Wall clock time and date at job start Tue Mar 31 2020 11:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48490 * 2 1 4 4 C 1.53042 * 109.48964 * 239.93327 * 2 1 3 5 5 N 1.46956 * 109.36474 * 181.63186 * 4 2 1 6 6 C 1.46902 * 110.99900 * 183.19084 * 5 4 2 7 7 C 1.50693 * 109.47246 * 293.94877 * 6 5 4 8 8 C 1.38233 * 120.00616 * 269.73242 * 7 6 5 9 9 C 1.38236 * 120.00424 * 179.76238 * 8 7 6 10 10 C 1.38229 * 119.99635 * 0.48465 * 9 8 7 11 11 C 1.38230 * 120.00214 * 359.79069 * 10 9 8 12 12 C 1.38231 * 120.00224 * 359.95743 * 11 10 9 13 13 C 1.46992 * 110.89694 * 59.32025 * 5 4 2 14 14 H 1.09001 * 109.48186 * 60.64012 * 13 5 4 15 15 C 1.52999 * 109.52383 * 180.72380 * 13 5 4 16 16 C 1.53056 * 109.33916 * 300.69699 * 13 5 4 17 17 N 1.46954 * 109.48914 * 120.03839 * 2 1 3 18 18 C 1.46897 * 111.00197 * 303.15985 * 17 2 1 19 19 C 1.52995 * 109.47214 * 302.24470 * 18 17 2 20 20 C 1.52996 * 109.47516 * 180.02562 * 19 18 17 21 21 C 1.50692 * 109.47300 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00685 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00191 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00650 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99736 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47041 * 90.00082 * 25 23 21 27 27 H 1.48501 * 109.46992 * 210.00363 * 25 23 21 28 28 H 1.48501 * 109.46877 * 329.99868 * 25 23 21 29 29 H 1.08999 * 109.47344 * 299.95790 * 1 2 3 30 30 H 1.09000 * 109.47374 * 59.95896 * 1 2 3 31 31 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.49013 * 301.59889 * 4 2 1 33 33 H 1.09003 * 109.49258 * 61.66403 * 4 2 1 34 34 H 1.08994 * 109.47402 * 53.95448 * 6 5 4 35 35 H 1.09007 * 109.46938 * 173.95446 * 6 5 4 36 36 H 1.08005 * 119.99620 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00306 * 180.25151 * 9 8 7 38 38 H 1.08004 * 119.99853 * 179.76453 * 10 9 8 39 39 H 1.08005 * 119.99955 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00266 * 180.02562 * 12 11 10 41 41 H 1.09007 * 109.46860 * 179.87861 * 15 13 5 42 42 H 1.08996 * 109.47159 * 299.87833 * 15 13 5 43 43 H 1.09003 * 109.46726 * 59.87980 * 15 13 5 44 44 H 1.09002 * 109.48813 * 298.40763 * 16 13 5 45 45 H 1.09002 * 109.48870 * 178.36652 * 16 13 5 46 46 H 1.08994 * 109.47217 * 62.24642 * 18 17 2 47 47 H 1.09004 * 109.47164 * 182.24353 * 18 17 2 48 48 H 1.09007 * 109.46870 * 299.99983 * 19 18 17 49 49 H 1.08994 * 109.47313 * 59.99885 * 19 18 17 50 50 H 1.09002 * 109.47100 * 300.00039 * 20 19 18 51 51 H 1.09004 * 109.47300 * 59.99614 * 20 19 18 52 52 H 0.96997 * 120.00076 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7228 -1.2486 5 7 3.5096 -0.7555 -1.2262 6 6 4.0411 -1.3756 -2.4473 7 6 3.6507 -2.8307 -2.4826 8 6 4.4809 -3.7829 -1.9213 9 6 4.1204 -5.1171 -1.9493 10 6 2.9346 -5.5002 -2.5475 11 6 2.1072 -4.5487 -3.1138 12 6 2.4651 -3.2139 -3.0812 13 6 4.0004 -1.4491 -0.0268 14 1 3.6364 -2.4766 -0.0265 15 6 5.5304 -1.4491 -0.0262 16 6 3.4893 -0.7261 1.2217 17 7 2.0203 -0.6935 1.1993 18 6 1.4888 -0.0733 2.4203 19 6 1.8851 1.4040 2.4561 20 6 1.3321 2.0498 3.7281 21 6 1.7231 3.5046 3.7636 22 1 2.3079 3.9266 2.9596 23 6 1.3342 4.2974 4.8226 24 7 1.6749 5.5673 4.8534 25 14 0.3221 3.5680 6.2129 26 1 1.2305 3.0413 7.2630 27 1 -0.5501 4.6196 6.7948 28 1 -0.5188 2.4631 5.6862 29 1 -0.3634 0.5132 0.8903 30 1 -0.3634 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6544 -1.7420 -1.2623 33 1 1.7022 -0.1934 -2.1393 34 1 3.6312 -0.8682 -3.3205 35 1 5.1278 -1.2907 -2.4545 36 1 5.4095 -3.4840 -1.4578 37 1 4.7670 -5.8606 -1.5072 38 1 2.6548 -6.5431 -2.5728 39 1 1.1809 -4.8481 -3.5816 40 1 1.8184 -2.4705 -3.5233 41 1 5.8934 -1.9618 0.8647 42 1 5.8941 -1.9641 -0.9153 43 1 5.8937 -0.4214 -0.0274 44 1 3.8755 0.2931 1.2353 45 1 3.8278 -1.2553 2.1125 46 1 0.4022 -0.1583 2.4275 47 1 1.8987 -0.5808 3.2936 48 1 2.9719 1.4888 2.4488 49 1 1.4753 1.9114 1.5829 50 1 0.2455 1.9648 3.7358 51 1 1.7424 1.5422 4.6012 52 1 1.4010 6.1249 5.5982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347586653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:37 Heat of formation + Delta-G solvation = 30.113450 kcal Electronic energy + Delta-G solvation = -27526.984417 eV Core-core repulsion = 24104.922270 eV Total energy + Delta-G solvation = -3422.062146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53166 -38.95588 -36.53533 -33.68790 -33.22139 -32.05603 -31.15269 -30.85030 -29.56778 -27.84245 -26.09613 -24.91933 -24.08892 -22.96706 -22.33263 -21.82801 -20.71662 -20.01265 -18.74915 -16.98335 -16.66301 -16.22475 -15.93069 -15.46932 -15.23826 -15.07561 -14.89474 -14.30234 -14.10598 -13.86710 -13.72835 -13.51376 -12.95313 -12.75814 -12.71567 -12.57408 -12.44363 -12.14224 -11.95850 -11.83512 -11.74991 -11.57652 -11.42489 -11.27450 -11.18702 -11.07807 -10.92886 -10.65553 -10.58320 -10.25251 -9.86326 -9.77177 -9.60584 -9.19445 -9.11508 -8.97032 -8.51579 -8.38508 -7.84374 -6.02016 -3.99711 1.10426 1.17382 3.31937 3.39180 3.43206 3.51221 3.89399 4.13512 4.47090 4.56137 4.57922 4.76036 4.79931 4.90881 4.93264 5.00042 5.20751 5.26382 5.31783 5.32743 5.35318 5.40294 5.49060 5.55937 5.60424 5.66190 5.68435 5.77148 5.78351 5.79710 5.82965 5.88136 5.90056 6.01243 6.05724 6.14981 6.20204 6.24980 6.28595 6.30245 6.35947 6.40070 6.53845 6.67694 6.77255 6.92151 6.96886 7.01645 7.32660 7.34830 7.41916 7.48263 7.82309 8.57283 9.03281 9.60743 11.11606 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.002794 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.977900 B =10019.316208 C =10246.957522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.059 0.941 4 C 0.061 3.939 5 N -0.522 5.522 6 C 0.088 3.912 7 C -0.116 4.116 8 C -0.112 4.112 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.081 3.919 14 H 0.054 0.946 15 C -0.152 4.152 16 C 0.059 3.941 17 N -0.535 5.535 18 C 0.048 3.952 19 C -0.136 4.136 20 C -0.010 4.010 21 C -0.518 4.518 22 H 0.069 0.931 23 C 0.065 3.935 24 N -0.905 5.905 25 Si 0.880 3.120 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.265 1.265 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.014 0.986 51 H 0.009 0.991 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -21.889 -16.908 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 H 0.076 0.924 4 C -0.067 4.067 5 N -0.245 5.245 6 C -0.039 4.039 7 C -0.118 4.118 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.141 4.141 11 C -0.139 4.139 12 C -0.127 4.127 13 C -0.027 4.027 14 H 0.072 0.928 15 C -0.210 4.210 16 C -0.070 4.070 17 N -0.259 5.259 18 C -0.079 4.079 19 C -0.174 4.174 20 C -0.048 4.048 21 C -0.556 4.556 22 H 0.088 0.912 23 C -0.136 4.136 24 N -0.544 5.544 25 Si 0.708 3.292 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.190 1.190 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.032 0.968 51 H 0.028 0.972 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.822 -21.699 -16.793 27.703 hybrid contribution -0.553 -0.246 0.876 1.065 sum 3.269 -21.945 -15.916 27.306 Atomic orbital electron populations 1.21846 0.94272 1.01973 1.02307 1.21643 0.95101 0.96868 0.89382 0.92356 1.22263 0.86876 0.99782 0.97796 1.62571 1.08898 1.51606 1.01382 1.21304 1.01140 0.87859 0.93630 1.20689 0.95342 0.97345 0.98418 1.21266 0.99760 0.92825 0.99225 1.21151 0.97036 0.96114 0.99661 1.21140 0.94927 0.99394 0.98590 1.21138 0.99594 0.93236 0.99939 1.21078 0.96322 0.96030 0.99250 1.21708 0.94754 0.96579 0.89653 0.92819 1.22002 0.94514 1.02843 1.01611 1.22174 0.88177 1.00026 0.96605 1.62475 1.07788 1.53167 1.02463 1.22366 1.00228 0.94244 0.91050 1.22043 1.00633 0.94320 1.00453 1.19489 0.95894 0.96484 0.92892 1.21163 1.34197 0.92719 1.07565 0.91245 1.25052 0.95737 0.94714 0.98100 1.69922 1.46796 1.05773 1.31944 0.86767 0.80770 0.79087 0.82590 1.20350 1.21451 1.18987 0.91467 0.92470 0.92401 0.93591 0.90812 0.90036 0.89546 0.85718 0.86248 0.86351 0.86259 0.86286 0.92057 0.92230 0.91545 0.93191 0.90703 0.90805 0.91398 0.92850 0.92534 0.96759 0.97230 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.86 37.16 0.33 -1.56 16 2 C 0.08 1.11 2.01 -67.66 -0.14 0.97 16 3 H 0.06 0.96 6.45 -51.93 -0.33 0.62 16 4 C 0.06 0.73 4.35 -3.77 -0.02 0.71 16 5 N -0.52 -6.09 4.73 -227.90 -1.08 -7.17 16 6 C 0.09 0.84 5.17 -4.98 -0.03 0.81 16 7 C -0.12 -1.11 4.01 -104.63 -0.42 -1.53 16 8 C -0.11 -1.03 7.84 -39.58 -0.31 -1.34 16 9 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 10 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 11 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 12 C -0.11 -1.01 8.05 -39.58 -0.32 -1.32 16 13 C 0.08 0.96 1.94 -67.63 -0.13 0.83 16 14 H 0.05 0.69 6.29 -51.93 -0.33 0.36 16 15 C -0.15 -1.49 8.38 37.16 0.31 -1.18 16 16 C 0.06 0.82 4.55 -3.76 -0.02 0.81 16 17 N -0.54 -7.94 4.73 -226.50 -1.07 -9.01 16 18 C 0.05 0.80 4.83 -3.83 -0.02 0.79 16 19 C -0.14 -2.72 4.44 -26.74 -0.12 -2.84 16 20 C -0.01 -0.23 4.04 -27.89 -0.11 -0.34 16 21 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 22 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 23 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 24 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 25 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 29 H 0.07 0.97 6.40 -51.93 -0.33 0.63 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.57 6.38 -51.93 -0.33 0.24 16 33 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 35 H 0.09 0.76 6.33 -51.93 -0.33 0.43 16 36 H 0.13 1.02 5.41 -52.48 -0.28 0.74 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 39 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.12 0.98 8.03 -52.49 -0.42 0.56 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.50 4.08 -51.93 -0.21 0.29 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.80 6.63 -51.93 -0.34 0.45 16 45 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 46 H 0.07 1.21 6.38 -51.93 -0.33 0.88 16 47 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 48 H 0.05 1.11 6.62 -51.93 -0.34 0.76 16 49 H 0.06 1.16 6.44 -51.93 -0.33 0.83 16 50 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 51 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 52 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -31.41 380.99 -11.83 -43.24 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.92 Total: 0.58 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -2.61 Total: -23.16 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -1.38 Total: -43.81 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.41 -11.83 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.351 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds