 1.22457 1.01043 0.99491 0.89780 1.22163 0.95316 0.88223 1.00717 1.22024 0.93712 0.96365 0.98228 0.90850 1.22201 0.97779 0.98396 0.95970 1.22956 0.97160 0.93539 0.96728 1.65173 1.29653 1.06696 1.22038 1.20944 0.95114 0.90985 0.95403 1.19577 1.02823 1.05512 0.96850 1.20516 0.96371 0.96347 0.97496 1.21304 0.99319 1.02804 0.95124 1.17608 0.90621 0.89636 0.91032 1.19617 1.12478 1.00485 1.16697 0.90504 1.25901 0.98462 0.96280 0.93455 1.69827 1.35305 1.07394 1.29144 0.86339 0.82376 0.78072 0.80131 1.19273 1.20277 1.18591 1.20964 0.99303 1.05428 0.99000 1.20381 0.97197 0.98184 0.94072 1.23403 0.92283 0.95925 0.98189 0.92983 0.92514 0.92695 0.91153 0.92199 0.95167 0.90642 0.96013 0.91558 0.91142 0.94962 0.90295 0.91509 0.92019 0.92288 0.91784 0.91965 0.91640 0.89694 0.86580 0.90862 0.89221 0.89672 0.91497 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.12 5.87 -26.73 -0.16 -1.28 16 3 C 0.05 0.58 4.96 -3.82 -0.02 0.56 16 4 N -0.54 -6.47 4.57 -242.92 -1.11 -7.58 16 5 C 0.02 0.21 9.14 60.06 0.55 0.76 16 6 C 0.06 0.86 4.29 -3.82 -0.02 0.85 16 7 C -0.08 -1.17 2.94 -88.76 -0.26 -1.43 16 8 H 0.07 0.99 6.49 -51.92 -0.34 0.65 16 9 C -0.11 -1.52 6.33 -25.38 -0.16 -1.68 16 10 C 0.02 0.38 6.46 -2.76 -0.02 0.36 16 11 N -0.51 -8.53 5.54 -231.90 -1.28 -9.81 16 12 C 0.10 1.84 5.69 -4.98 -0.03 1.81 16 13 C -0.25 -5.12 3.99 -104.33 -0.42 -5.53 16 14 C -0.09 -1.98 7.45 -39.66 -0.30 -2.27 16 15 C -0.17 -4.20 8.70 -38.87 -0.34 -4.54 16 16 C 0.11 2.97 5.58 -106.82 -0.60 2.37 16 17 C -0.46 -12.16 9.05 -37.74 -0.34 -12.50 16 18 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 19 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 20 N -0.79 -20.24 10.95 55.55 0.61 -19.63 16 21 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.23 -5.50 9.80 -38.87 -0.38 -5.88 16 26 C -0.08 -1.73 8.15 -39.66 -0.32 -2.05 16 27 C 0.03 0.49 5.50 -1.90 -0.01 0.48 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.53 6.47 -51.93 -0.34 0.19 16 33 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 35 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.61 6.30 -51.93 -0.33 0.28 16 37 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 38 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 40 H 0.07 1.03 7.80 -51.93 -0.41 0.63 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.02 4.82 -51.93 -0.25 0.77 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.07 8.02 -51.93 -0.42 0.65 16 45 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 46 H 0.08 1.76 8.05 -52.49 -0.42 1.34 16 47 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 48 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 49 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 50 H 0.09 1.68 7.14 -52.48 -0.37 1.30 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 52 H 0.08 1.46 4.76 -51.93 -0.25 1.21 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -25.96 392.85 -12.64 -38.60 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -9.21 Total: 8.07 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -2.53 Total: -29.03 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -1.79 Total: -37.02 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -25.96 -12.64 -38.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343616490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.565 kcal (2) G-P(sol) polarization free energy of solvation -25.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds