Wall clock time and date at job start Tue Mar 31 2020 11:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 N 1.46908 * 109.46854 * 180.36882 * 3 2 1 5 5 C 1.46898 * 110.99986 * 65.50079 * 4 3 2 6 6 C 1.52993 * 109.47618 * 75.95209 * 5 4 3 7 7 N 1.46894 * 109.47628 * 175.61826 * 6 5 4 8 8 C 1.48533 * 110.99912 * 52.60304 * 7 6 5 9 9 C 1.54938 * 103.22707 * 159.72473 * 8 7 6 10 10 C 1.54591 * 102.92302 * 322.58438 * 9 8 7 11 11 C 1.47894 * 111.00660 * 170.00137 * 7 6 5 12 12 C 1.46891 * 110.99891 * 301.54234 * 4 3 2 13 13 C 1.50708 * 109.47289 * 293.95647 * 12 4 3 14 14 C 1.38636 * 119.74478 * 269.72646 * 13 12 4 15 15 C 1.37626 * 120.24295 * 179.71847 * 14 13 12 16 16 C 1.40707 * 119.74134 * 0.57395 * 15 14 13 17 17 C 1.41404 * 120.24200 * 179.67790 * 16 15 14 18 18 H 1.07991 * 119.99975 * 206.05199 * 17 16 15 19 19 C 1.39943 * 119.99689 * 26.05594 * 17 16 15 20 20 N 1.30832 * 120.00138 * 14.41063 * 19 17 16 21 21 Si 1.86800 * 120.00157 * 194.41376 * 19 17 16 22 22 H 1.48498 * 109.47058 * 89.99471 * 21 19 17 23 23 H 1.48496 * 109.47593 * 209.99794 * 21 19 17 24 24 H 1.48504 * 109.47103 * 330.00048 * 21 19 17 25 25 C 1.40717 * 119.51739 * 359.70550 * 16 15 14 26 26 C 1.37616 * 119.74489 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47048 * 300.00308 * 1 2 3 29 29 H 1.09002 * 109.46962 * 59.99754 * 1 2 3 30 30 H 1.08997 * 109.46599 * 239.99593 * 2 1 3 31 31 H 1.09002 * 109.46962 * 120.00246 * 2 1 3 32 32 H 1.08998 * 109.47500 * 60.37136 * 3 2 1 33 33 H 1.09004 * 109.47097 * 300.36138 * 3 2 1 34 34 H 1.09001 * 109.46976 * 195.95362 * 5 4 3 35 35 H 1.09009 * 109.46715 * 315.94906 * 5 4 3 36 36 H 1.08996 * 109.47371 * 295.62020 * 6 5 4 37 37 H 1.09005 * 109.47217 * 55.62034 * 6 5 4 38 38 H 1.09006 * 110.67050 * 278.15877 * 8 7 6 39 39 H 1.09002 * 110.66907 * 41.28820 * 8 7 6 40 40 H 1.09004 * 110.72408 * 204.22410 * 9 8 7 41 41 H 1.09001 * 110.72369 * 80.95097 * 9 8 7 42 42 H 1.08990 * 110.31220 * 263.04553 * 10 9 8 43 43 H 1.09002 * 110.31056 * 140.87093 * 10 9 8 44 44 H 1.09005 * 109.91616 * 333.51014 * 11 7 6 45 45 H 1.08999 * 109.91793 * 94.60446 * 11 7 6 46 46 H 1.09003 * 109.47175 * 53.95370 * 12 4 3 47 47 H 1.09003 * 109.47064 * 173.95586 * 12 4 3 48 48 H 1.07999 * 119.87781 * 359.97438 * 14 13 12 49 49 H 1.08001 * 120.12478 * 180.27892 * 15 14 13 50 50 H 0.96997 * 119.99891 * 179.97438 * 20 19 17 51 51 H 1.08006 * 120.12819 * 179.97438 * 25 16 15 52 52 H 1.07993 * 119.88085 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4423 -0.0089 5 6 4.0279 0.8763 -1.2612 6 6 3.8771 1.9024 -2.3859 7 7 4.4902 1.3776 -3.6133 8 6 3.9629 0.0271 -3.9362 9 6 4.2805 -0.1261 -5.4449 10 6 4.0330 1.2967 -5.9965 11 6 4.1593 2.2284 -4.7769 12 6 4.0425 0.7224 1.1551 13 6 3.6916 1.4728 2.4140 14 6 4.5606 2.4342 2.9066 15 6 4.2477 3.1297 4.0522 16 6 3.0463 2.8532 4.7305 17 6 2.7175 3.5566 5.9122 18 1 2.0675 3.1045 6.6466 19 6 3.2344 4.8387 6.1301 20 7 3.7806 5.5004 5.1423 21 14 3.1447 5.6054 7.8311 22 1 4.3663 5.2526 8.5981 23 1 3.0490 7.0819 7.7043 24 1 1.9474 5.0912 8.5433 25 6 2.1747 1.8712 4.2245 26 6 2.5048 1.1928 3.0736 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6822 1.9544 0.8933 33 1 1.6714 1.9582 -0.8868 34 1 5.0813 0.6250 -1.1375 35 1 3.4669 -0.0238 -1.5130 36 1 2.8189 2.0954 -2.5622 37 1 4.3729 2.8302 -2.1002 38 1 4.4794 -0.7368 -3.3548 39 1 2.8877 -0.0177 -3.7629 40 1 3.6045 -0.8434 -5.9105 41 1 5.3192 -0.4218 -5.5923 42 1 3.0334 1.3677 -6.4249 43 1 4.7849 1.5486 -6.7444 44 1 3.2143 2.7433 -4.6036 45 1 4.9536 2.9562 -4.9426 46 1 3.6083 -0.2767 1.1947 47 1 5.1263 0.6444 1.0687 48 1 5.4846 2.6409 2.3871 49 1 4.9240 3.8813 4.4318 50 1 4.1385 6.3892 5.2933 51 1 1.2501 1.6508 4.7374 52 1 1.8373 0.4390 2.6831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352888152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:43 Heat of formation + Delta-G solvation = 16.577694 kcal Electronic energy + Delta-G solvation = -26705.212303 eV Core-core repulsion = 23282.563202 eV Total energy + Delta-G solvation = -3422.649101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.39443 -38.36841 -36.84855 -33.74819 -33.26240 -32.15819 -30.26353 -29.24988 -29.11573 -27.65719 -26.73909 -24.96471 -23.13750 -22.75269 -21.19180 -20.98675 -20.88768 -19.92698 -19.10915 -17.26686 -16.39165 -16.16638 -15.64990 -15.27705 -15.22870 -14.40125 -14.37618 -14.09444 -13.96431 -13.62489 -13.45276 -13.17967 -13.05796 -12.65025 -12.47978 -12.03452 -11.93096 -11.83542 -11.61524 -11.57082 -11.49769 -11.32929 -11.30054 -11.22834 -11.10243 -11.00179 -10.96953 -10.81475 -10.69293 -10.45403 -10.30688 -10.12460 -9.52537 -9.29181 -9.11774 -8.52297 -7.81929 -7.38384 -7.20281 -6.68219 -4.31334 2.78018 3.09294 3.12320 3.12939 3.20004 3.79446 3.96686 4.36632 4.49230 4.53498 4.73635 4.79564 5.03644 5.07087 5.13475 5.17728 5.26962 5.30755 5.43552 5.47504 5.54791 5.56731 5.59494 5.67364 5.75074 5.76117 5.78495 5.81555 5.91487 5.92981 5.98533 6.00648 6.03773 6.17076 6.20140 6.28211 6.38873 6.43386 6.51507 6.59466 6.76613 6.94600 7.00507 7.12355 7.35451 7.39587 7.52867 7.53563 7.67512 7.93257 8.11060 8.20472 8.35898 8.70534 8.95051 9.03186 10.25412 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.002607 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.194331 B =10738.782260 C =11441.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.164 4.164 3 C 0.055 3.945 4 N -0.528 5.528 5 C 0.051 3.949 6 C 0.054 3.946 7 N -0.517 5.517 8 C 0.033 3.967 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.036 3.964 12 C 0.118 3.882 13 C -0.202 4.202 14 C -0.082 4.082 15 C -0.164 4.164 16 C 0.111 3.889 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.796 5.796 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.226 4.226 26 C -0.086 4.086 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.279 0.721 51 H 0.089 0.911 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -8.134 -16.893 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C -0.073 4.073 4 N -0.250 5.250 5 C -0.077 4.077 6 C -0.074 4.074 7 N -0.242 5.242 8 C -0.095 4.095 9 C -0.163 4.163 10 C -0.169 4.169 11 C -0.092 4.092 12 C -0.008 4.008 13 C -0.203 4.203 14 C -0.101 4.101 15 C -0.183 4.183 16 C 0.108 3.892 17 C -0.494 4.494 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.246 4.246 26 C -0.105 4.105 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.097 0.903 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.105 0.895 49 H 0.136 0.864 50 H 0.090 0.910 51 H 0.107 0.893 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.049 -7.400 -16.817 18.373 hybrid contribution -1.299 -0.235 0.545 1.428 sum -1.250 -7.634 -16.272 18.018 Atomic orbital electron populations 1.21660 0.95739 1.01093 1.01861 1.22202 0.96419 0.99904 1.01721 1.22232 0.87461 0.94738 1.02854 1.62202 1.07179 1.54500 1.01154 1.22143 1.00471 0.95058 0.90032 1.22273 0.96930 0.99239 0.88986 1.64780 1.54928 1.02081 1.02399 1.23238 0.97993 0.92395 0.95866 1.22489 1.02099 0.96569 0.95101 1.22395 1.01710 0.95151 0.97665 1.22858 1.00118 0.96150 0.90106 1.20802 0.98167 0.93644 0.88223 1.18849 0.98591 1.04649 0.98237 1.20516 0.97605 0.95661 0.96276 1.21347 0.97861 1.01917 0.97197 1.17622 0.89950 0.89819 0.91766 1.19586 1.26370 0.99479 1.03953 0.90665 1.25891 0.93095 0.97201 0.98094 1.69822 1.29262 1.11500 1.31614 0.86321 0.79725 0.78160 0.82526 1.19365 1.20367 1.18742 1.20951 1.00046 1.04562 0.99025 1.20376 0.95503 0.98702 0.95898 0.93274 0.92263 0.93207 0.92779 0.91200 0.89290 0.92065 0.90660 0.94746 0.94907 0.89646 0.90077 0.93931 0.91295 0.90760 0.91702 0.91076 0.93817 0.90330 0.95402 0.91860 0.89538 0.86404 0.91001 0.89320 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.16 -2.18 5.03 -26.73 -0.13 -2.31 16 3 C 0.06 0.85 4.77 -3.82 -0.02 0.83 16 4 N -0.53 -8.51 4.63 -236.07 -1.09 -9.61 16 5 C 0.05 0.69 4.41 -3.83 -0.02 0.67 16 6 C 0.05 0.69 5.07 -3.83 -0.02 0.67 16 7 N -0.52 -5.90 5.40 -230.46 -1.24 -7.14 16 8 C 0.03 0.32 5.13 -1.90 -0.01 0.31 16 9 C -0.12 -1.00 7.06 -24.87 -0.18 -1.18 16 10 C -0.13 -1.04 6.93 -25.37 -0.18 -1.22 16 11 C 0.04 0.35 6.69 -2.76 -0.02 0.33 16 12 C 0.12 2.06 4.82 -4.98 -0.02 2.03 16 13 C -0.20 -4.29 4.91 -104.32 -0.51 -4.80 16 14 C -0.08 -1.91 9.67 -39.66 -0.38 -2.30 16 15 C -0.16 -4.28 8.68 -38.87 -0.34 -4.62 16 16 C 0.11 2.97 5.57 -106.82 -0.59 2.37 16 17 C -0.46 -12.42 9.06 -37.74 -0.34 -12.76 16 18 H 0.08 1.94 7.89 -52.49 -0.41 1.53 16 19 C 0.07 1.89 5.20 -17.34 -0.09 1.80 16 20 N -0.80 -20.90 10.86 55.55 0.60 -20.29 16 21 Si 0.91 18.93 29.58 -169.99 -5.03 13.90 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 24 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 25 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 26 C -0.09 -1.87 7.96 -39.66 -0.32 -2.19 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.68 6.25 -51.93 -0.32 0.35 16 31 H 0.07 1.02 5.00 -51.93 -0.26 0.76 16 32 H 0.09 1.63 6.26 -51.93 -0.33 1.31 16 33 H 0.06 0.89 6.82 -51.93 -0.35 0.53 16 34 H 0.07 1.04 7.73 -51.93 -0.40 0.64 16 35 H 0.03 0.44 4.81 -51.92 -0.25 0.19 16 36 H 0.03 0.42 6.67 -51.93 -0.35 0.08 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 39 H 0.04 0.43 8.00 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.46 5.90 -51.93 -0.31 0.16 16 47 H 0.06 1.08 7.76 -51.93 -0.40 0.67 16 48 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 49 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 50 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 51 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 52 H 0.08 1.63 6.45 -52.49 -0.34 1.29 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -26.91 391.16 -13.09 -40.00 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.04 Total: 6.88 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: -3.18 Total: -29.64 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -1.73 Total: -37.04 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -26.91 -13.09 -40.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352888152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.581 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds