Wall clock time and date at job start Tue Mar 31 2020 11:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.48490 * 2 1 4 4 C 1.53042 * 109.48964 * 239.93327 * 2 1 3 5 5 N 1.46956 * 109.36474 * 181.63186 * 4 2 1 6 6 C 1.46902 * 110.99900 * 183.19084 * 5 4 2 7 7 C 1.50693 * 109.47246 * 293.94877 * 6 5 4 8 8 C 1.38233 * 120.00616 * 269.73242 * 7 6 5 9 9 C 1.38236 * 120.00424 * 179.76238 * 8 7 6 10 10 C 1.38229 * 119.99635 * 0.48465 * 9 8 7 11 11 C 1.38230 * 120.00214 * 359.79069 * 10 9 8 12 12 C 1.38231 * 120.00224 * 359.95743 * 11 10 9 13 13 C 1.46992 * 110.89694 * 59.32025 * 5 4 2 14 14 H 1.09001 * 109.48186 * 60.64012 * 13 5 4 15 15 C 1.52999 * 109.52383 * 180.72380 * 13 5 4 16 16 C 1.53056 * 109.33916 * 300.69699 * 13 5 4 17 17 N 1.46954 * 109.48914 * 120.03839 * 2 1 3 18 18 C 1.46897 * 111.00197 * 303.15985 * 17 2 1 19 19 C 1.52995 * 109.47214 * 302.24470 * 18 17 2 20 20 C 1.52996 * 109.47516 * 180.02562 * 19 18 17 21 21 C 1.50692 * 109.47300 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00685 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00191 * 179.97438 * 21 20 19 24 24 N 1.31515 * 120.00650 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 119.99736 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47041 * 90.00082 * 25 23 21 27 27 H 1.48501 * 109.46992 * 210.00363 * 25 23 21 28 28 H 1.48501 * 109.46877 * 329.99868 * 25 23 21 29 29 H 1.08999 * 109.47344 * 299.95790 * 1 2 3 30 30 H 1.09000 * 109.47374 * 59.95896 * 1 2 3 31 31 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.49013 * 301.59889 * 4 2 1 33 33 H 1.09003 * 109.49258 * 61.66403 * 4 2 1 34 34 H 1.08994 * 109.47402 * 53.95448 * 6 5 4 35 35 H 1.09007 * 109.46938 * 173.95446 * 6 5 4 36 36 H 1.08005 * 119.99620 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00306 * 180.25151 * 9 8 7 38 38 H 1.08004 * 119.99853 * 179.76453 * 10 9 8 39 39 H 1.08005 * 119.99955 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00266 * 180.02562 * 12 11 10 41 41 H 1.09007 * 109.46860 * 179.87861 * 15 13 5 42 42 H 1.08996 * 109.47159 * 299.87833 * 15 13 5 43 43 H 1.09003 * 109.46726 * 59.87980 * 15 13 5 44 44 H 1.09002 * 109.48813 * 298.40763 * 16 13 5 45 45 H 1.09002 * 109.48870 * 178.36652 * 16 13 5 46 46 H 1.08994 * 109.47217 * 62.24642 * 18 17 2 47 47 H 1.09004 * 109.47164 * 182.24353 * 18 17 2 48 48 H 1.09007 * 109.46870 * 299.99983 * 19 18 17 49 49 H 1.08994 * 109.47313 * 59.99885 * 19 18 17 50 50 H 1.09002 * 109.47100 * 300.00039 * 20 19 18 51 51 H 1.09004 * 109.47300 * 59.99614 * 20 19 18 52 52 H 0.96997 * 120.00076 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7228 -1.2486 5 7 3.5096 -0.7555 -1.2262 6 6 4.0411 -1.3756 -2.4473 7 6 3.6507 -2.8307 -2.4826 8 6 4.4809 -3.7829 -1.9213 9 6 4.1204 -5.1171 -1.9493 10 6 2.9346 -5.5002 -2.5475 11 6 2.1072 -4.5487 -3.1138 12 6 2.4651 -3.2139 -3.0812 13 6 4.0004 -1.4491 -0.0268 14 1 3.6364 -2.4766 -0.0265 15 6 5.5304 -1.4491 -0.0262 16 6 3.4893 -0.7261 1.2217 17 7 2.0203 -0.6935 1.1993 18 6 1.4888 -0.0733 2.4203 19 6 1.8851 1.4040 2.4561 20 6 1.3321 2.0498 3.7281 21 6 1.7231 3.5046 3.7636 22 1 2.3079 3.9266 2.9596 23 6 1.3342 4.2974 4.8226 24 7 1.6749 5.5673 4.8534 25 14 0.3221 3.5680 6.2129 26 1 1.2305 3.0413 7.2630 27 1 -0.5501 4.6196 6.7948 28 1 -0.5188 2.4631 5.6862 29 1 -0.3634 0.5132 0.8903 30 1 -0.3634 0.5145 -0.8896 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6544 -1.7420 -1.2623 33 1 1.7022 -0.1934 -2.1393 34 1 3.6312 -0.8682 -3.3205 35 1 5.1278 -1.2907 -2.4545 36 1 5.4095 -3.4840 -1.4578 37 1 4.7670 -5.8606 -1.5072 38 1 2.6548 -6.5431 -2.5728 39 1 1.1809 -4.8481 -3.5816 40 1 1.8184 -2.4705 -3.5233 41 1 5.8934 -1.9618 0.8647 42 1 5.8941 -1.9641 -0.9153 43 1 5.8937 -0.4214 -0.0274 44 1 3.8755 0.2931 1.2353 45 1 3.8278 -1.2553 2.1125 46 1 0.4022 -0.1583 2.4275 47 1 1.8987 -0.5808 3.2936 48 1 2.9719 1.4888 2.4488 49 1 1.4753 1.9114 1.5829 50 1 0.2455 1.9648 3.7358 51 1 1.7424 1.5422 4.6012 52 1 1.4010 6.1249 5.5982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347586653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:36 Heat of formation + Delta-G solvation = 10.944714 kcal Electronic energy + Delta-G solvation = -27527.815635 eV Core-core repulsion = 24104.922270 eV Total energy + Delta-G solvation = -3422.893365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42501 -39.84851 -37.60310 -35.53057 -34.26500 -33.64577 -32.09735 -31.80978 -30.55049 -29.15758 -27.40776 -26.00984 -25.20587 -24.04722 -23.27481 -22.64112 -22.46817 -20.98884 -19.96118 -18.87441 -17.63898 -17.23635 -16.98361 -16.43410 -16.27967 -16.10799 -15.90716 -15.80740 -15.35245 -15.23202 -14.71407 -14.64893 -14.37052 -14.00624 -13.71680 -13.56584 -13.51098 -13.27841 -13.09293 -12.92618 -12.84528 -12.73560 -12.69899 -12.53847 -12.33657 -12.16765 -11.92257 -11.85063 -11.78061 -11.74260 -11.57963 -11.40655 -11.28936 -11.13157 -10.77870 -9.76522 -9.65184 -9.30626 -9.13106 -8.31215 -6.35967 0.44889 0.52907 1.34667 1.36852 1.49333 2.34995 2.80344 2.95611 3.03891 3.07477 3.77444 3.85723 3.94174 3.95675 4.09749 4.15899 4.23786 4.26099 4.29325 4.32964 4.35054 4.39310 4.46306 4.59396 4.63956 4.69340 4.70957 4.76015 4.79910 4.80870 4.82989 4.89538 4.93196 4.97856 5.02708 5.06064 5.09647 5.16851 5.18414 5.24214 5.30256 5.39294 5.52279 5.54029 5.59273 5.64421 5.65496 5.68057 6.00421 6.06707 6.14722 6.21210 6.23375 6.29100 6.71787 7.28720 8.85949 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.002794 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.977900 B =10019.316208 C =10246.957522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.076 3.924 3 H 0.028 0.972 4 C 0.070 3.930 5 N -0.535 5.535 6 C 0.091 3.909 7 C -0.125 4.125 8 C -0.122 4.122 9 C -0.131 4.131 10 C -0.129 4.129 11 C -0.130 4.130 12 C -0.119 4.119 13 C 0.091 3.909 14 H 0.050 0.950 15 C -0.147 4.147 16 C 0.056 3.944 17 N -0.529 5.529 18 C 0.059 3.941 19 C -0.121 4.121 20 C -0.005 4.005 21 C -0.534 4.534 22 H 0.023 0.977 23 C 0.001 3.999 24 N -0.953 5.953 25 Si 0.955 3.045 26 H -0.266 1.266 27 H -0.283 1.283 28 H -0.244 1.244 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.024 0.976 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.043 0.957 50 H 0.021 0.979 51 H 0.018 0.982 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.016 -24.793 -16.932 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.032 4.032 3 H 0.046 0.954 4 C -0.058 4.058 5 N -0.258 5.258 6 C -0.036 4.036 7 C -0.127 4.127 8 C -0.140 4.140 9 C -0.149 4.149 10 C -0.148 4.148 11 C -0.148 4.148 12 C -0.138 4.138 13 C -0.018 4.018 14 H 0.068 0.932 15 C -0.205 4.205 16 C -0.072 4.072 17 N -0.252 5.252 18 C -0.069 4.069 19 C -0.160 4.160 20 C -0.043 4.043 21 C -0.572 4.572 22 H 0.041 0.959 23 C -0.195 4.195 24 N -0.594 5.594 25 Si 0.778 3.222 26 H -0.191 1.191 27 H -0.209 1.209 28 H -0.167 1.167 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.057 0.943 49 H 0.062 0.938 50 H 0.040 0.960 51 H 0.037 0.963 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.008 -24.622 -16.844 29.984 hybrid contribution -0.224 0.716 0.786 1.086 sum 2.784 -23.906 -16.058 28.933 Atomic orbital electron populations 1.21803 0.93260 1.02560 1.02251 1.21701 0.95982 0.95448 0.90092 0.95370 1.22158 0.87241 0.99478 0.96951 1.62566 1.08705 1.52337 1.02213 1.21312 1.01460 0.88085 0.92710 1.20697 0.95765 0.97180 0.99072 1.21429 1.00091 0.93154 0.99349 1.21429 0.97456 0.96357 0.99611 1.21445 0.94799 1.00406 0.98114 1.21406 1.00329 0.93139 0.99945 1.21252 0.96449 0.96628 0.99460 1.21598 0.95837 0.95677 0.88669 0.93222 1.21975 0.93031 1.02507 1.02966 1.22250 0.87660 0.98968 0.98351 1.62557 1.08278 1.52328 1.02046 1.22229 1.00803 0.91457 0.92376 1.21861 0.99347 0.96744 0.98053 1.19430 0.96306 0.93523 0.95061 1.21502 1.33731 0.95524 1.06447 0.95852 1.26097 0.97104 0.94997 1.01313 1.70083 1.48449 1.07599 1.33287 0.85585 0.79196 0.78822 0.78603 1.19059 1.20904 1.16699 0.93116 0.90996 0.91350 0.93540 0.89654 0.89361 0.88877 0.85021 0.84634 0.84569 0.84737 0.85663 0.91105 0.90522 0.92676 0.95733 0.90177 0.90013 0.90651 0.94348 0.93798 0.96047 0.96327 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.86 71.98 0.64 -2.86 16 2 C 0.08 2.12 2.01 44.92 0.09 2.21 16 3 H 0.03 0.96 6.45 -2.39 -0.02 0.94 16 4 C 0.07 1.60 4.35 86.31 0.38 1.98 16 5 N -0.54 -12.04 4.73 -874.94 -4.14 -16.18 16 6 C 0.09 1.61 5.17 85.55 0.44 2.05 16 7 C -0.13 -2.19 4.01 -19.87 -0.08 -2.27 16 8 C -0.12 -2.02 7.84 22.27 0.17 -1.84 16 9 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 10 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 11 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 12 C -0.12 -2.01 8.05 22.27 0.18 -1.83 16 13 C 0.09 2.05 1.94 44.92 0.09 2.14 16 14 H 0.05 1.20 6.29 -2.39 -0.02 1.18 16 15 C -0.15 -2.71 8.38 71.98 0.60 -2.11 16 16 C 0.06 1.57 4.55 86.31 0.39 1.96 16 17 N -0.53 -15.35 4.73 -870.51 -4.12 -19.47 16 18 C 0.06 1.92 4.83 86.30 0.42 2.33 16 19 C -0.12 -4.95 4.44 30.59 0.14 -4.81 16 20 C -0.01 -0.25 4.04 29.84 0.12 -0.13 16 21 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 22 H 0.02 1.56 7.99 -2.91 -0.02 1.53 16 23 C 0.00 0.08 5.47 84.66 0.46 0.54 16 24 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 25 Si 0.96 45.10 27.47 68.60 1.88 46.98 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 29 H 0.05 1.42 6.40 -2.39 -0.02 1.40 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.08 6.38 -2.39 -0.02 1.06 16 33 H 0.09 1.74 8.11 -2.39 -0.02 1.72 16 34 H 0.09 1.42 8.04 -2.39 -0.02 1.40 16 35 H 0.09 1.50 6.33 -2.38 -0.02 1.48 16 36 H 0.13 1.89 5.41 -2.91 -0.02 1.87 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.13 1.86 8.03 -2.91 -0.02 1.84 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.14 4.08 -2.39 -0.01 1.13 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.02 0.81 6.63 -2.39 -0.02 0.79 16 45 H 0.08 2.11 8.11 -2.39 -0.02 2.10 16 46 H 0.08 2.54 6.38 -2.39 -0.02 2.53 16 47 H 0.08 2.34 8.10 -2.38 -0.02 2.32 16 48 H 0.04 1.66 6.62 -2.38 -0.02 1.64 16 49 H 0.04 1.88 6.44 -2.39 -0.02 1.87 16 50 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 51 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 52 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -69.22 380.99 -0.30 -69.52 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.82 Total: 20.04 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 4.96 Total: -39.74 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -7.96 Total: -96.80 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -69.22 -0.30 -69.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347586653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.462 kcal (2) G-P(sol) polarization free energy of solvation -69.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds