Wall clock time and date at job start Tue Mar 31 2020 11:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00143 * 2 1 4 4 C 1.50700 * 109.46992 * 293.95849 * 3 2 1 5 5 C 1.38237 * 119.99606 * 269.72011 * 4 3 2 6 6 C 1.38237 * 119.99714 * 179.76415 * 5 4 3 7 7 C 1.38234 * 119.99978 * 0.51404 * 6 5 4 8 8 C 1.38234 * 119.99937 * 359.74495 * 7 6 5 9 9 C 1.38232 * 120.00225 * 359.97438 * 8 7 6 10 10 C 1.46896 * 111.00280 * 123.95274 * 2 1 3 11 11 C 1.53004 * 109.46921 * 85.87440 * 10 2 1 12 12 C 1.53000 * 109.46810 * 57.79245 * 11 10 2 13 13 C 1.52999 * 109.47497 * 297.79367 * 11 10 2 14 14 C 1.52999 * 109.47132 * 177.79025 * 11 10 2 15 15 N 1.46497 * 109.47186 * 180.02562 * 14 11 10 16 16 C 1.36940 * 119.99499 * 270.00015 * 15 14 11 17 17 H 1.08008 * 119.99762 * 142.29999 * 16 15 14 18 18 C 1.38815 * 120.00248 * 322.29475 * 16 15 14 19 19 N 1.31619 * 119.99594 * 337.86950 * 18 16 15 20 20 Si 1.86792 * 120.00089 * 157.87079 * 18 16 15 21 21 H 1.48500 * 109.47098 * 60.00154 * 20 18 16 22 22 H 1.48496 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47429 * 300.00502 * 20 18 16 24 24 C 1.46499 * 120.00588 * 89.99642 * 15 14 11 25 25 C 1.52999 * 117.50011 * 184.04220 * 24 15 14 26 26 C 1.52998 * 117.49803 * 115.41921 * 24 15 14 27 27 H 1.08998 * 109.46765 * 300.02382 * 1 2 3 28 28 H 1.08998 * 109.47263 * 60.01979 * 1 2 3 29 29 H 1.08997 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46544 * 53.95476 * 3 2 1 31 31 H 1.08999 * 109.47199 * 173.95489 * 3 2 1 32 32 H 1.07998 * 120.00396 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.99812 * 180.23027 * 6 5 4 34 34 H 1.08002 * 119.99737 * 179.72261 * 7 6 5 35 35 H 1.08003 * 119.99717 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00244 * 179.97438 * 9 8 7 37 37 H 1.09008 * 109.47085 * 325.88241 * 10 2 1 38 38 H 1.08993 * 109.47678 * 205.87548 * 10 2 1 39 39 H 1.09005 * 109.47143 * 179.97438 * 12 11 10 40 40 H 1.09004 * 109.47415 * 300.00264 * 12 11 10 41 41 H 1.09003 * 109.47657 * 59.99833 * 12 11 10 42 42 H 1.09004 * 109.46631 * 311.30875 * 13 11 10 43 43 H 1.09001 * 109.47305 * 71.30790 * 13 11 10 44 44 H 1.08998 * 109.46959 * 191.31204 * 13 11 10 45 45 H 1.08995 * 109.47182 * 60.00435 * 14 11 10 46 46 H 1.09002 * 109.47306 * 300.00237 * 14 11 10 47 47 H 0.96999 * 119.99897 * 185.02718 * 19 18 16 48 48 H 1.09001 * 115.54650 * 329.75171 * 24 15 14 49 49 H 1.09000 * 117.50015 * 359.97438 * 25 24 15 50 50 H 1.09002 * 117.49874 * 145.02314 * 25 24 15 51 51 H 1.09005 * 117.50270 * 214.98498 * 26 24 15 52 52 H 1.09005 * 117.50083 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4965 1.9698 -2.3782 6 6 2.1653 2.5855 -3.5708 7 6 0.9795 3.2875 -3.6802 8 6 0.1224 3.3693 -2.5987 9 6 0.4508 2.7488 -1.4080 10 6 1.9955 -0.7659 1.1375 11 6 2.0814 -2.2461 0.7597 12 6 2.9695 -2.4063 -0.4758 13 6 0.6795 -2.7762 0.4523 14 6 2.6811 -3.0359 1.9248 15 7 2.7639 -4.4530 1.5628 16 6 1.7156 -5.2912 1.8340 17 1 1.4511 -6.0694 1.1332 18 6 0.9928 -5.1409 3.0095 19 7 1.5338 -4.5277 4.0408 20 14 -0.7476 -5.8090 3.1278 21 1 -0.7308 -7.2767 2.9022 22 1 -1.2976 -5.5214 4.4768 23 1 -1.5981 -5.1597 2.0982 24 6 3.9682 -4.9734 0.9107 25 6 3.9568 -6.4392 0.4724 26 6 4.7956 -6.0075 1.6769 27 1 -0.3633 0.5142 0.8898 28 1 -0.3634 0.5135 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.5611 1.9273 0.8310 31 1 3.0797 1.3444 0.1082 32 1 3.4248 1.4248 -2.2915 33 1 2.8352 2.5220 -4.4156 34 1 0.7229 3.7723 -4.6105 35 1 -0.8039 3.9181 -2.6841 36 1 -0.2186 2.8130 -0.5629 37 1 1.3314 -0.6475 1.9938 38 1 2.9888 -0.3983 1.3946 39 1 3.0311 -3.4608 -0.7447 40 1 2.5423 -1.8436 -1.3059 41 1 3.9683 -2.0286 -0.2569 42 1 -0.0027 -2.4836 1.2505 43 1 0.3326 -2.3593 -0.4932 44 1 0.7098 -3.8634 0.3806 45 1 2.0485 -2.9218 2.8050 46 1 3.6799 -2.6582 2.1438 47 1 1.0579 -4.4865 4.8850 48 1 4.5063 -4.2639 0.2821 49 1 3.0535 -7.0165 0.6695 50 1 4.4874 -6.6943 -0.4450 51 1 5.8781 -5.9786 1.5521 52 1 4.4442 -6.3003 2.6663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352738920.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:49 Heat of formation + Delta-G solvation = 73.855500 kcal Electronic energy + Delta-G solvation = -27693.204022 eV Core-core repulsion = 24273.038673 eV Total energy + Delta-G solvation = -3420.165349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.52952 -39.64312 -38.24645 -36.13113 -34.53017 -32.45532 -31.74850 -31.42523 -29.13696 -27.65068 -27.49099 -26.99411 -25.13005 -23.43939 -23.18531 -22.91254 -21.68078 -21.42923 -19.64657 -18.07633 -17.56166 -17.10829 -16.74685 -16.49389 -16.39193 -16.10399 -15.70319 -15.64008 -15.14208 -14.52721 -14.35733 -14.28632 -14.14473 -14.01321 -13.61699 -13.48996 -13.44352 -13.27148 -12.95520 -12.71775 -12.59966 -12.54698 -12.41426 -12.19574 -12.00617 -11.98722 -11.91389 -11.75717 -11.65677 -11.49080 -11.23928 -11.12429 -10.99316 -10.70635 -10.35117 -9.73668 -9.64711 -9.12049 -8.30779 -7.76976 -5.32303 0.49076 0.57733 1.43108 1.46881 1.51213 2.50436 2.80617 3.20170 3.28890 3.48834 3.66325 3.89449 4.00700 4.14978 4.22676 4.29011 4.32304 4.38499 4.41030 4.45302 4.49163 4.57687 4.61363 4.65043 4.69191 4.71956 4.82323 4.83168 4.89367 4.98690 5.01258 5.06869 5.11722 5.16243 5.17841 5.18892 5.23470 5.33644 5.41900 5.50146 5.59632 5.62285 5.62600 5.68285 5.69493 5.77813 5.81325 5.91702 5.96398 6.15631 6.20806 6.24469 6.56195 7.24936 7.96171 8.47706 9.18867 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.003454 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.772836 B = 8105.693133 C = 9046.772192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.525 5.525 3 C 0.093 3.907 4 C -0.082 4.082 5 C -0.112 4.112 6 C -0.129 4.129 7 C -0.129 4.129 8 C -0.129 4.129 9 C -0.126 4.126 10 C 0.076 3.924 11 C -0.062 4.062 12 C -0.107 4.107 13 C -0.118 4.118 14 C 0.166 3.834 15 N -0.557 5.557 16 C -0.242 4.242 17 H 0.053 0.947 18 C -0.023 4.023 19 N -0.916 5.916 20 Si 0.935 3.065 21 H -0.280 1.280 22 H -0.297 1.297 23 H -0.276 1.276 24 C 0.111 3.889 25 C -0.184 4.184 26 C -0.224 4.224 27 H 0.019 0.981 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.120 0.880 37 H 0.020 0.980 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.017 0.983 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.249 0.751 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.097 0.903 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 15.194 -13.286 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.249 5.249 3 C -0.035 4.035 4 C -0.083 4.083 5 C -0.131 4.131 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.144 4.144 10 C -0.053 4.053 11 C -0.065 4.065 12 C -0.164 4.164 13 C -0.175 4.175 14 C 0.040 3.960 15 N -0.274 5.274 16 C -0.373 4.373 17 H 0.071 0.929 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.764 3.236 21 H -0.206 1.206 22 H -0.223 1.223 23 H -0.202 1.202 24 C 0.002 3.998 25 C -0.222 4.222 26 C -0.265 4.265 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.039 0.961 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.058 0.942 48 H 0.130 0.870 49 H 0.091 0.909 50 H 0.125 0.875 51 H 0.115 0.885 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.011 15.068 -13.538 20.282 hybrid contribution -1.323 -0.364 1.679 2.168 sum -0.313 14.704 -11.860 18.893 Atomic orbital electron populations 1.22848 0.87763 1.03133 1.00153 1.61914 1.07830 1.12207 1.42907 1.21136 1.00575 0.88044 0.93695 1.19802 0.95197 0.97578 0.95696 1.21205 0.99943 0.98993 0.92919 1.21428 0.97665 0.97689 0.97861 1.21447 0.94491 0.99388 0.99380 1.21378 1.00400 0.99871 0.93073 1.21213 0.96428 0.98207 0.98590 1.22050 0.98950 0.93892 0.90381 1.20922 0.95930 0.92547 0.97068 1.21544 0.97730 1.00271 0.96872 1.21838 0.95526 1.01757 0.98378 1.20772 0.97020 0.82247 0.95988 1.43419 1.12365 1.04054 1.67585 1.18891 1.05517 1.12934 0.99940 0.92910 1.25611 1.01444 1.00233 0.94791 1.70040 1.37870 1.47454 1.00674 0.85836 0.82793 0.78549 0.76377 1.20553 1.22337 1.20219 1.21563 0.90420 0.89753 0.98053 1.22994 1.01611 0.99438 0.98155 1.23270 0.97346 1.10489 0.95434 0.96262 0.90962 0.90537 0.94304 0.89604 0.85688 0.84413 0.84175 0.84499 0.86176 0.96124 0.91075 0.93880 0.92435 0.93899 0.96368 0.92678 0.92672 0.92437 0.96168 0.94172 0.87026 0.90882 0.87503 0.88506 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 8.53 127.69 1.09 1.33 16 2 N -0.53 -14.42 3.70 -927.05 -3.43 -17.85 16 3 C 0.09 2.16 5.05 85.56 0.43 2.59 16 4 C -0.08 -1.81 4.88 -19.87 -0.10 -1.91 16 5 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 6 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 7 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 8 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 9 C -0.13 -2.55 7.97 22.27 0.18 -2.37 16 10 C 0.08 2.41 4.22 86.31 0.36 2.78 16 11 C -0.06 -2.27 0.67 -52.18 -0.03 -2.30 16 12 C -0.11 -3.53 7.14 71.98 0.51 -3.01 16 13 C -0.12 -4.66 6.62 71.98 0.48 -4.18 16 14 C 0.17 7.42 4.43 86.38 0.38 7.81 16 15 N -0.56 -26.23 2.28 -678.04 -1.54 -27.78 16 16 C -0.24 -12.62 6.11 84.03 0.51 -12.10 16 17 H 0.05 2.81 6.65 -2.91 -0.02 2.79 16 18 C -0.02 -1.25 4.93 84.86 0.42 -0.84 16 19 N -0.92 -52.48 11.52 21.65 0.25 -52.23 16 20 Si 0.94 44.16 29.61 68.60 2.03 46.19 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.11 4.52 5.24 44.99 0.24 4.75 16 25 C -0.18 -6.99 9.80 30.59 0.30 -6.69 16 26 C -0.22 -9.02 10.34 30.59 0.32 -8.70 16 27 H 0.02 0.51 8.13 -2.39 -0.02 0.49 16 28 H 0.07 1.81 6.17 -2.39 -0.01 1.80 16 29 H 0.08 2.32 4.01 -2.39 -0.01 2.31 16 30 H 0.04 0.89 8.07 -2.39 -0.02 0.87 16 31 H 0.09 1.89 7.73 -2.39 -0.02 1.87 16 32 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 34 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.12 2.26 8.03 -2.91 -0.02 2.24 16 37 H 0.02 0.72 7.84 -2.38 -0.02 0.70 16 38 H 0.07 2.12 7.56 -2.39 -0.02 2.10 16 39 H 0.04 1.53 6.00 -2.38 -0.01 1.52 16 40 H 0.06 1.82 7.54 -2.38 -0.02 1.80 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.02 0.73 7.68 -2.38 -0.02 0.72 16 43 H 0.05 1.96 6.18 -2.39 -0.01 1.94 16 44 H 0.05 2.49 5.53 -2.39 -0.01 2.48 16 45 H 0.06 3.02 5.56 -2.39 -0.01 3.01 16 46 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 47 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 48 H 0.11 4.05 6.61 -2.39 -0.02 4.03 16 49 H 0.07 3.12 6.41 -2.39 -0.02 3.11 16 50 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 51 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 52 H 0.05 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -58.77 391.09 4.16 -54.61 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.87 Total: 28.05 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 5.98 Total: -30.99 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.72 Total: -97.86 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -58.77 4.16 -54.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352738920.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.463 kcal (2) G-P(sol) polarization free energy of solvation -58.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds