Wall clock time and date at job start Tue Mar 31 2020 11:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00143 * 2 1 4 4 C 1.50700 * 109.46992 * 293.95849 * 3 2 1 5 5 C 1.38237 * 119.99606 * 269.72011 * 4 3 2 6 6 C 1.38237 * 119.99714 * 179.76415 * 5 4 3 7 7 C 1.38234 * 119.99978 * 0.51404 * 6 5 4 8 8 C 1.38234 * 119.99937 * 359.74495 * 7 6 5 9 9 C 1.38232 * 120.00225 * 359.97438 * 8 7 6 10 10 C 1.46896 * 111.00280 * 123.95274 * 2 1 3 11 11 C 1.53004 * 109.46921 * 85.87440 * 10 2 1 12 12 C 1.53000 * 109.46810 * 57.79245 * 11 10 2 13 13 C 1.52999 * 109.47497 * 297.79367 * 11 10 2 14 14 C 1.52999 * 109.47132 * 177.79025 * 11 10 2 15 15 N 1.46497 * 109.47186 * 180.02562 * 14 11 10 16 16 C 1.36940 * 119.99499 * 270.00015 * 15 14 11 17 17 H 1.08008 * 119.99762 * 142.29999 * 16 15 14 18 18 C 1.38815 * 120.00248 * 322.29475 * 16 15 14 19 19 N 1.31619 * 119.99594 * 337.86950 * 18 16 15 20 20 Si 1.86792 * 120.00089 * 157.87079 * 18 16 15 21 21 H 1.48500 * 109.47098 * 60.00154 * 20 18 16 22 22 H 1.48496 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47429 * 300.00502 * 20 18 16 24 24 C 1.46499 * 120.00588 * 89.99642 * 15 14 11 25 25 C 1.52999 * 117.50011 * 184.04220 * 24 15 14 26 26 C 1.52998 * 117.49803 * 115.41921 * 24 15 14 27 27 H 1.08998 * 109.46765 * 300.02382 * 1 2 3 28 28 H 1.08998 * 109.47263 * 60.01979 * 1 2 3 29 29 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46544 * 53.95476 * 3 2 1 31 31 H 1.08999 * 109.47199 * 173.95489 * 3 2 1 32 32 H 1.07998 * 120.00396 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.99812 * 180.23027 * 6 5 4 34 34 H 1.08002 * 119.99737 * 179.72261 * 7 6 5 35 35 H 1.08003 * 119.99717 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00244 * 179.97438 * 9 8 7 37 37 H 1.09008 * 109.47085 * 325.88241 * 10 2 1 38 38 H 1.08993 * 109.47678 * 205.87548 * 10 2 1 39 39 H 1.09005 * 109.47143 * 179.97438 * 12 11 10 40 40 H 1.09004 * 109.47415 * 300.00264 * 12 11 10 41 41 H 1.09003 * 109.47657 * 59.99833 * 12 11 10 42 42 H 1.09004 * 109.46631 * 311.30875 * 13 11 10 43 43 H 1.09001 * 109.47305 * 71.30790 * 13 11 10 44 44 H 1.08998 * 109.46959 * 191.31204 * 13 11 10 45 45 H 1.08995 * 109.47182 * 60.00435 * 14 11 10 46 46 H 1.09002 * 109.47306 * 300.00237 * 14 11 10 47 47 H 0.96999 * 119.99897 * 185.02718 * 19 18 16 48 48 H 1.09001 * 115.54650 * 329.75171 * 24 15 14 49 49 H 1.09000 * 117.50015 * 359.97438 * 25 24 15 50 50 H 1.09002 * 117.49874 * 145.02314 * 25 24 15 51 51 H 1.09005 * 117.50270 * 214.98498 * 26 24 15 52 52 H 1.09005 * 117.50083 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4965 1.9698 -2.3782 6 6 2.1653 2.5855 -3.5708 7 6 0.9795 3.2875 -3.6802 8 6 0.1224 3.3693 -2.5987 9 6 0.4508 2.7488 -1.4080 10 6 1.9955 -0.7659 1.1375 11 6 2.0814 -2.2461 0.7597 12 6 2.9695 -2.4063 -0.4758 13 6 0.6795 -2.7762 0.4523 14 6 2.6811 -3.0359 1.9248 15 7 2.7639 -4.4530 1.5628 16 6 1.7156 -5.2912 1.8340 17 1 1.4511 -6.0694 1.1332 18 6 0.9928 -5.1409 3.0095 19 7 1.5338 -4.5277 4.0408 20 14 -0.7476 -5.8090 3.1278 21 1 -0.7308 -7.2767 2.9022 22 1 -1.2976 -5.5214 4.4768 23 1 -1.5981 -5.1597 2.0982 24 6 3.9682 -4.9734 0.9107 25 6 3.9568 -6.4392 0.4724 26 6 4.7956 -6.0075 1.6769 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.5611 1.9273 0.8310 31 1 3.0797 1.3444 0.1082 32 1 3.4248 1.4248 -2.2915 33 1 2.8352 2.5220 -4.4156 34 1 0.7229 3.7723 -4.6105 35 1 -0.8039 3.9181 -2.6841 36 1 -0.2186 2.8130 -0.5629 37 1 1.3314 -0.6475 1.9938 38 1 2.9888 -0.3983 1.3946 39 1 3.0311 -3.4608 -0.7447 40 1 2.5423 -1.8436 -1.3059 41 1 3.9683 -2.0286 -0.2569 42 1 -0.0027 -2.4836 1.2505 43 1 0.3326 -2.3593 -0.4932 44 1 0.7098 -3.8634 0.3806 45 1 2.0485 -2.9218 2.8050 46 1 3.6799 -2.6582 2.1438 47 1 1.0579 -4.4865 4.8850 48 1 4.5063 -4.2639 0.2821 49 1 3.0535 -7.0165 0.6695 50 1 4.4874 -6.6943 -0.4450 51 1 5.8781 -5.9786 1.5521 52 1 4.4442 -6.3003 2.6663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352738920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:50 Heat of formation + Delta-G solvation = 84.545383 kcal Electronic energy + Delta-G solvation = -27692.740474 eV Core-core repulsion = 24273.038673 eV Total energy + Delta-G solvation = -3419.701801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.57457 -38.27533 -36.77922 -34.70023 -32.75990 -31.32922 -30.95515 -29.75740 -27.82511 -26.27555 -26.00729 -25.49408 -23.40805 -22.57988 -22.10966 -21.27885 -20.70994 -19.67347 -18.11727 -16.79388 -16.19298 -15.57000 -15.47156 -15.31000 -15.06687 -14.78465 -14.52741 -14.02098 -13.81921 -13.48169 -13.01137 -12.92982 -12.89670 -12.62951 -12.47018 -12.30136 -12.00113 -11.72813 -11.59762 -11.29689 -11.06420 -10.97968 -10.86402 -10.84260 -10.74834 -10.56507 -10.36866 -10.27352 -9.96611 -9.84177 -9.61327 -9.45201 -9.36748 -9.09918 -8.95278 -8.81491 -8.39034 -7.95847 -6.37847 -5.79181 -3.31260 1.28845 1.35570 3.34960 3.41122 3.43957 3.67287 4.34873 4.47581 4.76100 4.80905 4.93648 5.02603 5.04643 5.23220 5.33819 5.37698 5.44520 5.49589 5.53675 5.61625 5.69998 5.80223 5.92694 5.96057 5.98126 6.01419 6.02658 6.18522 6.21174 6.24942 6.29875 6.37805 6.40096 6.44311 6.55810 6.57611 6.61473 6.70367 6.70880 6.75342 6.87513 6.94513 7.06801 7.14169 7.15148 7.21519 7.30615 7.38358 7.43913 7.61641 7.72738 7.86219 8.56000 9.21442 9.84632 10.43108 11.21418 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003454 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.772836 B = 8105.693133 C = 9046.772192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.525 5.525 3 C 0.090 3.910 4 C -0.068 4.068 5 C -0.099 4.099 6 C -0.123 4.123 7 C -0.126 4.126 8 C -0.124 4.124 9 C -0.115 4.115 10 C 0.066 3.934 11 C -0.070 4.070 12 C -0.121 4.121 13 C -0.132 4.132 14 C 0.162 3.838 15 N -0.545 5.545 16 C -0.254 4.254 17 H 0.062 0.938 18 C 0.020 3.980 19 N -0.886 5.886 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.125 3.875 25 C -0.198 4.198 26 C -0.225 4.225 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.255 0.745 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 13.936 -10.792 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.248 5.248 3 C -0.038 4.038 4 C -0.068 4.068 5 C -0.117 4.117 6 C -0.141 4.141 7 C -0.145 4.145 8 C -0.142 4.142 9 C -0.133 4.133 10 C -0.062 4.062 11 C -0.073 4.073 12 C -0.178 4.178 13 C -0.189 4.189 14 C 0.035 3.965 15 N -0.261 5.261 16 C -0.383 4.383 17 H 0.079 0.921 18 C -0.181 4.181 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.016 3.984 25 C -0.236 4.236 26 C -0.267 4.267 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.040 0.960 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.492 13.811 -11.020 17.675 hybrid contribution -1.205 -0.005 0.978 1.552 sum -0.712 13.806 -10.042 17.087 Atomic orbital electron populations 1.22941 0.87865 1.04077 0.99531 1.61970 1.07726 1.10846 1.44261 1.21137 1.00361 0.89355 0.92943 1.19820 0.94429 0.96670 0.95886 1.21052 0.99739 0.98439 0.92480 1.21143 0.97096 0.98138 0.97684 1.21100 0.94906 0.99928 0.98534 1.21082 0.99546 1.00147 0.93415 1.21070 0.96499 0.97918 0.97848 1.22263 0.98570 0.95071 0.90258 1.21117 0.96709 0.91576 0.97921 1.21700 0.97483 1.01000 0.97629 1.21989 0.94964 1.03800 0.98119 1.20896 0.97687 0.82176 0.95760 1.43275 1.11766 1.03674 1.67385 1.18832 1.05170 1.13575 1.00765 0.92076 1.25141 0.98994 0.99140 0.94832 1.69918 1.36947 1.45447 1.00472 0.86584 0.85677 0.79037 0.76869 1.20794 1.21735 1.20579 1.21306 0.90895 0.88643 0.97602 1.23001 1.02491 1.00947 0.97204 1.23355 0.95616 1.10678 0.97011 0.96468 0.92031 0.88938 0.94501 0.90140 0.85947 0.86290 0.86491 0.86432 0.86527 0.94538 0.92062 0.92604 0.93210 0.95019 0.94771 0.94367 0.89770 0.89014 0.96028 0.93457 0.89310 0.88627 0.91056 0.91555 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 8.53 60.06 0.51 0.56 16 2 N -0.52 -7.54 3.70 -244.37 -0.90 -8.44 16 3 C 0.09 1.11 5.05 -4.97 -0.03 1.09 16 4 C -0.07 -0.80 4.88 -104.62 -0.51 -1.31 16 5 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 6 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 8 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 9 C -0.11 -1.27 7.97 -39.58 -0.32 -1.58 16 10 C 0.07 1.07 4.22 -3.82 -0.02 1.06 16 11 C -0.07 -1.30 0.67 -154.51 -0.10 -1.40 16 12 C -0.12 -2.10 7.14 37.16 0.27 -1.84 16 13 C -0.13 -2.59 6.62 37.16 0.25 -2.34 16 14 C 0.16 3.56 4.43 -4.04 -0.02 3.54 16 15 N -0.54 -12.71 2.28 -165.66 -0.38 -13.09 16 16 C -0.25 -6.48 6.11 -15.06 -0.09 -6.57 16 17 H 0.06 1.60 6.65 -52.48 -0.35 1.25 16 18 C 0.02 0.52 4.93 -17.43 -0.09 0.43 16 19 N -0.89 -24.49 11.52 55.49 0.64 -23.85 16 20 Si 0.89 20.97 29.61 -169.99 -5.03 15.94 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.12 2.62 5.24 -67.93 -0.36 2.26 16 25 C -0.20 -3.92 9.80 -26.73 -0.26 -4.18 16 26 C -0.23 -4.65 10.34 -26.73 -0.28 -4.92 16 27 H 0.02 0.23 8.13 -51.93 -0.42 -0.19 16 28 H 0.06 0.82 6.17 -51.93 -0.32 0.50 16 29 H 0.09 1.43 4.01 -51.93 -0.21 1.22 16 30 H 0.04 0.44 8.07 -51.93 -0.42 0.03 16 31 H 0.08 0.95 7.73 -51.93 -0.40 0.55 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.12 1.19 8.03 -52.49 -0.42 0.76 16 37 H 0.04 0.63 7.84 -51.92 -0.41 0.22 16 38 H 0.06 0.95 7.56 -51.93 -0.39 0.55 16 39 H 0.05 1.05 6.00 -51.93 -0.31 0.74 16 40 H 0.05 0.84 7.54 -51.93 -0.39 0.45 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.69 7.68 -51.93 -0.40 0.29 16 43 H 0.04 0.69 6.18 -51.93 -0.32 0.37 16 44 H 0.08 1.89 5.53 -51.93 -0.29 1.60 16 45 H 0.09 2.32 5.56 -51.93 -0.29 2.03 16 46 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 47 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 48 H 0.09 1.72 6.61 -51.93 -0.34 1.38 16 49 H 0.10 2.06 6.41 -51.93 -0.33 1.73 16 50 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 52 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 391.09 15.07 5.89 5.89 Total: -1.00 -26.87 391.09 -11.35 -38.22 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.95 Total: 6.94 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.61 Total: -21.62 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.64 Total: -45.38 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -26.87 -11.35 -38.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352738920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.766 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds