Wall clock time and date at job start Tue Mar 31 2020 11:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 N 1.46898 * 109.47070 * 179.97438 * 3 2 1 5 5 C 1.46901 * 111.00295 * 66.04402 * 4 3 2 6 6 C 1.46902 * 110.99923 * 190.00055 * 4 3 2 7 7 C 1.53004 * 109.47073 * 169.99955 * 6 4 3 8 8 H 1.09001 * 110.76220 * 51.79718 * 7 6 4 9 9 C 1.55135 * 110.70574 * 288.59587 * 7 6 4 10 10 C 1.54900 * 101.65523 * 205.96279 * 9 7 6 11 11 N 1.47846 * 104.79398 * 37.07167 * 10 9 7 12 12 C 1.46902 * 110.99994 * 213.63372 * 11 10 9 13 13 C 1.50693 * 109.47545 * 290.84550 * 12 11 10 14 14 C 1.38641 * 119.75401 * 89.99618 * 13 12 11 15 15 C 1.37615 * 120.25201 * 180.02562 * 14 13 12 16 16 C 1.40718 * 119.74259 * 359.97438 * 15 14 13 17 17 C 1.41394 * 120.23973 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00336 * 335.72682 * 17 16 15 19 19 C 1.39951 * 119.99753 * 155.72525 * 17 16 15 20 20 N 1.30822 * 120.00049 * 342.30217 * 19 17 16 21 21 Si 1.86805 * 119.99867 * 162.02452 * 19 17 16 22 22 H 1.48496 * 109.47001 * 59.99845 * 21 19 17 23 23 H 1.48494 * 109.46996 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47127 * 300.00154 * 21 19 17 25 25 C 1.40712 * 119.51293 * 0.27552 * 16 15 14 26 26 C 1.37613 * 119.74592 * 359.42497 * 25 16 15 27 27 C 1.47440 * 108.56862 * 335.90429 * 11 10 9 28 28 H 1.08996 * 109.47329 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47398 * 300.00646 * 1 2 3 30 30 H 1.09009 * 109.46741 * 60.00303 * 1 2 3 31 31 H 1.08996 * 109.47004 * 239.99711 * 2 1 3 32 32 H 1.09000 * 109.46549 * 119.99713 * 2 1 3 33 33 H 1.09002 * 109.47045 * 59.99858 * 3 2 1 34 34 H 1.08996 * 109.46974 * 299.99751 * 3 2 1 35 35 H 1.08994 * 109.47256 * 183.95045 * 5 4 3 36 36 H 1.08994 * 109.46879 * 303.95728 * 5 4 3 37 37 H 1.09006 * 109.46330 * 63.95110 * 5 4 3 38 38 H 1.08998 * 109.47564 * 49.99774 * 6 4 3 39 39 H 1.09004 * 109.46915 * 289.99519 * 6 4 3 40 40 H 1.08995 * 110.99611 * 324.05861 * 9 7 6 41 41 H 1.09006 * 110.98804 * 87.83669 * 9 7 6 42 42 H 1.08998 * 110.37615 * 278.24340 * 10 9 7 43 43 H 1.08998 * 110.37705 * 155.89964 * 10 9 7 44 44 H 1.08994 * 109.47099 * 170.84192 * 12 11 10 45 45 H 1.09004 * 109.46790 * 50.84178 * 12 11 10 46 46 H 1.07998 * 119.87037 * 0.02562 * 14 13 12 47 47 H 1.07997 * 120.12414 * 180.02562 * 15 14 13 48 48 H 0.96998 * 119.99844 * 180.02562 * 20 19 17 49 49 H 1.08004 * 120.12440 * 179.69959 * 25 16 15 50 50 H 1.08000 * 119.88062 * 180.27048 * 26 25 16 51 51 H 1.08992 * 109.89029 * 120.39613 * 27 11 10 52 52 H 1.08999 * 109.88958 * 241.58736 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0353 2.7932 0.2388 7 6 5.5442 2.7172 0.4804 8 1 6.0357 2.1601 -0.3172 9 6 5.8471 2.0799 1.8620 10 6 7.2309 2.6925 2.1926 11 7 7.1639 4.0766 1.6771 12 6 8.4741 4.5170 1.1797 13 6 9.4220 4.6830 2.3394 14 6 10.1969 3.6105 2.7535 15 6 11.0655 3.7505 3.8117 16 6 11.1657 4.9882 4.4736 17 6 12.0551 5.1439 5.5617 18 1 12.3589 4.2827 6.1383 19 6 12.5417 6.4139 5.8915 20 7 12.4693 7.3884 5.0216 21 14 13.2875 6.7198 7.5766 22 1 14.4576 5.8260 7.7696 23 1 13.7240 8.1357 7.6752 24 1 12.2734 6.4408 8.6249 25 6 10.3705 6.0683 4.0480 26 6 9.5132 5.9072 2.9836 27 6 6.1478 4.1315 0.6102 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.1233 0.8323 -1.1973 36 1 3.6304 -0.1147 -1.4042 37 1 3.7452 1.5258 -2.0852 38 1 3.5485 3.2238 1.1138 39 1 3.8378 3.4188 -0.6317 40 1 5.1024 2.3763 2.6006 41 1 5.9082 0.9942 1.7862 42 1 8.0219 2.1376 1.6882 43 1 7.3966 2.6964 3.2699 44 1 8.3643 5.4693 0.6610 45 1 8.8704 3.7714 0.4904 46 1 10.1185 2.6617 2.2437 47 1 11.6684 2.9138 4.1323 48 1 12.8069 8.2685 5.2500 49 1 10.4359 7.0212 4.5520 50 1 8.9051 6.7360 2.6523 51 1 5.3679 4.8445 0.8773 52 1 6.6138 4.4236 -0.3309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343616492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:57 Heat of formation + Delta-G solvation = -1.221598 kcal Electronic energy + Delta-G solvation = -25920.970413 eV Core-core repulsion = 22497.549477 eV Total energy + Delta-G solvation = -3423.420936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52021 -39.33946 -38.33125 -35.79387 -34.60788 -33.21115 -31.40638 -31.04469 -30.29737 -28.31871 -28.05875 -26.59547 -25.03341 -23.50634 -22.82913 -22.22624 -21.59869 -21.24214 -20.86900 -19.19378 -17.44364 -17.11547 -16.61085 -16.53077 -16.26169 -15.84577 -15.63125 -15.58519 -15.19339 -14.91788 -14.53643 -14.38650 -14.17519 -13.81740 -13.79490 -13.64272 -13.39659 -13.23220 -13.01329 -12.82209 -12.73840 -12.64409 -12.59204 -12.54488 -12.34192 -12.11997 -12.04161 -11.93036 -11.80059 -11.55726 -11.45845 -11.36238 -11.27494 -11.15625 -10.98503 -9.32137 -9.26374 -9.23360 -9.03998 -8.61815 -6.30892 0.97978 1.17866 1.37649 1.48981 1.54012 2.21406 2.70411 2.92574 3.27515 3.72024 3.79960 3.81847 3.97317 4.09279 4.16796 4.27882 4.32279 4.37793 4.44567 4.47055 4.48942 4.53291 4.58495 4.59001 4.64206 4.73675 4.75594 4.80691 4.82063 4.87300 4.88286 4.96476 5.04819 5.07727 5.11996 5.16928 5.18862 5.22453 5.23857 5.32339 5.40512 5.42382 5.46383 5.49619 5.73563 5.96287 6.11851 6.13259 6.14908 6.18411 6.30472 6.33888 6.41808 6.73489 6.96602 7.07102 8.35224 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032754 B = 0.002003 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.660761 B =13973.604714 C =14172.331722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.550 5.550 5 C 0.020 3.980 6 C 0.074 3.926 7 C -0.093 4.093 8 H 0.078 0.922 9 C -0.099 4.099 10 C 0.048 3.952 11 N -0.539 5.539 12 C 0.123 3.877 13 C -0.193 4.193 14 C -0.082 4.082 15 C -0.243 4.243 16 C 0.078 3.922 17 C -0.504 4.504 18 H 0.073 0.927 19 C 0.035 3.965 20 N -0.827 5.827 21 Si 0.982 3.018 22 H -0.259 1.259 23 H -0.267 1.267 24 H -0.262 1.262 25 C -0.191 4.191 26 C -0.088 4.088 27 C 0.047 3.953 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.040 0.960 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.287 0.713 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.076 0.924 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.376 -10.100 -11.643 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.072 4.072 4 N -0.274 5.274 5 C -0.128 4.128 6 C -0.054 4.054 7 C -0.113 4.113 8 H 0.096 0.904 9 C -0.137 4.137 10 C -0.080 4.080 11 N -0.263 5.263 12 C -0.004 4.004 13 C -0.194 4.194 14 C -0.100 4.100 15 C -0.263 4.263 16 C 0.076 3.924 17 C -0.534 4.534 18 H 0.091 0.909 19 C -0.180 4.180 20 N -0.453 5.453 21 Si 0.802 3.198 22 H -0.183 1.183 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.210 4.210 26 C -0.106 4.106 27 C -0.081 4.081 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.053 0.947 46 H 0.127 0.873 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.116 0.884 50 H 0.119 0.881 51 H 0.095 0.905 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.293 -9.799 -10.926 24.241 hybrid contribution 0.782 0.421 -0.442 0.992 sum -18.511 -9.377 -11.368 23.661 Atomic orbital electron populations 1.21721 0.94849 1.02178 1.01948 1.21504 0.95991 0.95753 1.02298 1.22183 0.86527 0.97789 1.00737 1.61958 1.08005 1.22086 1.35366 1.22480 1.00856 1.00153 0.89276 1.22004 0.93727 0.89049 1.00599 1.22307 0.95625 0.95498 0.97880 0.90362 1.22534 0.94942 0.99983 0.96204 1.22957 0.97606 0.87785 0.99620 1.63566 1.06287 1.23291 1.33162 1.20825 0.87405 0.99405 0.92800 1.19290 1.03398 0.93921 1.02832 1.20622 0.95950 0.97163 0.96283 1.21132 1.05789 0.98171 1.01214 1.17962 0.90790 0.91973 0.91720 1.19797 1.25442 0.94620 1.13497 0.90874 1.26757 0.94604 0.94896 1.01729 1.69878 1.36292 1.03500 1.35590 0.85266 0.79017 0.78286 0.77203 1.18309 1.19089 1.18643 1.21255 0.99473 0.99640 1.00644 1.20717 0.97439 0.96601 0.95879 1.22874 0.94817 0.97217 0.93239 0.92034 0.92603 0.92582 0.91856 0.91980 0.90990 0.94841 0.91475 0.90569 0.95573 0.90692 0.94336 0.91373 0.90296 0.94176 0.92809 0.90999 0.94680 0.87305 0.88809 0.90206 0.88416 0.88086 0.90531 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.44 5.86 30.59 0.18 -1.26 16 3 C 0.06 0.77 4.96 86.30 0.43 1.20 16 4 N -0.55 -8.90 4.68 -922.46 -4.32 -13.22 16 5 C 0.02 0.29 9.15 127.69 1.17 1.45 16 6 C 0.07 1.27 4.25 86.30 0.37 1.63 16 7 C -0.09 -1.86 2.89 -9.61 -0.03 -1.89 16 8 H 0.08 1.52 6.31 -2.39 -0.02 1.51 16 9 C -0.10 -2.28 6.44 31.98 0.21 -2.07 16 10 C 0.05 1.43 5.60 86.77 0.49 1.91 16 11 N -0.54 -16.81 5.15 -890.15 -4.59 -21.40 16 12 C 0.12 4.20 4.71 85.55 0.40 4.60 16 13 C -0.19 -8.37 5.12 -19.67 -0.10 -8.47 16 14 C -0.08 -3.65 8.88 22.22 0.20 -3.46 16 15 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 16 C 0.08 4.39 5.57 -21.29 -0.12 4.27 16 17 C -0.50 -28.31 9.05 23.46 0.21 -28.09 16 18 H 0.07 3.96 7.91 -2.91 -0.02 3.94 16 19 C 0.03 1.81 5.14 85.26 0.44 2.25 16 20 N -0.83 -44.69 10.95 21.83 0.24 -44.45 16 21 Si 0.98 39.46 29.60 68.60 2.03 41.49 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 C -0.19 -10.49 8.70 22.73 0.20 -10.29 16 26 C -0.09 -4.23 9.67 22.22 0.21 -4.01 16 27 C 0.05 1.10 6.46 86.65 0.56 1.66 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.74 6.47 -2.39 -0.02 0.73 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 34 H 0.03 0.45 8.12 -2.39 -0.02 0.43 16 35 H 0.07 0.99 6.34 -2.39 -0.02 0.98 16 36 H 0.08 0.95 6.30 -2.39 -0.02 0.94 16 37 H 0.03 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.07 1.33 7.79 -2.39 -0.02 1.32 16 39 H 0.04 0.62 8.12 -2.38 -0.02 0.60 16 40 H 0.07 1.63 7.94 -2.39 -0.02 1.61 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.04 1.19 6.97 -2.39 -0.02 1.18 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.07 2.34 7.97 -2.39 -0.02 2.32 16 45 H 0.04 1.12 7.79 -2.39 -0.02 1.11 16 46 H 0.11 4.22 7.46 -2.91 -0.02 4.20 16 47 H 0.09 4.56 8.06 -2.91 -0.02 4.53 16 48 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 49 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 50 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 51 H 0.08 1.75 7.82 -2.39 -0.02 1.73 16 52 H 0.06 1.28 7.55 -2.39 -0.02 1.26 16 Total: -1.00 -60.42 400.24 -0.03 -60.45 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.86 Total: 30.67 kcal Atomic # 6 Polarization: -59.28 SS G_CDS: 5.75 Total: -53.53 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -8.66 Total: -79.07 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -60.42 -0.03 -60.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343616492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.229 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds