Wall clock time and date at job start Tue Mar 31 2020 11:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47093 * 2 1 4 4 N 1.46904 * 109.46878 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99934 * 293.95245 * 4 3 2 6 6 C 1.46903 * 110.99306 * 169.99879 * 4 3 2 7 7 C 1.53005 * 109.46786 * 189.99833 * 6 4 3 8 8 H 1.09009 * 110.64375 * 303.30465 * 7 6 4 9 9 C 1.54590 * 110.72469 * 66.45252 * 7 6 4 10 10 C 1.53993 * 105.13990 * 140.31371 * 9 7 6 11 11 N 1.47899 * 107.05663 * 1.22761 * 10 9 7 12 12 C 1.46902 * 111.00099 * 214.15292 * 11 10 9 13 13 C 1.50699 * 109.47002 * 69.87703 * 12 11 10 14 14 C 1.38627 * 119.75123 * 89.99781 * 13 12 11 15 15 C 1.37617 * 120.24981 * 179.69930 * 14 13 12 16 16 C 1.40718 * 119.74355 * 0.28290 * 15 14 13 17 17 C 1.41402 * 120.24523 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99833 * 204.38492 * 17 16 15 19 19 C 1.39950 * 119.99673 * 24.38625 * 17 16 15 20 20 N 1.30819 * 120.00082 * 17.85869 * 19 17 16 21 21 Si 1.86800 * 119.99528 * 197.85991 * 19 17 16 22 22 H 1.48491 * 109.47313 * 89.99856 * 21 19 17 23 23 H 1.48501 * 109.46879 * 209.99817 * 21 19 17 24 24 H 1.48499 * 109.47205 * 329.99640 * 21 19 17 25 25 C 1.40718 * 119.51138 * 359.97438 * 16 15 14 26 26 C 1.37614 * 119.74432 * 0.02562 * 25 16 15 27 27 C 1.48526 * 105.82271 * 334.67039 * 11 10 9 28 28 H 1.08998 * 109.47225 * 299.99771 * 1 2 3 29 29 H 1.09004 * 109.47037 * 60.00144 * 1 2 3 30 30 H 1.09000 * 109.46727 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47550 * 239.99978 * 2 1 3 32 32 H 1.08998 * 109.47405 * 119.99648 * 2 1 3 33 33 H 1.08998 * 109.46899 * 60.00029 * 3 2 1 34 34 H 1.08998 * 109.46708 * 300.00075 * 3 2 1 35 35 H 1.09003 * 109.46911 * 296.04882 * 5 4 3 36 36 H 1.08992 * 109.47320 * 56.05075 * 5 4 3 37 37 H 1.08998 * 109.47134 * 176.05191 * 5 4 3 38 38 H 1.08996 * 109.46801 * 70.00188 * 6 4 3 39 39 H 1.08992 * 109.47393 * 309.99548 * 6 4 3 40 40 H 1.09006 * 110.30746 * 21.39948 * 9 7 6 41 41 H 1.08996 * 110.39921 * 259.27864 * 9 7 6 42 42 H 1.08997 * 109.92067 * 241.87408 * 10 9 7 43 43 H 1.09007 * 110.08075 * 120.66893 * 10 9 7 44 44 H 1.09003 * 109.46762 * 309.87281 * 12 11 10 45 45 H 1.08998 * 109.47276 * 189.87577 * 12 11 10 46 46 H 1.08001 * 119.87708 * 359.97438 * 14 13 12 47 47 H 1.08000 * 120.13392 * 180.29978 * 15 14 13 48 48 H 0.97001 * 119.99459 * 180.02562 * 20 19 17 49 49 H 1.08003 * 120.12464 * 179.97438 * 25 16 15 50 50 H 1.08007 * 119.87423 * 180.02562 * 26 25 16 51 51 H 1.09004 * 110.67335 * 157.64452 * 27 11 10 52 52 H 1.09002 * 110.66416 * 280.77464 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0349 0.8859 1.2542 6 6 4.0355 2.7931 -0.2376 7 6 5.5446 2.7172 -0.4778 8 1 6.0439 2.2358 0.3631 9 6 5.8517 1.9709 -1.7964 10 6 7.0180 2.7471 -2.4356 11 7 7.3651 3.8479 -1.5107 12 6 7.8034 5.0388 -2.2507 13 6 6.6262 5.6440 -2.9711 14 6 5.8524 6.6046 -2.3386 15 6 4.7788 7.1685 -2.9892 16 6 4.4642 6.7622 -4.2992 17 6 3.3638 7.3350 -4.9777 18 1 2.8793 6.7919 -5.7755 19 6 2.9027 8.6057 -4.6153 20 7 3.6680 9.4047 -3.9173 21 14 1.1945 9.1608 -5.1286 22 1 0.2143 8.7788 -4.0806 23 1 1.1845 10.6356 -5.3017 24 1 0.8269 8.5092 -6.4114 25 6 5.2536 5.7824 -4.9293 26 6 6.3224 5.2322 -4.2596 27 6 6.1308 4.1283 -0.7337 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.7434 1.5265 2.0866 36 1 3.6292 -0.1142 1.4061 37 1 5.1222 0.8327 1.2002 38 1 3.8371 3.4190 0.6325 39 1 3.5494 3.2234 -1.1131 40 1 4.9813 1.9880 -2.4524 41 1 6.1493 0.9427 -1.5906 42 1 6.7096 3.1544 -3.3984 43 1 7.8770 2.0893 -2.5688 44 1 8.5667 4.7556 -2.9756 45 1 8.2169 5.7678 -1.5539 46 1 6.0956 6.9148 -1.3331 47 1 4.1800 7.9203 -2.4964 48 1 3.3482 10.2853 -3.6658 49 1 5.0208 5.4629 -5.9344 50 1 6.9299 4.4803 -4.7415 51 1 6.3725 4.6211 0.2080 52 1 5.4372 4.7327 -1.3184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343616490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:54 Heat of formation + Delta-G solvation = 1.980220 kcal Electronic energy + Delta-G solvation = -27144.976683 eV Core-core repulsion = 23721.694589 eV Total energy + Delta-G solvation = -3423.282095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82021 -39.29027 -38.21710 -35.78716 -34.63495 -33.21803 -31.58146 -31.05189 -30.05126 -28.25552 -28.02594 -26.81208 -25.13952 -23.62306 -22.77153 -22.32368 -21.65789 -21.10351 -20.61947 -19.24491 -17.29613 -17.21214 -16.75217 -16.60376 -16.44708 -15.78619 -15.54759 -15.47327 -15.26013 -15.11202 -14.81441 -14.37960 -13.96304 -13.80878 -13.76823 -13.75753 -13.43281 -13.08771 -12.94123 -12.88696 -12.72771 -12.64715 -12.47342 -12.41073 -12.27325 -12.14189 -12.09050 -12.00169 -11.67566 -11.62288 -11.51827 -11.41906 -11.26193 -11.21438 -11.00840 -9.34458 -9.30850 -9.25420 -9.15394 -8.65660 -6.35808 0.92647 1.11970 1.34911 1.47743 1.48469 2.17823 2.67724 2.88834 3.30708 3.71549 3.85407 3.90969 3.93026 4.05148 4.14370 4.27155 4.33955 4.41214 4.45811 4.48949 4.52038 4.56247 4.56581 4.60124 4.65742 4.74023 4.78372 4.83190 4.86858 4.90600 4.96421 4.98721 5.06220 5.06441 5.13192 5.14671 5.19720 5.21885 5.30071 5.30735 5.35937 5.41095 5.44393 5.50052 5.67767 5.93942 6.00029 6.07885 6.08826 6.15474 6.21115 6.27889 6.37520 6.68592 6.92533 7.01858 8.30342 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009603 B = 0.003991 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2915.162160 B = 7014.823135 C = 9141.641899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.052 3.948 4 N -0.545 5.545 5 C 0.021 3.979 6 C 0.071 3.929 7 C -0.073 4.073 8 H 0.089 0.911 9 C -0.099 4.099 10 C 0.022 3.978 11 N -0.506 5.506 12 C 0.107 3.893 13 C -0.228 4.228 14 C -0.086 4.086 15 C -0.188 4.188 16 C 0.084 3.916 17 C -0.503 4.503 18 H 0.071 0.929 19 C 0.038 3.962 20 N -0.824 5.824 21 Si 0.978 3.022 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.259 1.259 25 C -0.245 4.245 26 C -0.078 4.078 27 C 0.029 3.971 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.288 0.712 49 H 0.090 0.910 50 H 0.111 0.889 51 H 0.074 0.926 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 -14.597 9.687 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.076 4.076 4 N -0.268 5.268 5 C -0.127 4.127 6 C -0.057 4.057 7 C -0.092 4.092 8 H 0.107 0.893 9 C -0.137 4.137 10 C -0.106 4.106 11 N -0.228 5.228 12 C -0.021 4.021 13 C -0.230 4.230 14 C -0.105 4.105 15 C -0.208 4.208 16 C 0.081 3.919 17 C -0.533 4.533 18 H 0.089 0.911 19 C -0.177 4.177 20 N -0.450 5.450 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.183 1.183 25 C -0.265 4.265 26 C -0.097 4.097 27 C -0.099 4.099 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.098 0.902 49 H 0.109 0.891 50 H 0.129 0.871 51 H 0.093 0.907 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.340 -14.811 9.741 17.730 hybrid contribution -1.706 1.682 -0.446 2.436 sum -2.046 -13.129 9.295 16.216 Atomic orbital electron populations 1.21733 0.94950 1.02353 1.01757 1.21478 0.95904 0.95089 1.02599 1.22207 0.86945 0.98241 1.00195 1.61978 1.07710 1.21476 1.35672 1.22510 1.01226 1.00134 0.88819 1.21987 0.95007 0.89215 0.99527 1.21948 0.93812 0.94891 0.98566 0.89309 1.22140 0.96699 0.99264 0.95615 1.23031 0.98319 0.93529 0.95675 1.65212 1.29653 1.06157 1.21787 1.20976 0.93872 0.91551 0.95707 1.19951 1.02878 1.03795 0.96377 1.20697 0.95545 0.96194 0.98042 1.21236 1.00640 1.03575 0.95339 1.17916 0.91498 0.90758 0.91706 1.19836 1.13886 1.01756 1.17822 0.91059 1.26702 1.02092 0.95731 0.93181 1.69875 1.37043 1.07945 1.30146 0.85261 0.77129 0.77964 0.79740 1.18706 1.19092 1.18300 1.21142 1.00180 1.05716 0.99430 1.20657 0.96500 0.98139 0.94384 1.23379 0.91618 0.96970 0.97958 0.92610 0.93154 0.91452 0.91820 0.91147 0.95051 0.92231 0.95816 0.90070 0.90824 0.95049 0.92948 0.93188 0.90224 0.94048 0.89826 0.90538 0.90833 0.88147 0.88479 0.90169 0.89125 0.87128 0.90717 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.11 -1.95 5.87 30.60 0.18 -1.77 16 3 C 0.05 1.12 4.96 86.30 0.43 1.55 16 4 N -0.54 -12.47 4.57 -922.45 -4.22 -16.69 16 5 C 0.02 0.38 9.14 127.69 1.17 1.55 16 6 C 0.07 1.90 4.29 86.30 0.37 2.27 16 7 C -0.07 -1.92 2.94 -9.59 -0.03 -1.95 16 8 H 0.09 2.12 6.49 -2.38 -0.02 2.11 16 9 C -0.10 -2.68 6.33 31.47 0.20 -2.48 16 10 C 0.02 0.65 6.46 86.45 0.56 1.21 16 11 N -0.51 -15.60 5.54 -887.58 -4.91 -20.52 16 12 C 0.11 3.56 5.69 85.56 0.49 4.05 16 13 C -0.23 -9.34 3.99 -19.68 -0.08 -9.42 16 14 C -0.09 -3.89 7.45 22.22 0.17 -3.73 16 15 C -0.19 -9.92 8.70 22.73 0.20 -9.72 16 16 C 0.08 4.56 5.58 -21.29 -0.12 4.44 16 17 C -0.50 -27.68 9.05 23.46 0.21 -27.47 16 18 H 0.07 3.82 7.91 -2.91 -0.02 3.80 16 19 C 0.04 1.94 5.14 85.26 0.44 2.37 16 20 N -0.82 -43.59 10.95 21.83 0.24 -43.35 16 21 Si 0.98 38.73 29.60 68.60 2.03 40.76 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 25 C -0.25 -12.19 9.80 22.73 0.22 -11.97 16 26 C -0.08 -3.38 8.15 22.22 0.18 -3.20 16 27 C 0.03 0.91 5.50 86.65 0.48 1.38 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.08 6.47 -2.39 -0.02 1.06 16 33 H 0.03 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.06 1.45 7.93 -2.39 -0.02 1.43 16 35 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.08 1.25 6.30 -2.39 -0.02 1.24 16 37 H 0.07 1.31 6.43 -2.39 -0.02 1.29 16 38 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 39 H 0.05 1.67 7.86 -2.39 -0.02 1.65 16 40 H 0.05 1.52 7.80 -2.38 -0.02 1.50 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.36 4.82 -2.39 -0.01 1.35 16 43 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.08 2.38 8.02 -2.39 -0.02 2.36 16 45 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 46 H 0.10 4.16 8.05 -2.91 -0.02 4.14 16 47 H 0.10 5.40 6.16 -2.91 -0.02 5.39 16 48 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 49 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 50 H 0.11 4.18 7.14 -2.91 -0.02 4.16 16 51 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 52 H 0.05 1.77 4.76 -2.39 -0.01 1.76 16 Total: -1.00 -57.44 392.85 -0.22 -57.67 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: 0.87 Total: 36.57 kcal Atomic # 6 Polarization: -60.20 SS G_CDS: 5.77 Total: -54.43 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -8.89 Total: -80.56 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -57.44 -0.22 -57.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343616490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.646 kcal (2) G-P(sol) polarization free energy of solvation -57.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds