Wall clock time and date at job start Tue Mar 31 2020 11:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49003 * 2 1 4 4 C 1.53051 * 109.51025 * 239.94141 * 2 1 3 5 5 N 1.46950 * 109.36695 * 181.62206 * 4 2 1 6 6 C 1.46899 * 111.00175 * 183.19167 * 5 4 2 7 7 C 1.52996 * 109.46932 * 293.95389 * 6 5 4 8 8 C 1.53004 * 109.46947 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46830 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00562 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00247 * 180.02562 * 9 8 7 12 12 N 1.31521 * 119.99340 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00497 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47059 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47199 * 119.99846 * 13 11 9 16 16 H 1.48501 * 109.47030 * 239.99798 * 13 11 9 17 17 C 1.46956 * 110.88187 * 59.32281 * 5 4 2 18 18 H 1.08997 * 109.48680 * 60.66635 * 17 5 4 19 19 C 1.52996 * 109.48980 * 180.71400 * 17 5 4 20 20 C 1.53055 * 109.36416 * 300.68087 * 17 5 4 21 21 N 1.46956 * 109.48488 * 120.04212 * 2 1 3 22 22 C 1.46894 * 111.00196 * 303.17568 * 21 2 1 23 23 C 1.50708 * 109.47301 * 170.00056 * 22 21 2 24 24 C 1.38225 * 120.00071 * 269.73234 * 23 22 21 25 25 C 1.38240 * 119.99771 * 179.79011 * 24 23 22 26 26 C 1.38230 * 119.99842 * 0.43332 * 25 24 23 27 27 C 1.38232 * 120.00132 * 359.82198 * 26 25 24 28 28 C 1.38228 * 120.00349 * 359.96963 * 27 26 25 29 29 H 1.09001 * 109.47066 * 299.95574 * 1 2 3 30 30 H 1.09002 * 109.47095 * 59.95864 * 1 2 3 31 31 H 1.09008 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.49056 * 301.58966 * 4 2 1 33 33 H 1.09004 * 109.48450 * 61.64963 * 4 2 1 34 34 H 1.08998 * 109.46866 * 53.94982 * 6 5 4 35 35 H 1.08999 * 109.47155 * 173.95112 * 6 5 4 36 36 H 1.08997 * 109.47233 * 300.00009 * 7 6 5 37 37 H 1.08999 * 109.47427 * 59.99889 * 7 6 5 38 38 H 1.08998 * 109.47308 * 299.99288 * 8 7 6 39 39 H 1.09001 * 109.47317 * 60.00483 * 8 7 6 40 40 H 0.97001 * 119.99827 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.47409 * 59.99664 * 19 17 5 42 42 H 1.09002 * 109.47197 * 179.97438 * 19 17 5 43 43 H 1.09001 * 109.47362 * 299.99801 * 19 17 5 44 44 H 1.09003 * 109.48892 * 298.43380 * 20 17 5 45 45 H 1.08994 * 109.49074 * 178.36765 * 20 17 5 46 46 H 1.09002 * 109.47456 * 290.00131 * 22 21 2 47 47 H 1.09004 * 109.47211 * 50.00211 * 22 21 2 48 48 H 1.07998 * 120.00266 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99788 * 180.27382 * 25 24 23 50 50 H 1.08002 * 119.99747 * 179.83514 * 26 25 24 51 51 H 1.08005 * 119.99808 * 180.02562 * 27 26 25 52 52 H 1.07996 * 120.00707 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7226 -1.2486 5 7 3.5102 -0.7548 -1.2259 6 6 4.0421 -1.3746 -2.4469 7 6 3.6461 -2.8520 -2.4830 8 6 4.1996 -3.4974 -3.7550 9 6 3.8091 -4.9525 -3.7908 10 1 3.2249 -5.3749 -2.9866 11 6 4.1983 -5.7450 -4.8498 12 7 4.9101 -5.2309 -5.8289 13 14 3.7149 -7.5488 -4.8939 14 1 2.9216 -7.8783 -3.6826 15 1 2.9002 -7.8134 -6.1068 16 1 4.9391 -8.3887 -4.9269 17 6 4.0004 -1.4484 -0.0267 18 1 3.6371 -2.4760 -0.0269 19 6 5.5304 -1.4479 -0.0264 20 6 3.4893 -0.7258 1.2220 21 7 2.0202 -0.6936 1.1993 22 6 1.4884 -0.0737 2.4202 23 6 1.8063 -0.9472 3.6066 24 6 0.9161 -1.9285 4.0006 25 6 1.2098 -2.7326 5.0861 26 6 2.3894 -2.5492 5.7829 27 6 3.2771 -1.5643 5.3921 28 6 2.9856 -0.7631 4.3041 29 1 -0.3633 0.5131 0.8904 30 1 -0.3633 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6553 -1.7419 -1.2625 33 1 1.7027 -0.1931 -2.1393 34 1 3.6321 -0.8672 -3.3202 35 1 5.1287 -1.2894 -2.4540 36 1 4.0560 -3.3594 -1.6097 37 1 2.5595 -2.9373 -2.4760 38 1 3.7893 -2.9900 -4.6281 39 1 5.2863 -3.4123 -3.7625 40 1 5.1837 -5.7882 -6.5742 41 1 5.8935 -0.4201 -0.0255 42 1 5.8937 -1.9620 0.8635 43 1 5.8941 -1.9608 -0.9167 44 1 3.8752 0.2935 1.2359 45 1 3.8277 -1.2552 2.1126 46 1 1.9444 0.9066 2.5584 47 1 0.4078 0.0376 2.3302 48 1 -0.0074 -2.0691 3.4586 49 1 0.5163 -3.5022 5.3912 50 1 2.6175 -3.1756 6.6327 51 1 4.1990 -1.4213 5.9364 52 1 3.6793 0.0061 3.9984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347586650.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:29 Heat of formation + Delta-G solvation = 6.766880 kcal Electronic energy + Delta-G solvation = -27180.457639 eV Core-core repulsion = 23757.383109 eV Total energy + Delta-G solvation = -3423.074530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16067 -39.90531 -37.65405 -35.55629 -34.29268 -33.55123 -32.08540 -31.72548 -30.40221 -29.06131 -27.32933 -25.98560 -25.30075 -24.14759 -23.35026 -22.70672 -22.12486 -21.26781 -19.94942 -18.50630 -17.70357 -17.16512 -16.93830 -16.56760 -16.36371 -16.13668 -15.85022 -15.77505 -15.26328 -14.99468 -14.88908 -14.28320 -14.24837 -13.99235 -13.91166 -13.56684 -13.50258 -13.37650 -13.01772 -12.88270 -12.78440 -12.68664 -12.62865 -12.59682 -12.48266 -12.35886 -12.06165 -11.98801 -11.84041 -11.53451 -11.48796 -11.32211 -11.28313 -11.13600 -10.57973 -9.75848 -9.65777 -9.29597 -9.13505 -8.22192 -6.34066 0.46410 0.55695 1.36601 1.36735 1.50320 2.38173 2.72501 2.94972 3.09705 3.17670 3.78289 3.80807 3.91967 3.99405 4.11720 4.19859 4.25822 4.28060 4.30714 4.31040 4.36985 4.41405 4.44497 4.59437 4.62290 4.69609 4.70443 4.72539 4.79990 4.80338 4.83269 4.87513 4.94830 4.98780 5.08437 5.11102 5.16320 5.16978 5.21038 5.23946 5.33170 5.39078 5.49629 5.60663 5.67227 5.68680 5.74310 5.82139 5.99639 6.05537 6.15851 6.20987 6.24069 6.26306 6.82022 7.35127 8.88916 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003041 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.509289 B = 9206.762428 C = 9935.024257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.050 0.950 4 C 0.057 3.943 5 N -0.529 5.529 6 C 0.063 3.937 7 C -0.122 4.122 8 C 0.032 3.968 9 C -0.544 4.544 10 H 0.051 0.949 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.963 3.037 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.275 1.275 17 C 0.079 3.921 18 H 0.027 0.973 19 C -0.141 4.141 20 C 0.074 3.926 21 N -0.541 5.541 22 C 0.093 3.907 23 C -0.087 4.087 24 C -0.114 4.114 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.041 0.959 38 H -0.008 1.008 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.083 0.917 46 H 0.047 0.953 47 H 0.098 0.902 48 H 0.125 0.875 49 H 0.134 0.866 50 H 0.138 0.862 51 H 0.138 0.862 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.114 12.967 22.948 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 H 0.068 0.932 4 C -0.071 4.071 5 N -0.252 5.252 6 C -0.065 4.065 7 C -0.161 4.161 8 C -0.006 4.006 9 C -0.582 4.582 10 H 0.070 0.930 11 C -0.196 4.196 12 N -0.571 5.571 13 Si 0.787 3.213 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.029 4.029 18 H 0.045 0.955 19 C -0.199 4.199 20 C -0.054 4.054 21 N -0.266 5.266 22 C -0.033 4.033 23 C -0.087 4.087 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.147 4.147 28 C -0.142 4.142 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.065 0.935 47 H 0.116 0.884 48 H 0.143 0.857 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.156 0.844 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.043 12.965 22.785 27.145 hybrid contribution 0.053 -1.235 -0.676 1.409 sum -6.990 11.730 22.109 25.986 Atomic orbital electron populations 1.21874 0.92606 1.02508 1.03012 1.21621 0.96135 0.95397 0.88560 0.93228 1.22243 0.87453 0.99113 0.98280 1.62568 1.08460 1.52333 1.01886 1.22138 1.00360 0.91903 0.92111 1.21941 0.99265 0.96627 0.98251 1.18892 0.94583 0.94347 0.92781 1.21686 1.33795 0.96554 1.06156 0.93044 1.25952 0.94944 1.03586 0.95136 1.70096 1.38479 1.37861 1.10657 0.85434 0.78283 0.79234 0.78331 1.19017 1.20054 1.20076 1.21663 0.95798 0.95463 0.90008 0.95480 1.21804 0.93477 1.02666 1.01989 1.22132 0.87209 0.99171 0.96909 1.62132 1.08454 1.54263 1.01796 1.21137 1.01525 0.94123 0.86558 1.19869 0.95115 0.97502 0.96237 1.21203 0.99931 0.95200 0.96882 1.21425 0.97921 0.99699 0.95947 1.21448 0.94413 0.98466 1.00534 1.21400 1.00209 0.95900 0.97198 1.21251 0.96580 1.00312 0.96081 0.90666 0.90955 0.92690 0.95590 0.90031 0.91324 0.90748 0.93750 0.94064 0.98972 0.98908 0.92676 0.91123 0.91114 0.93479 0.93875 0.89894 0.93463 0.88392 0.85703 0.84763 0.84462 0.84450 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.89 71.98 0.64 -1.90 16 2 C 0.09 2.04 2.56 44.92 0.12 2.16 16 3 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.06 1.63 4.55 86.31 0.39 2.02 16 5 N -0.53 -16.15 4.73 -870.51 -4.12 -20.27 16 6 C 0.06 2.25 4.83 86.30 0.42 2.67 16 7 C -0.12 -5.31 4.44 30.59 0.14 -5.17 16 8 C 0.03 1.73 4.97 29.85 0.15 1.88 16 9 C -0.54 -32.22 9.11 25.60 0.23 -31.99 16 10 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 11 C 0.00 0.10 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 13 Si 0.96 45.43 29.54 68.60 2.03 47.46 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 C 0.08 2.32 2.01 44.92 0.09 2.41 16 18 H 0.03 0.96 6.45 -2.39 -0.02 0.94 16 19 C -0.14 -3.79 8.86 71.98 0.64 -3.15 16 20 C 0.07 1.77 4.54 86.31 0.39 2.16 16 21 N -0.54 -12.40 4.52 -874.99 -3.95 -16.36 16 22 C 0.09 1.70 4.89 85.56 0.42 2.12 16 23 C -0.09 -1.67 4.89 -19.86 -0.10 -1.77 16 24 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.13 -2.32 10.05 22.27 0.22 -2.09 16 26 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 27 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 28 C -0.12 -2.22 7.92 22.27 0.18 -2.04 16 29 H 0.07 1.07 6.15 -2.39 -0.01 1.05 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.03 0.86 6.63 -2.39 -0.02 0.84 16 33 H 0.08 2.20 8.11 -2.39 -0.02 2.18 16 34 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 35 H 0.07 2.67 6.38 -2.39 -0.02 2.66 16 36 H 0.04 1.97 6.44 -2.39 -0.02 1.95 16 37 H 0.04 1.82 6.62 -2.39 -0.02 1.81 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.05 1.46 6.40 -2.39 -0.02 1.44 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.94 5.95 -2.39 -0.01 1.92 16 46 H 0.05 0.80 8.06 -2.39 -0.02 0.78 16 47 H 0.10 1.56 5.67 -2.38 -0.01 1.55 16 48 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 49 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 50 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 51 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 52 H 0.13 1.96 7.99 -2.91 -0.02 1.94 16 Total: -1.00 -66.79 393.52 0.15 -66.64 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.86 Total: 17.78 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 5.05 Total: -37.94 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -7.79 Total: -93.94 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -66.79 0.15 -66.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586650.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.410 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds