Wall clock time and date at job start Tue Mar 31 2020 11:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.50816 * 2 1 4 4 C 1.53049 * 109.49237 * 120.05467 * 2 1 3 5 5 N 1.46956 * 109.37889 * 61.55371 * 4 2 1 6 6 C 1.46907 * 111.00063 * 183.19787 * 5 4 2 7 7 C 1.50710 * 109.46537 * 66.04815 * 6 5 4 8 8 C 1.38231 * 119.99800 * 269.72383 * 7 6 5 9 9 C 1.38245 * 119.99653 * 179.80839 * 8 7 6 10 10 C 1.38229 * 119.99862 * 0.42743 * 9 8 7 11 11 C 1.38245 * 120.00246 * 359.80759 * 10 9 8 12 12 C 1.38231 * 119.99832 * 90.00351 * 7 6 5 13 13 C 1.46998 * 110.85606 * 59.31765 * 5 4 2 14 14 H 1.08997 * 109.49044 * 60.65998 * 13 5 4 15 15 C 1.53007 * 109.50195 * 180.71184 * 13 5 4 16 16 C 1.53062 * 109.37366 * 300.68752 * 13 5 4 17 17 N 1.46954 * 109.35871 * 58.40489 * 16 13 5 18 18 C 1.46903 * 110.99536 * 176.81353 * 17 16 13 19 19 C 1.53001 * 109.47128 * 313.79527 * 18 17 16 20 20 C 1.52998 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.50692 * 109.47191 * 180.02562 * 20 19 18 22 22 H 1.08003 * 120.00069 * 359.97438 * 21 20 19 23 23 C 1.37885 * 120.00114 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47394 * 59.99407 * 25 23 21 27 27 H 1.48501 * 109.47228 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47044 * 299.99621 * 25 23 21 29 29 H 1.09000 * 109.46908 * 299.94574 * 1 2 3 30 30 H 1.09003 * 109.46756 * 59.94521 * 1 2 3 31 31 H 1.08997 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.49200 * 181.53522 * 4 2 1 33 33 H 1.09002 * 109.48985 * 301.57940 * 4 2 1 34 34 H 1.08989 * 109.47352 * 186.04595 * 6 5 4 35 35 H 1.09001 * 109.47106 * 306.05350 * 6 5 4 36 36 H 1.08000 * 120.00372 * 0.02562 * 8 7 6 37 37 H 1.07995 * 119.99423 * 180.20781 * 9 8 7 38 38 H 1.08002 * 119.99952 * 179.78260 * 10 9 8 39 39 H 1.07995 * 119.99979 * 179.97438 * 11 10 9 40 40 H 1.08007 * 120.00026 * 359.97438 * 12 7 6 41 41 H 1.08994 * 109.47007 * 179.90564 * 15 13 5 42 42 H 1.08995 * 109.46659 * 299.90460 * 15 13 5 43 43 H 1.08997 * 109.46825 * 59.90793 * 15 13 5 44 44 H 1.09002 * 109.48764 * 298.44108 * 16 13 5 45 45 H 1.08993 * 109.50447 * 178.38176 * 16 13 5 46 46 H 1.09000 * 109.47502 * 73.79718 * 18 17 16 47 47 H 1.09002 * 109.47049 * 193.79794 * 18 17 16 48 48 H 1.09000 * 109.47085 * 300.00446 * 19 18 17 49 49 H 1.09002 * 109.46937 * 60.00198 * 19 18 17 50 50 H 1.09001 * 109.46979 * 300.00597 * 20 19 18 51 51 H 1.09002 * 109.47124 * 60.00130 * 20 19 18 52 52 H 0.96997 * 120.00124 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 1.2488 5 7 1.5809 -2.1182 1.2269 6 6 1.9878 -2.8258 2.4483 7 6 1.2733 -2.2314 3.6347 8 6 1.8461 -1.1853 4.3335 9 6 1.1888 -0.6375 5.4194 10 6 -0.0370 -1.1417 5.8117 11 6 -0.6075 -2.1912 5.1158 12 6 0.0479 -2.7363 4.0276 13 6 2.0713 -2.8120 0.0273 14 1 3.1612 -2.8120 0.0273 15 6 1.5608 -4.2544 0.0270 16 6 1.5606 -2.0894 -1.2216 17 7 2.0204 -0.6938 -1.1991 18 6 1.6134 0.0142 -2.4203 19 6 1.9201 -0.8563 -3.6406 20 6 1.4969 -0.1187 -4.9125 21 6 1.7984 -0.9763 -6.1144 22 1 2.2474 -1.9499 -5.9842 23 6 1.5020 -0.5176 -7.3805 24 7 0.9557 0.6682 -7.5391 25 14 1.8763 -1.5803 -8.8704 26 1 1.1275 -2.8586 -8.7674 27 1 1.4655 -0.8645 -10.1049 28 1 3.3332 -1.8630 -8.9232 29 1 -0.3633 0.5130 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1304 -0.6988 1.2627 33 1 1.6548 -0.2265 2.1394 34 1 1.7297 -3.8810 2.3600 35 1 3.0646 -2.7252 2.5849 36 1 2.8054 -0.7935 4.0291 37 1 1.6348 0.1821 5.9632 38 1 -0.5488 -0.7161 6.6621 39 1 -1.5650 -2.5854 5.4226 40 1 -0.3976 -3.5564 3.4841 41 1 1.9233 -4.7679 -0.8635 42 1 1.9247 -4.7687 0.9164 43 1 0.4708 -4.2540 0.0278 44 1 0.4709 -2.1131 -1.2354 45 1 1.9465 -2.5851 -2.1122 46 1 0.5440 0.2211 -2.3811 47 1 2.1625 0.9527 -2.4962 48 1 2.9896 -1.0632 -3.6798 49 1 1.3710 -1.7948 -3.5647 50 1 0.4275 0.0886 -4.8735 51 1 2.0463 0.8197 -4.9883 52 1 0.7475 0.9911 -8.4298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347586652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:34 Heat of formation + Delta-G solvation = 12.226665 kcal Electronic energy + Delta-G solvation = -27002.923906 eV Core-core repulsion = 23580.086131 eV Total energy + Delta-G solvation = -3422.837776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24333 -39.89696 -37.49498 -35.69037 -34.19006 -33.63751 -31.99755 -31.68425 -30.14343 -28.71955 -27.43920 -26.86109 -25.30528 -24.17587 -23.34289 -22.37625 -21.88084 -21.37765 -19.65443 -18.49959 -17.68396 -17.35097 -16.79920 -16.48597 -16.43678 -16.03526 -15.88273 -15.70499 -15.28007 -15.16862 -14.71283 -14.30714 -14.25534 -14.14605 -13.86090 -13.70648 -13.42918 -13.38330 -13.13264 -12.93499 -12.85052 -12.63716 -12.50994 -12.44763 -12.41716 -12.34796 -12.04733 -11.83966 -11.72447 -11.62926 -11.44772 -11.33456 -11.24878 -11.00118 -10.54658 -9.74162 -9.63965 -9.30236 -9.10476 -8.20000 -6.31174 0.48145 0.57456 1.39451 1.42851 1.50721 2.40705 2.74344 2.94774 3.12862 3.19517 3.80599 3.82443 3.92247 4.01374 4.10850 4.16865 4.22179 4.26633 4.33508 4.37307 4.40095 4.45170 4.46633 4.58766 4.63447 4.68774 4.71106 4.73073 4.78963 4.80538 4.85975 4.88767 4.95775 5.01382 5.10070 5.11448 5.16883 5.18174 5.22825 5.24061 5.36699 5.42961 5.50689 5.62663 5.69087 5.73287 5.76312 5.84594 6.00194 6.07031 6.17314 6.21999 6.24611 6.29651 6.85261 7.37809 8.91793 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.002415 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.681728 B =11593.477874 C =12044.137492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 H 0.083 0.917 4 C 0.072 3.928 5 N -0.527 5.527 6 C 0.090 3.910 7 C -0.083 4.083 8 C -0.125 4.125 9 C -0.129 4.129 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.111 4.111 13 C 0.090 3.910 14 H 0.042 0.958 15 C -0.142 4.142 16 C 0.056 3.944 17 N -0.537 5.537 18 C 0.065 3.935 19 C -0.092 4.092 20 C 0.028 3.972 21 C -0.542 4.542 22 H 0.059 0.941 23 C -0.002 4.002 24 N -0.934 5.934 25 Si 0.966 3.034 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.267 1.267 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.123 0.877 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.030 0.970 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.054 0.946 50 H -0.012 1.012 51 H -0.010 1.010 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -7.141 28.737 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.030 4.030 3 H 0.101 0.899 4 C -0.057 4.057 5 N -0.252 5.252 6 C -0.036 4.036 7 C -0.084 4.084 8 C -0.143 4.143 9 C -0.147 4.147 10 C -0.148 4.148 11 C -0.148 4.148 12 C -0.129 4.129 13 C -0.018 4.018 14 H 0.060 0.940 15 C -0.200 4.200 16 C -0.072 4.072 17 N -0.261 5.261 18 C -0.063 4.063 19 C -0.130 4.130 20 C -0.010 4.010 21 C -0.580 4.580 22 H 0.078 0.922 23 C -0.200 4.200 24 N -0.574 5.574 25 Si 0.790 3.210 26 H -0.191 1.191 27 H -0.208 1.208 28 H -0.191 1.191 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.072 0.928 50 H 0.007 0.993 51 H 0.009 0.991 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.033 -7.028 28.595 29.446 hybrid contribution 0.002 0.109 -1.236 1.241 sum -0.031 -6.919 27.359 28.220 Atomic orbital electron populations 1.22195 0.96848 1.02311 1.01126 1.21811 0.93666 0.97793 0.89723 0.89890 1.22120 0.97415 0.89025 0.97102 1.62184 1.59864 1.01870 1.01321 1.21152 0.96746 0.98884 0.86833 1.19811 0.95668 0.96793 0.96101 1.21233 1.00440 0.96438 0.96202 1.21377 0.95721 1.00413 0.97160 1.21437 0.95968 0.96908 1.00482 1.21415 1.00539 0.96995 0.95841 1.21182 0.94473 1.00426 0.96839 1.21621 0.97077 0.94285 0.88853 0.94049 1.21861 1.01915 0.93463 1.02747 1.22290 0.98067 0.88844 0.97965 1.62482 1.59244 1.02539 1.01841 1.22054 0.97981 0.97262 0.88972 1.21503 1.00220 0.98092 0.93202 1.18947 0.94452 0.94885 0.92722 1.21643 1.40670 1.03247 0.92427 0.92232 1.26008 0.94904 0.96474 1.02588 1.70094 1.43978 1.19795 1.23532 0.85496 0.79054 0.78725 0.77755 1.19089 1.20810 1.19139 0.91597 0.94199 0.92019 0.94634 0.89277 0.88448 0.93924 0.85889 0.84653 0.84527 0.84708 0.85617 0.91618 0.90695 0.92078 0.94653 0.90615 0.95216 0.91732 0.93031 0.92788 0.99326 0.99142 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 8.39 71.98 0.60 -3.72 16 2 C 0.08 2.04 2.97 44.92 0.13 2.17 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.07 1.56 4.69 86.31 0.40 1.97 16 5 N -0.53 -10.94 3.84 -874.87 -3.36 -14.30 16 6 C 0.09 1.54 4.89 85.56 0.42 1.96 16 7 C -0.08 -1.43 4.88 -19.86 -0.10 -1.53 16 8 C -0.12 -2.01 7.93 22.27 0.18 -1.83 16 9 C -0.13 -1.87 10.05 22.27 0.22 -1.64 16 10 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 11 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 12 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 13 C 0.09 2.04 2.56 44.92 0.12 2.15 16 14 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 15 C -0.14 -2.59 8.89 71.98 0.64 -1.95 16 16 C 0.06 1.61 3.83 86.31 0.33 1.94 16 17 N -0.54 -16.44 4.81 -870.46 -4.19 -20.63 16 18 C 0.06 2.36 5.13 86.30 0.44 2.81 16 19 C -0.09 -3.96 4.42 30.59 0.14 -3.82 16 20 C 0.03 1.50 4.97 29.85 0.15 1.65 16 21 C -0.54 -31.55 9.11 25.60 0.23 -31.32 16 22 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 23 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 24 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 25 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.04 1.14 6.29 -2.39 -0.01 1.13 16 31 H 0.06 1.70 5.94 -2.39 -0.01 1.69 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.80 5.96 -2.39 -0.01 1.79 16 34 H 0.10 1.46 5.69 -2.39 -0.01 1.45 16 35 H 0.04 0.72 8.06 -2.39 -0.02 0.70 16 36 H 0.12 1.78 8.01 -2.91 -0.02 1.75 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.09 6.16 -2.39 -0.01 1.07 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 1.07 6.34 -2.39 -0.02 1.06 16 45 H 0.08 2.35 5.99 -2.39 -0.01 2.33 16 46 H 0.03 1.12 5.96 -2.39 -0.01 1.10 16 47 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.05 2.25 6.26 -2.39 -0.01 2.23 16 50 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 51 H -0.01 -0.58 8.14 -2.39 -0.02 -0.59 16 52 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -65.31 391.12 0.67 -64.65 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.87 Total: 16.69 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 5.03 Total: -35.72 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -7.26 Total: -92.54 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.31 0.67 -64.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.872 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds