Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50816 * 2 1 4 4 C 1.53049 * 109.49237 * 120.05467 * 2 1 3 5 5 N 1.46956 * 109.37889 * 61.55371 * 4 2 1 6 6 C 1.46907 * 111.00063 * 183.19787 * 5 4 2 7 7 C 1.50710 * 109.46537 * 66.04815 * 6 5 4 8 8 C 1.38231 * 119.99800 * 269.72383 * 7 6 5 9 9 C 1.38245 * 119.99653 * 179.80839 * 8 7 6 10 10 C 1.38229 * 119.99862 * 0.42743 * 9 8 7 11 11 C 1.38245 * 120.00246 * 359.80759 * 10 9 8 12 12 C 1.38231 * 119.99832 * 90.00351 * 7 6 5 13 13 C 1.46998 * 110.85606 * 59.31765 * 5 4 2 14 14 H 1.08997 * 109.49044 * 60.65998 * 13 5 4 15 15 C 1.53007 * 109.50195 * 180.71184 * 13 5 4 16 16 C 1.53062 * 109.37366 * 300.68752 * 13 5 4 17 17 N 1.46954 * 109.35871 * 58.40489 * 16 13 5 18 18 C 1.46903 * 110.99536 * 176.81353 * 17 16 13 19 19 C 1.53001 * 109.47128 * 313.79527 * 18 17 16 20 20 C 1.52998 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.50692 * 109.47191 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00069 * 359.97438 * 21 20 19 23 23 C 1.37885 * 120.00114 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47394 * 59.99407 * 25 23 21 27 27 H 1.48501 * 109.47228 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47044 * 299.99621 * 25 23 21 29 29 H 1.09000 * 109.46908 * 299.94574 * 1 2 3 30 30 H 1.09003 * 109.46756 * 59.94521 * 1 2 3 31 31 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.49200 * 181.53522 * 4 2 1 33 33 H 1.09002 * 109.48985 * 301.57940 * 4 2 1 34 34 H 1.08989 * 109.47352 * 186.04595 * 6 5 4 35 35 H 1.09001 * 109.47106 * 306.05350 * 6 5 4 36 36 H 1.08000 * 120.00372 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.99423 * 180.20781 * 9 8 7 38 38 H 1.08002 * 119.99952 * 179.78260 * 10 9 8 39 39 H 1.07995 * 119.99979 * 179.97438 * 11 10 9 40 40 H 1.08007 * 120.00026 * 359.97438 * 12 7 6 41 41 H 1.08994 * 109.47007 * 179.90564 * 15 13 5 42 42 H 1.08995 * 109.46659 * 299.90460 * 15 13 5 43 43 H 1.08997 * 109.46825 * 59.90793 * 15 13 5 44 44 H 1.09002 * 109.48764 * 298.44108 * 16 13 5 45 45 H 1.08993 * 109.50447 * 178.38176 * 16 13 5 46 46 H 1.09000 * 109.47502 * 73.79718 * 18 17 16 47 47 H 1.09002 * 109.47049 * 193.79794 * 18 17 16 48 48 H 1.09000 * 109.47085 * 300.00446 * 19 18 17 49 49 H 1.09002 * 109.46937 * 60.00198 * 19 18 17 50 50 H 1.09001 * 109.46979 * 300.00597 * 20 19 18 51 51 H 1.09002 * 109.47124 * 60.00130 * 20 19 18 52 52 H 0.96997 * 120.00124 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2488 5 7 1.5809 -2.1182 1.2269 6 6 1.9878 -2.8258 2.4483 7 6 1.2733 -2.2314 3.6347 8 6 1.8461 -1.1853 4.3335 9 6 1.1888 -0.6375 5.4194 10 6 -0.0370 -1.1417 5.8117 11 6 -0.6075 -2.1912 5.1158 12 6 0.0479 -2.7363 4.0276 13 6 2.0713 -2.8120 0.0273 14 1 3.1612 -2.8120 0.0273 15 6 1.5608 -4.2544 0.0270 16 6 1.5606 -2.0894 -1.2216 17 7 2.0204 -0.6938 -1.1991 18 6 1.6134 0.0142 -2.4203 19 6 1.9201 -0.8563 -3.6406 20 6 1.4969 -0.1187 -4.9125 21 6 1.7984 -0.9763 -6.1144 22 1 2.2474 -1.9499 -5.9842 23 6 1.5020 -0.5176 -7.3805 24 7 0.9557 0.6682 -7.5391 25 14 1.8763 -1.5803 -8.8704 26 1 1.1275 -2.8586 -8.7674 27 1 1.4655 -0.8645 -10.1049 28 1 3.3332 -1.8630 -8.9232 29 1 -0.3633 0.5130 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1304 -0.6988 1.2627 33 1 1.6548 -0.2265 2.1394 34 1 1.7297 -3.8810 2.3600 35 1 3.0646 -2.7252 2.5849 36 1 2.8054 -0.7935 4.0291 37 1 1.6348 0.1821 5.9632 38 1 -0.5488 -0.7161 6.6621 39 1 -1.5650 -2.5854 5.4226 40 1 -0.3976 -3.5564 3.4841 41 1 1.9233 -4.7679 -0.8635 42 1 1.9247 -4.7687 0.9164 43 1 0.4708 -4.2540 0.0278 44 1 0.4709 -2.1131 -1.2354 45 1 1.9465 -2.5851 -2.1122 46 1 0.5440 0.2211 -2.3811 47 1 2.1625 0.9527 -2.4962 48 1 2.9896 -1.0632 -3.6798 49 1 1.3710 -1.7948 -3.5647 50 1 0.4275 0.0886 -4.8735 51 1 2.0463 0.8197 -4.9883 52 1 0.7475 0.9911 -8.4298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347586652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = 28.582915 kcal Electronic energy + Delta-G solvation = -27002.214646 eV Core-core repulsion = 23580.086131 eV Total energy + Delta-G solvation = -3422.128515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28581 -39.11985 -36.35207 -33.87699 -33.09520 -32.19125 -31.12489 -30.66949 -28.98413 -27.52097 -26.08098 -25.62251 -24.23441 -22.85289 -22.34127 -21.50265 -20.87913 -19.82258 -18.56359 -17.02117 -16.54712 -16.05757 -15.91032 -15.53532 -14.98454 -14.82375 -14.74194 -14.47471 -14.32307 -13.99500 -13.63588 -13.50810 -13.01164 -12.95219 -12.71939 -12.70099 -12.25282 -12.03313 -11.97569 -11.70326 -11.53660 -11.50193 -11.36046 -11.20050 -11.16321 -10.84714 -10.83416 -10.63735 -10.55336 -10.31210 -10.21349 -9.58322 -9.30027 -9.11587 -9.02075 -8.97623 -8.36330 -8.31421 -7.89668 -5.96960 -3.99011 1.11918 1.19849 3.35012 3.39188 3.41753 3.46347 3.97770 4.17664 4.48808 4.53922 4.62485 4.78527 4.81899 4.87985 4.96370 5.05798 5.17381 5.23941 5.28049 5.34668 5.38641 5.39113 5.44970 5.49139 5.64873 5.68274 5.69517 5.76786 5.79096 5.83161 5.84607 5.92582 5.97189 6.03336 6.07306 6.16447 6.23880 6.27495 6.29746 6.37745 6.42234 6.53506 6.74777 6.77796 6.82017 6.97359 7.02697 7.13495 7.45683 7.48112 7.70825 7.86566 8.03427 8.46621 9.07891 9.64621 11.14449 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.681728 B =11593.477874 C =12044.137492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.081 0.919 4 C 0.063 3.937 5 N -0.524 5.524 6 C 0.086 3.914 7 C -0.071 4.071 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.122 4.122 12 C -0.099 4.099 13 C 0.084 3.916 14 H 0.048 0.952 15 C -0.148 4.148 16 C 0.056 3.944 17 N -0.535 5.535 18 C 0.053 3.947 19 C -0.111 4.111 20 C 0.023 3.977 21 C -0.518 4.518 22 H 0.054 0.946 23 C 0.056 3.944 24 N -0.896 5.896 25 Si 0.892 3.108 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.013 0.987 51 H 0.015 0.985 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.266 -5.841 27.348 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.065 4.065 5 N -0.250 5.250 6 C -0.041 4.041 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.117 4.117 13 C -0.024 4.024 14 H 0.066 0.934 15 C -0.206 4.206 16 C -0.073 4.073 17 N -0.259 5.259 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.015 4.015 21 C -0.557 4.557 22 H 0.072 0.928 23 C -0.145 4.145 24 N -0.536 5.536 25 Si 0.720 3.280 26 H -0.203 1.203 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.053 0.947 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.032 0.968 51 H 0.034 0.966 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.310 -5.716 27.180 27.776 hybrid contribution 0.118 -0.341 -0.874 0.945 sum -0.192 -6.057 26.306 26.995 Atomic orbital electron populations 1.22307 0.96996 1.02937 1.01264 1.21702 0.93587 0.97508 0.89950 0.90123 1.22221 0.97666 0.88688 0.97954 1.62193 1.59828 1.02057 1.00879 1.21147 0.96597 0.98625 0.87707 1.19767 0.95302 0.96243 0.95877 1.21083 1.00055 0.96368 0.95835 1.21106 0.95565 1.00032 0.97265 1.21132 0.95933 0.97112 1.00043 1.21151 0.99864 0.96919 0.96059 1.21016 0.94349 1.00027 0.96337 1.21718 0.97580 0.93467 0.89677 0.93417 1.21902 1.02170 0.94760 1.01738 1.22298 0.98665 0.89374 0.96924 1.62496 1.59084 1.02037 1.02254 1.22332 0.98406 0.97900 0.88779 1.21772 1.00677 0.98139 0.94244 1.19054 0.96432 0.95567 0.90406 1.21206 1.40493 1.02699 0.91267 0.92808 1.25030 0.95323 0.95093 0.99076 1.69955 1.43080 1.17949 1.22585 0.86667 0.78752 0.80490 0.82137 1.20281 1.21326 1.20246 0.92937 0.92682 0.91229 0.94402 0.90276 0.89371 0.94150 0.86404 0.86277 0.86379 0.86249 0.86080 0.91740 0.92557 0.91778 0.93751 0.89249 0.94654 0.91268 0.92751 0.93243 0.96842 0.96631 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.39 37.16 0.31 -2.03 16 2 C 0.08 1.08 2.97 -67.65 -0.20 0.88 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.06 0.73 4.69 -3.77 -0.02 0.71 16 5 N -0.52 -5.81 3.84 -227.88 -0.87 -6.69 16 6 C 0.09 0.81 4.89 -4.97 -0.02 0.79 16 7 C -0.07 -0.67 4.88 -104.62 -0.51 -1.18 16 8 C -0.11 -1.02 7.93 -39.58 -0.31 -1.34 16 9 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 10 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 11 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 12 C -0.10 -0.90 9.70 -39.59 -0.38 -1.28 16 13 C 0.08 0.99 2.56 -67.62 -0.17 0.82 16 14 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 15 C -0.15 -1.46 8.89 37.16 0.33 -1.13 16 16 C 0.06 0.80 3.83 -3.76 -0.01 0.78 16 17 N -0.53 -8.21 4.81 -226.48 -1.09 -9.30 16 18 C 0.05 0.94 5.13 -3.82 -0.02 0.92 16 19 C -0.11 -2.31 4.42 -26.73 -0.12 -2.43 16 20 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 21 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 22 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 23 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 24 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 25 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.79 6.29 -51.93 -0.33 0.46 16 31 H 0.07 0.98 5.94 -51.93 -0.31 0.67 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.87 5.96 -51.93 -0.31 0.56 16 34 H 0.09 0.76 5.69 -51.94 -0.30 0.46 16 35 H 0.04 0.38 8.06 -51.93 -0.42 -0.04 16 36 H 0.12 0.95 8.01 -52.49 -0.42 0.53 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.47 6.16 -51.93 -0.32 0.15 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.67 6.34 -51.93 -0.33 0.34 16 45 H 0.09 1.38 5.99 -51.93 -0.31 1.07 16 46 H 0.04 0.64 5.96 -51.93 -0.31 0.33 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.05 1.01 6.26 -51.93 -0.33 0.69 16 50 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -30.35 391.12 -12.37 -42.72 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -9.13 Total: -1.08 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.88 Total: -21.88 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -1.23 Total: -42.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.35 -12.37 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.299 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds