Wall clock time and date at job start Tue Mar 31 2020 11:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 N 1.46898 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.46901 * 111.00295 * 66.04402 * 4 3 2 6 6 C 1.46902 * 110.99923 * 190.00055 * 4 3 2 7 7 C 1.53004 * 109.47073 * 169.99955 * 6 4 3 8 8 H 1.09001 * 110.76220 * 51.79718 * 7 6 4 9 9 C 1.55135 * 110.70574 * 288.59587 * 7 6 4 10 10 C 1.54900 * 101.65523 * 205.96279 * 9 7 6 11 11 N 1.47846 * 104.79398 * 37.07167 * 10 9 7 12 12 C 1.46902 * 110.99994 * 213.63372 * 11 10 9 13 13 C 1.50693 * 109.47545 * 290.84550 * 12 11 10 14 14 C 1.38641 * 119.75401 * 89.99618 * 13 12 11 15 15 C 1.37615 * 120.25201 * 180.02562 * 14 13 12 16 16 C 1.40718 * 119.74259 * 359.97438 * 15 14 13 17 17 C 1.41394 * 120.23973 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00336 * 335.72682 * 17 16 15 19 19 C 1.39951 * 119.99753 * 155.72525 * 17 16 15 20 20 N 1.30822 * 120.00049 * 342.30217 * 19 17 16 21 21 Si 1.86805 * 119.99867 * 162.02452 * 19 17 16 22 22 H 1.48496 * 109.47001 * 59.99845 * 21 19 17 23 23 H 1.48494 * 109.46996 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47127 * 300.00154 * 21 19 17 25 25 C 1.40712 * 119.51293 * 0.27552 * 16 15 14 26 26 C 1.37613 * 119.74592 * 359.42497 * 25 16 15 27 27 C 1.47440 * 108.56862 * 335.90429 * 11 10 9 28 28 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47398 * 300.00646 * 1 2 3 30 30 H 1.09009 * 109.46741 * 60.00303 * 1 2 3 31 31 H 1.08996 * 109.47004 * 239.99711 * 2 1 3 32 32 H 1.09000 * 109.46549 * 119.99713 * 2 1 3 33 33 H 1.09002 * 109.47045 * 59.99858 * 3 2 1 34 34 H 1.08996 * 109.46974 * 299.99751 * 3 2 1 35 35 H 1.08994 * 109.47256 * 183.95045 * 5 4 3 36 36 H 1.08994 * 109.46879 * 303.95728 * 5 4 3 37 37 H 1.09006 * 109.46330 * 63.95110 * 5 4 3 38 38 H 1.08998 * 109.47564 * 49.99774 * 6 4 3 39 39 H 1.09004 * 109.46915 * 289.99519 * 6 4 3 40 40 H 1.08995 * 110.99611 * 324.05861 * 9 7 6 41 41 H 1.09006 * 110.98804 * 87.83669 * 9 7 6 42 42 H 1.08998 * 110.37615 * 278.24340 * 10 9 7 43 43 H 1.08998 * 110.37705 * 155.89964 * 10 9 7 44 44 H 1.08994 * 109.47099 * 170.84192 * 12 11 10 45 45 H 1.09004 * 109.46790 * 50.84178 * 12 11 10 46 46 H 1.07998 * 119.87037 * 0.02562 * 14 13 12 47 47 H 1.07997 * 120.12414 * 180.02562 * 15 14 13 48 48 H 0.96998 * 119.99844 * 180.02562 * 20 19 17 49 49 H 1.08004 * 120.12440 * 179.69959 * 25 16 15 50 50 H 1.08000 * 119.88062 * 180.27048 * 26 25 16 51 51 H 1.08992 * 109.89029 * 120.39613 * 27 11 10 52 52 H 1.08999 * 109.88958 * 241.58736 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5442 2.7172 0.4804 8 1 6.0357 2.1601 -0.3172 9 6 5.8471 2.0799 1.8620 10 6 7.2309 2.6925 2.1926 11 7 7.1639 4.0766 1.6771 12 6 8.4741 4.5170 1.1797 13 6 9.4220 4.6830 2.3394 14 6 10.1969 3.6105 2.7535 15 6 11.0655 3.7505 3.8117 16 6 11.1657 4.9882 4.4736 17 6 12.0551 5.1439 5.5617 18 1 12.3589 4.2827 6.1383 19 6 12.5417 6.4139 5.8915 20 7 12.4693 7.3884 5.0216 21 14 13.2875 6.7198 7.5766 22 1 14.4576 5.8260 7.7696 23 1 13.7240 8.1357 7.6752 24 1 12.2734 6.4408 8.6249 25 6 10.3705 6.0683 4.0480 26 6 9.5132 5.9072 2.9836 27 6 6.1478 4.1315 0.6102 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1233 0.8323 -1.1973 36 1 3.6304 -0.1147 -1.4042 37 1 3.7452 1.5258 -2.0852 38 1 3.5485 3.2238 1.1138 39 1 3.8378 3.4188 -0.6317 40 1 5.1024 2.3763 2.6006 41 1 5.9082 0.9942 1.7862 42 1 8.0219 2.1376 1.6882 43 1 7.3966 2.6964 3.2699 44 1 8.3643 5.4693 0.6610 45 1 8.8704 3.7714 0.4904 46 1 10.1185 2.6617 2.2437 47 1 11.6684 2.9138 4.1323 48 1 12.8069 8.2685 5.2500 49 1 10.4359 7.0212 4.5520 50 1 8.9051 6.7360 2.6523 51 1 5.3679 4.8445 0.8773 52 1 6.6138 4.4236 -0.3309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343616492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:58 Heat of formation + Delta-G solvation = 12.728269 kcal Electronic energy + Delta-G solvation = -25920.365501 eV Core-core repulsion = 22497.549477 eV Total energy + Delta-G solvation = -3422.816024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.39775 -37.97631 -37.07623 -34.22921 -33.54064 -31.97214 -29.80396 -29.27922 -29.07637 -27.49548 -26.78077 -25.52832 -23.45913 -22.69322 -21.16777 -20.91731 -20.61861 -19.93716 -19.63367 -17.23381 -16.43511 -15.96485 -15.56123 -15.30396 -15.15793 -14.58885 -14.46753 -14.04949 -13.98822 -13.59677 -13.35099 -13.26967 -13.07189 -12.63164 -12.47073 -12.36084 -12.15897 -12.02612 -11.89960 -11.82864 -11.60146 -11.42412 -11.40046 -11.09042 -10.99833 -10.93917 -10.89974 -10.78339 -10.62901 -10.46504 -10.29095 -10.25013 -9.50747 -9.30555 -9.07549 -8.55749 -7.86144 -7.37108 -7.22989 -6.71079 -4.29231 2.80729 3.08994 3.11817 3.14685 3.23547 3.61289 3.96647 4.40799 4.54393 4.65088 4.70784 4.74957 4.78300 4.99211 5.03072 5.09556 5.15014 5.22960 5.31146 5.42029 5.44809 5.47367 5.57105 5.58482 5.65282 5.71037 5.75685 5.77158 5.83470 5.84972 5.92509 5.96235 6.00684 6.13336 6.18785 6.28416 6.41494 6.44587 6.44911 6.53003 6.81163 6.83550 7.01668 7.12176 7.34285 7.38629 7.47305 7.55378 7.68316 7.94705 8.11500 8.22016 8.36475 8.70690 8.95388 9.04447 10.23522 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.002003 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.660761 B =13973.604714 C =14172.331722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.020 3.980 6 C 0.068 3.932 7 C -0.106 4.106 8 H 0.073 0.927 9 C -0.110 4.110 10 C 0.049 3.951 11 N -0.521 5.521 12 C 0.116 3.884 13 C -0.205 4.205 14 C -0.083 4.083 15 C -0.227 4.227 16 C 0.112 3.888 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.907 3.093 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.264 1.264 25 C -0.167 4.167 26 C -0.080 4.080 27 C 0.046 3.954 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.280 0.720 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.071 0.929 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 -9.349 -10.500 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.126 4.126 8 H 0.091 0.909 9 C -0.148 4.148 10 C -0.079 4.079 11 N -0.245 5.245 12 C -0.010 4.010 13 C -0.206 4.206 14 C -0.102 4.102 15 C -0.247 4.247 16 C 0.109 3.891 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.141 4.141 20 N -0.420 5.420 21 Si 0.731 3.269 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.188 1.188 25 C -0.186 4.186 26 C -0.099 4.099 27 C -0.083 4.083 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.091 0.909 49 H 0.134 0.866 50 H 0.104 0.896 51 H 0.089 0.911 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.883 -9.036 -9.763 22.288 hybrid contribution 0.450 0.244 -0.675 0.847 sum -17.433 -8.792 -10.439 22.140 Atomic orbital electron populations 1.21741 0.95710 1.01736 1.01746 1.21545 0.95275 0.96454 1.02675 1.22164 0.87276 0.97206 1.00690 1.61962 1.07214 1.22507 1.34682 1.22471 1.01084 0.99688 0.89607 1.22117 0.94967 0.88475 1.00400 1.22416 0.94548 0.96921 0.98672 0.90892 1.22636 0.96975 0.99641 0.95516 1.23006 0.95757 0.87854 1.01267 1.63715 1.06659 1.22619 1.31524 1.20921 0.87285 0.98319 0.94517 1.18842 1.03889 0.95123 1.02789 1.20337 0.96956 0.95789 0.97112 1.20920 1.04843 0.98585 1.00357 1.17610 0.89922 0.90856 0.90697 1.19551 1.23922 0.93579 1.12360 0.90613 1.25897 0.94523 0.95712 0.97973 1.69823 1.35491 1.02917 1.33730 0.86395 0.79892 0.77875 0.82695 1.19076 1.20392 1.18848 1.21295 0.97939 1.00241 0.99148 1.20480 0.97851 0.95157 0.96434 1.22836 0.95610 0.95878 0.93950 0.92568 0.92601 0.92987 0.92081 0.91054 0.90801 0.95163 0.91139 0.91333 0.95907 0.90415 0.95012 0.91035 0.91139 0.94068 0.90226 0.91907 0.95941 0.90053 0.89263 0.90909 0.86585 0.89601 0.91059 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.85 5.86 -26.73 -0.16 -1.01 16 3 C 0.05 0.43 4.96 -3.83 -0.02 0.41 16 4 N -0.54 -4.98 4.68 -242.92 -1.14 -6.12 16 5 C 0.02 0.16 9.15 60.07 0.55 0.71 16 6 C 0.07 0.67 4.25 -3.82 -0.02 0.65 16 7 C -0.11 -1.19 2.89 -88.80 -0.26 -1.45 16 8 H 0.07 0.82 6.31 -51.93 -0.33 0.50 16 9 C -0.11 -1.37 6.44 -24.60 -0.16 -1.53 16 10 C 0.05 0.76 5.60 -2.30 -0.01 0.74 16 11 N -0.52 -8.61 5.15 -232.71 -1.20 -9.81 16 12 C 0.12 2.11 4.71 -4.98 -0.02 2.09 16 13 C -0.20 -4.52 5.12 -104.33 -0.53 -5.05 16 14 C -0.08 -1.88 8.88 -39.66 -0.35 -2.23 16 15 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 16 C 0.11 3.03 5.57 -106.83 -0.60 2.44 16 17 C -0.46 -12.55 9.05 -37.74 -0.34 -12.89 16 18 H 0.08 1.97 7.91 -52.48 -0.42 1.55 16 19 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 20 N -0.79 -20.85 10.95 55.55 0.61 -20.24 16 21 Si 0.91 18.96 29.60 -169.99 -5.03 13.93 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 25 C -0.17 -4.43 8.70 -38.88 -0.34 -4.77 16 26 C -0.08 -1.92 9.67 -39.66 -0.38 -2.31 16 27 C 0.05 0.60 6.46 -2.84 -0.02 0.58 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.42 6.47 -51.93 -0.34 0.08 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.59 7.93 -51.93 -0.41 0.18 16 34 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 35 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 36 H 0.07 0.51 6.30 -51.93 -0.33 0.18 16 37 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.78 7.79 -51.93 -0.40 0.37 16 39 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.65 6.97 -51.93 -0.36 0.29 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.06 1.10 7.97 -51.93 -0.41 0.68 16 45 H 0.02 0.39 7.79 -51.93 -0.40 -0.01 16 46 H 0.08 1.65 7.46 -52.49 -0.39 1.25 16 47 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 48 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 49 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 50 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 51 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 52 H 0.05 0.61 7.55 -51.93 -0.39 0.22 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -27.45 400.24 -12.93 -40.38 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -9.44 Total: 4.16 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -2.76 Total: -28.32 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -1.73 Total: -36.17 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -27.45 -12.93 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343616492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.107 kcal (2) G-P(sol) polarization free energy of solvation -27.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds