Wall clock time and date at job start Tue Mar 31 2020 11:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49003 * 2 1 4 4 C 1.53051 * 109.51025 * 239.94141 * 2 1 3 5 5 N 1.46950 * 109.36695 * 181.62206 * 4 2 1 6 6 C 1.46899 * 111.00175 * 183.19167 * 5 4 2 7 7 C 1.52996 * 109.46932 * 293.95389 * 6 5 4 8 8 C 1.53004 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46830 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00562 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00247 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99340 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00497 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47059 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47199 * 119.99846 * 13 11 9 16 16 H 1.48501 * 109.47030 * 239.99798 * 13 11 9 17 17 C 1.46956 * 110.88187 * 59.32281 * 5 4 2 18 18 H 1.08997 * 109.48680 * 60.66635 * 17 5 4 19 19 C 1.52996 * 109.48980 * 180.71400 * 17 5 4 20 20 C 1.53055 * 109.36416 * 300.68087 * 17 5 4 21 21 N 1.46956 * 109.48488 * 120.04212 * 2 1 3 22 22 C 1.46894 * 111.00196 * 303.17568 * 21 2 1 23 23 C 1.50708 * 109.47301 * 170.00056 * 22 21 2 24 24 C 1.38225 * 120.00071 * 269.73234 * 23 22 21 25 25 C 1.38240 * 119.99771 * 179.79011 * 24 23 22 26 26 C 1.38230 * 119.99842 * 0.43332 * 25 24 23 27 27 C 1.38232 * 120.00132 * 359.82198 * 26 25 24 28 28 C 1.38228 * 120.00349 * 359.96963 * 27 26 25 29 29 H 1.09001 * 109.47066 * 299.95574 * 1 2 3 30 30 H 1.09002 * 109.47095 * 59.95864 * 1 2 3 31 31 H 1.09008 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.49056 * 301.58966 * 4 2 1 33 33 H 1.09004 * 109.48450 * 61.64963 * 4 2 1 34 34 H 1.08998 * 109.46866 * 53.94982 * 6 5 4 35 35 H 1.08999 * 109.47155 * 173.95112 * 6 5 4 36 36 H 1.08997 * 109.47233 * 300.00009 * 7 6 5 37 37 H 1.08999 * 109.47427 * 59.99889 * 7 6 5 38 38 H 1.08998 * 109.47308 * 299.99288 * 8 7 6 39 39 H 1.09001 * 109.47317 * 60.00483 * 8 7 6 40 40 H 0.97001 * 119.99827 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47409 * 59.99664 * 19 17 5 42 42 H 1.09002 * 109.47197 * 179.97438 * 19 17 5 43 43 H 1.09001 * 109.47362 * 299.99801 * 19 17 5 44 44 H 1.09003 * 109.48892 * 298.43380 * 20 17 5 45 45 H 1.08994 * 109.49074 * 178.36765 * 20 17 5 46 46 H 1.09002 * 109.47456 * 290.00131 * 22 21 2 47 47 H 1.09004 * 109.47211 * 50.00211 * 22 21 2 48 48 H 1.07998 * 120.00266 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99788 * 180.27382 * 25 24 23 50 50 H 1.08002 * 119.99747 * 179.83514 * 26 25 24 51 51 H 1.08005 * 119.99808 * 180.02562 * 27 26 25 52 52 H 1.07996 * 120.00707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2259 6 6 4.0421 -1.3746 -2.4469 7 6 3.6461 -2.8520 -2.4830 8 6 4.1996 -3.4974 -3.7550 9 6 3.8091 -4.9525 -3.7908 10 1 3.2249 -5.3749 -2.9866 11 6 4.1983 -5.7450 -4.8498 12 7 4.9101 -5.2309 -5.8289 13 14 3.7149 -7.5488 -4.8939 14 1 2.9216 -7.8783 -3.6826 15 1 2.9002 -7.8134 -6.1068 16 1 4.9391 -8.3887 -4.9269 17 6 4.0004 -1.4484 -0.0267 18 1 3.6371 -2.4760 -0.0269 19 6 5.5304 -1.4479 -0.0264 20 6 3.4893 -0.7258 1.2220 21 7 2.0202 -0.6936 1.1993 22 6 1.4884 -0.0737 2.4202 23 6 1.8063 -0.9472 3.6066 24 6 0.9161 -1.9285 4.0006 25 6 1.2098 -2.7326 5.0861 26 6 2.3894 -2.5492 5.7829 27 6 3.2771 -1.5643 5.3921 28 6 2.9856 -0.7631 4.3041 29 1 -0.3633 0.5131 0.8904 30 1 -0.3633 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6553 -1.7419 -1.2625 33 1 1.7027 -0.1931 -2.1393 34 1 3.6321 -0.8672 -3.3202 35 1 5.1287 -1.2894 -2.4540 36 1 4.0560 -3.3594 -1.6097 37 1 2.5595 -2.9373 -2.4760 38 1 3.7893 -2.9900 -4.6281 39 1 5.2863 -3.4123 -3.7625 40 1 5.1837 -5.7882 -6.5742 41 1 5.8935 -0.4201 -0.0255 42 1 5.8937 -1.9620 0.8635 43 1 5.8941 -1.9608 -0.9167 44 1 3.8752 0.2935 1.2359 45 1 3.8277 -1.2552 2.1126 46 1 1.9444 0.9066 2.5584 47 1 0.4078 0.0376 2.3302 48 1 -0.0074 -2.0691 3.4586 49 1 0.5163 -3.5022 5.3912 50 1 2.6175 -3.1756 6.6327 51 1 4.1990 -1.4213 5.9364 52 1 3.6793 0.0061 3.9984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347586650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:30 Heat of formation + Delta-G solvation = 24.083582 kcal Electronic energy + Delta-G solvation = -27179.706730 eV Core-core repulsion = 23757.383109 eV Total energy + Delta-G solvation = -3422.323621 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16696 -39.03836 -36.48778 -33.60643 -33.29288 -32.07804 -31.05040 -30.66456 -29.39097 -27.71309 -25.86318 -24.86460 -24.09120 -22.90882 -22.40635 -21.35489 -20.90842 -20.26616 -18.64149 -16.97484 -16.34000 -16.14857 -15.78705 -15.40049 -15.32259 -14.92892 -14.68475 -14.36362 -14.09017 -13.83566 -13.60879 -13.48645 -13.07265 -12.77916 -12.68777 -12.46485 -12.26384 -12.05778 -11.91665 -11.71973 -11.62858 -11.45593 -11.31566 -11.19580 -11.06793 -10.91888 -10.82189 -10.68088 -10.54487 -10.45953 -10.17576 -9.54194 -9.38428 -9.12878 -9.04950 -8.92248 -8.34071 -8.32678 -7.78804 -5.97588 -3.99705 1.17897 1.26260 3.31991 3.39404 3.44142 3.51061 4.00613 4.19563 4.48152 4.57821 4.67110 4.83861 4.85237 4.93104 4.99492 5.08694 5.18626 5.32093 5.33143 5.36113 5.37943 5.43603 5.48991 5.52532 5.62519 5.71453 5.75013 5.81541 5.84295 5.87604 5.88721 5.92188 5.99740 6.02909 6.11863 6.22862 6.25784 6.30445 6.36182 6.39370 6.44629 6.48101 6.67172 6.83180 6.86076 7.01964 7.04955 7.12057 7.43915 7.50431 7.70099 7.84861 8.02537 8.46442 9.07599 9.64334 11.13514 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003041 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.509289 B = 9206.762428 C = 9935.024257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 H 0.046 0.954 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.051 3.949 7 C -0.143 4.143 8 C 0.026 3.974 9 C -0.518 4.518 10 H 0.053 0.947 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.890 3.110 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.080 3.920 18 H 0.057 0.943 19 C -0.146 4.146 20 C 0.063 3.937 21 N -0.528 5.528 22 C 0.088 3.912 23 C -0.073 4.073 24 C -0.099 4.099 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 12.749 21.246 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 H 0.064 0.936 4 C -0.069 4.069 5 N -0.261 5.261 6 C -0.076 4.076 7 C -0.182 4.182 8 C -0.012 4.012 9 C -0.556 4.556 10 H 0.071 0.929 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.718 3.282 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.028 4.028 18 H 0.075 0.925 19 C -0.204 4.204 20 C -0.065 4.065 21 N -0.253 5.253 22 C -0.039 4.039 23 C -0.074 4.074 24 C -0.117 4.117 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.058 0.942 47 H 0.106 0.894 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.394 12.734 21.066 25.433 hybrid contribution -0.156 -1.162 -0.168 1.185 sum -6.550 11.571 20.898 24.769 Atomic orbital electron populations 1.21911 0.94327 1.02787 1.01580 1.21674 0.94853 0.95932 0.89840 0.93604 1.22154 0.88354 0.99996 0.96353 1.62503 1.07642 1.53302 1.02656 1.22339 1.00231 0.94332 0.90696 1.22200 1.00166 0.94535 1.01273 1.19013 0.96046 0.94911 0.91237 1.21306 1.33389 0.95080 1.05839 0.92860 1.25024 0.95240 0.98497 0.95715 1.69979 1.37700 1.35855 1.10017 0.86571 0.78284 0.85455 0.77930 1.19778 1.21016 1.21014 1.21618 0.95092 0.96839 0.89288 0.92491 1.21846 0.94256 1.01990 1.02318 1.22278 0.86632 0.99272 0.98268 1.62154 1.08843 1.53446 1.00879 1.21132 1.00997 0.94068 0.87702 1.19761 0.94641 0.97107 0.95884 1.21021 0.99550 0.94809 0.96328 1.21158 0.97316 0.99419 0.96057 1.21136 0.94634 0.98309 1.00064 1.21104 0.99462 0.96151 0.97261 1.21068 0.96551 0.99886 0.95815 0.92523 0.91927 0.91596 0.93227 0.90549 0.91352 0.90768 0.93171 0.93461 0.96740 0.96709 0.93116 0.92381 0.92599 0.91322 0.94517 0.90279 0.94218 0.89405 0.86052 0.86189 0.86330 0.86247 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.89 37.16 0.33 -1.12 16 2 C 0.09 1.01 2.56 -67.65 -0.17 0.84 16 3 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.06 0.85 4.55 -3.77 -0.02 0.84 16 5 N -0.54 -8.24 4.73 -226.50 -1.07 -9.32 16 6 C 0.05 0.90 4.83 -3.83 -0.02 0.88 16 7 C -0.14 -3.00 4.44 -26.73 -0.12 -3.12 16 8 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 9 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 10 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 C 0.08 1.18 2.01 -67.66 -0.14 1.04 16 18 H 0.06 0.98 6.45 -51.93 -0.33 0.65 16 19 C -0.15 -2.00 8.86 37.16 0.33 -1.67 16 20 C 0.06 0.80 4.54 -3.76 -0.02 0.78 16 21 N -0.53 -6.39 4.52 -227.92 -1.03 -7.42 16 22 C 0.09 0.88 4.89 -4.98 -0.02 0.86 16 23 C -0.07 -0.76 4.89 -104.62 -0.51 -1.27 16 24 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 27 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 28 C -0.11 -1.12 7.92 -39.58 -0.31 -1.43 16 29 H 0.06 0.47 6.15 -51.93 -0.32 0.15 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.81 6.63 -51.93 -0.34 0.46 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.07 1.31 6.38 -51.93 -0.33 0.97 16 36 H 0.05 1.07 6.44 -51.93 -0.33 0.74 16 37 H 0.05 1.01 6.62 -51.93 -0.34 0.67 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.05 6.40 -51.93 -0.33 0.72 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 46 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 47 H 0.09 0.79 5.67 -51.93 -0.29 0.50 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 49 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 51 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 52 H 0.12 1.03 7.99 -52.49 -0.42 0.61 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -30.86 393.52 -12.49 -43.35 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -9.24 Total: -0.48 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -2.80 Total: -22.55 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -1.36 Total: -43.29 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.86 -12.49 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.430 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds