Wall clock time and date at job start Tue Mar 31 2020 11:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47323 * 2 1 4 4 N 1.46908 * 109.46854 * 180.36882 * 3 2 1 5 5 C 1.46898 * 110.99986 * 65.50079 * 4 3 2 6 6 C 1.52993 * 109.47618 * 75.95209 * 5 4 3 7 7 N 1.46894 * 109.47628 * 175.61826 * 6 5 4 8 8 C 1.48533 * 110.99912 * 52.60304 * 7 6 5 9 9 C 1.54938 * 103.22707 * 159.72473 * 8 7 6 10 10 C 1.54591 * 102.92302 * 322.58438 * 9 8 7 11 11 C 1.47894 * 111.00660 * 170.00137 * 7 6 5 12 12 C 1.46891 * 110.99891 * 301.54234 * 4 3 2 13 13 C 1.50708 * 109.47289 * 293.95647 * 12 4 3 14 14 C 1.38636 * 119.74478 * 269.72646 * 13 12 4 15 15 C 1.37626 * 120.24295 * 179.71847 * 14 13 12 16 16 C 1.40707 * 119.74134 * 0.57395 * 15 14 13 17 17 C 1.41404 * 120.24200 * 179.67790 * 16 15 14 18 18 H 1.07991 * 119.99975 * 206.05199 * 17 16 15 19 19 C 1.39943 * 119.99689 * 26.05594 * 17 16 15 20 20 N 1.30832 * 120.00138 * 14.41063 * 19 17 16 21 21 Si 1.86800 * 120.00157 * 194.41376 * 19 17 16 22 22 H 1.48498 * 109.47058 * 89.99471 * 21 19 17 23 23 H 1.48496 * 109.47593 * 209.99794 * 21 19 17 24 24 H 1.48504 * 109.47103 * 330.00048 * 21 19 17 25 25 C 1.40717 * 119.51739 * 359.70550 * 16 15 14 26 26 C 1.37616 * 119.74489 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47633 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47048 * 300.00308 * 1 2 3 29 29 H 1.09002 * 109.46962 * 59.99754 * 1 2 3 30 30 H 1.08997 * 109.46599 * 239.99593 * 2 1 3 31 31 H 1.09002 * 109.46962 * 120.00246 * 2 1 3 32 32 H 1.08998 * 109.47500 * 60.37136 * 3 2 1 33 33 H 1.09004 * 109.47097 * 300.36138 * 3 2 1 34 34 H 1.09001 * 109.46976 * 195.95362 * 5 4 3 35 35 H 1.09009 * 109.46715 * 315.94906 * 5 4 3 36 36 H 1.08996 * 109.47371 * 295.62020 * 6 5 4 37 37 H 1.09005 * 109.47217 * 55.62034 * 6 5 4 38 38 H 1.09006 * 110.67050 * 278.15877 * 8 7 6 39 39 H 1.09002 * 110.66907 * 41.28820 * 8 7 6 40 40 H 1.09004 * 110.72408 * 204.22410 * 9 8 7 41 41 H 1.09001 * 110.72369 * 80.95097 * 9 8 7 42 42 H 1.08990 * 110.31220 * 263.04553 * 10 9 8 43 43 H 1.09002 * 110.31056 * 140.87093 * 10 9 8 44 44 H 1.09005 * 109.91616 * 333.51014 * 11 7 6 45 45 H 1.08999 * 109.91793 * 94.60446 * 11 7 6 46 46 H 1.09003 * 109.47175 * 53.95370 * 12 4 3 47 47 H 1.09003 * 109.47064 * 173.95586 * 12 4 3 48 48 H 1.07999 * 119.87781 * 359.97438 * 14 13 12 49 49 H 1.08001 * 120.12478 * 180.27892 * 15 14 13 50 50 H 0.96997 * 119.99891 * 179.97438 * 20 19 17 51 51 H 1.08006 * 120.12819 * 179.97438 * 25 16 15 52 52 H 1.07993 * 119.88085 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4423 -0.0089 5 6 4.0279 0.8763 -1.2612 6 6 3.8771 1.9024 -2.3859 7 7 4.4902 1.3776 -3.6133 8 6 3.9629 0.0271 -3.9362 9 6 4.2805 -0.1261 -5.4449 10 6 4.0330 1.2967 -5.9965 11 6 4.1593 2.2284 -4.7769 12 6 4.0425 0.7224 1.1551 13 6 3.6916 1.4728 2.4140 14 6 4.5606 2.4342 2.9066 15 6 4.2477 3.1297 4.0522 16 6 3.0463 2.8532 4.7305 17 6 2.7175 3.5566 5.9122 18 1 2.0675 3.1045 6.6466 19 6 3.2344 4.8387 6.1301 20 7 3.7806 5.5004 5.1423 21 14 3.1447 5.6054 7.8311 22 1 4.3663 5.2526 8.5981 23 1 3.0490 7.0819 7.7043 24 1 1.9474 5.0912 8.5433 25 6 2.1747 1.8712 4.2245 26 6 2.5048 1.1928 3.0736 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6822 1.9544 0.8933 33 1 1.6714 1.9582 -0.8868 34 1 5.0813 0.6250 -1.1375 35 1 3.4669 -0.0238 -1.5130 36 1 2.8189 2.0954 -2.5622 37 1 4.3729 2.8302 -2.1002 38 1 4.4794 -0.7368 -3.3548 39 1 2.8877 -0.0177 -3.7629 40 1 3.6045 -0.8434 -5.9105 41 1 5.3192 -0.4218 -5.5923 42 1 3.0334 1.3677 -6.4249 43 1 4.7849 1.5486 -6.7444 44 1 3.2143 2.7433 -4.6036 45 1 4.9536 2.9562 -4.9426 46 1 3.6083 -0.2767 1.1947 47 1 5.1263 0.6444 1.0687 48 1 5.4846 2.6409 2.3871 49 1 4.9240 3.8813 4.4318 50 1 4.1385 6.3892 5.2933 51 1 1.2501 1.6508 4.7374 52 1 1.8373 0.4390 2.6831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352888152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:42 Heat of formation + Delta-G solvation = 2.603633 kcal Electronic energy + Delta-G solvation = -26705.818264 eV Core-core repulsion = 23282.563202 eV Total energy + Delta-G solvation = -3423.255061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.48322 -39.65149 -38.40068 -35.57206 -34.24139 -33.36852 -31.83677 -31.10722 -29.91307 -28.98340 -28.02955 -26.44623 -24.50356 -23.78921 -22.83279 -22.30720 -21.69859 -21.33621 -20.38578 -19.20161 -17.37017 -17.18714 -16.98081 -16.78095 -16.35673 -15.92575 -15.68671 -15.38333 -15.11744 -14.93498 -14.79176 -14.46924 -14.22176 -13.93290 -13.74771 -13.54464 -13.30980 -13.14872 -12.92251 -12.81427 -12.69179 -12.59776 -12.49022 -12.30328 -12.27110 -12.22627 -12.06410 -12.04298 -11.94611 -11.88496 -11.43931 -11.36123 -11.29052 -11.11116 -11.00546 -9.39229 -9.29891 -9.22572 -8.94973 -8.57749 -6.31480 0.97994 1.19220 1.37500 1.50495 1.51731 2.21686 2.66106 2.91916 3.40135 3.75497 3.79584 3.81587 3.94000 4.02660 4.09024 4.19792 4.24056 4.28065 4.35020 4.37554 4.44264 4.48438 4.60807 4.63134 4.66061 4.70317 4.70856 4.82248 4.85014 4.90335 4.96012 4.98261 5.01112 5.04876 5.09248 5.10298 5.18051 5.20148 5.21595 5.26669 5.32704 5.39317 5.48358 5.50906 5.75371 5.95323 5.97946 6.05182 6.13850 6.18611 6.33906 6.37346 6.43596 6.75565 6.98203 7.08379 8.38019 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.002607 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.194331 B =10738.782260 C =11441.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.155 4.155 3 C 0.059 3.941 4 N -0.544 5.544 5 C 0.061 3.939 6 C 0.063 3.937 7 N -0.529 5.529 8 C 0.030 3.970 9 C -0.120 4.120 10 C -0.127 4.127 11 C 0.031 3.969 12 C 0.124 3.876 13 C -0.186 4.186 14 C -0.089 4.089 15 C -0.188 4.188 16 C 0.078 3.922 17 C -0.502 4.502 18 H 0.072 0.928 19 C 0.032 3.968 20 N -0.831 5.831 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.241 4.241 26 C -0.079 4.079 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.040 0.960 45 H 0.076 0.924 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.285 0.715 51 H 0.093 0.907 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -9.661 -18.694 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.193 4.193 3 C -0.069 4.069 4 N -0.267 5.267 5 C -0.067 4.067 6 C -0.065 4.065 7 N -0.254 5.254 8 C -0.098 4.098 9 C -0.158 4.158 10 C -0.165 4.165 11 C -0.097 4.097 12 C -0.003 4.003 13 C -0.188 4.188 14 C -0.108 4.108 15 C -0.207 4.207 16 C 0.076 3.924 17 C -0.532 4.532 18 H 0.090 0.910 19 C -0.182 4.182 20 N -0.458 5.458 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.261 4.261 26 C -0.098 4.098 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.366 -8.941 -18.641 20.678 hybrid contribution -1.162 0.161 0.926 1.494 sum -1.527 -8.781 -17.715 19.831 Atomic orbital electron populations 1.21645 0.94655 1.02104 1.01747 1.22098 0.97324 0.98055 1.01853 1.22143 0.87054 0.96086 1.01628 1.62060 1.07775 1.55115 1.01784 1.22084 1.00307 0.95568 0.88734 1.22086 0.96588 0.98261 0.89608 1.64765 1.55131 1.03146 1.02322 1.23302 0.97878 0.91343 0.97236 1.22493 1.02593 0.96959 0.93801 1.22395 1.02669 0.94535 0.96927 1.22928 0.99838 0.96464 0.90449 1.20706 0.98859 0.93762 0.86927 1.19264 0.97343 1.03059 0.99110 1.20737 0.98609 0.95872 0.95606 1.21288 0.97965 1.02754 0.98735 1.17953 0.90770 0.91099 0.92623 1.19820 1.28052 1.00737 1.04631 0.90956 1.26748 0.92234 0.97165 1.02062 1.69892 1.30122 1.12083 1.33668 0.85202 0.79853 0.77437 0.77172 1.18715 1.19327 1.18275 1.21159 1.00100 1.04705 1.00133 1.20633 0.95937 0.98512 0.94704 0.91691 0.93555 0.92224 0.91275 0.92224 0.92581 0.91221 0.90884 0.93268 0.95116 0.91631 0.90034 0.93957 0.89661 0.90686 0.90749 0.90084 0.94178 0.90549 0.93695 0.91132 0.88276 0.88414 0.90407 0.88893 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.91 71.98 0.71 -2.35 16 2 C -0.15 -3.70 5.03 30.59 0.15 -3.55 16 3 C 0.06 1.73 4.77 86.30 0.41 2.14 16 4 N -0.54 -16.73 4.63 -900.78 -4.17 -20.90 16 5 C 0.06 1.51 4.41 86.30 0.38 1.89 16 6 C 0.06 1.53 5.07 86.30 0.44 1.97 16 7 N -0.53 -11.18 5.40 -883.04 -4.76 -15.95 16 8 C 0.03 0.51 5.13 86.65 0.44 0.96 16 9 C -0.12 -1.60 7.06 31.80 0.22 -1.37 16 10 C -0.13 -1.70 6.93 31.47 0.22 -1.48 16 11 C 0.03 0.56 6.69 86.45 0.58 1.14 16 12 C 0.12 4.10 4.82 85.56 0.41 4.51 16 13 C -0.19 -7.83 4.91 -19.67 -0.10 -7.93 16 14 C -0.09 -4.26 9.67 22.22 0.21 -4.05 16 15 C -0.19 -10.25 8.68 22.73 0.20 -10.06 16 16 C 0.08 4.33 5.57 -21.29 -0.12 4.22 16 17 C -0.50 -28.06 9.06 23.46 0.21 -27.84 16 18 H 0.07 3.90 7.89 -2.92 -0.02 3.88 16 19 C 0.03 1.65 5.20 85.25 0.44 2.09 16 20 N -0.83 -45.30 10.86 21.83 0.24 -45.06 16 21 Si 0.98 39.65 29.58 68.60 2.03 41.68 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.24 -12.07 9.80 22.73 0.22 -11.85 16 26 C -0.08 -3.43 7.96 22.22 0.18 -3.25 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.47 6.25 -2.39 -0.01 1.46 16 31 H 0.06 1.56 5.00 -2.39 -0.01 1.55 16 32 H 0.06 2.03 6.26 -2.39 -0.01 2.01 16 33 H 0.07 1.92 6.82 -2.38 -0.02 1.90 16 34 H 0.07 1.87 7.73 -2.39 -0.02 1.85 16 35 H 0.05 1.10 4.81 -2.38 -0.01 1.08 16 36 H 0.03 0.75 6.67 -2.39 -0.02 0.73 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.08 1.38 7.75 -2.38 -0.02 1.37 16 39 H 0.04 0.73 8.00 -2.39 -0.02 0.71 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.75 7.57 -2.38 -0.02 0.73 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.05 1.36 5.90 -2.39 -0.01 1.34 16 47 H 0.07 2.25 7.76 -2.39 -0.02 2.23 16 48 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 49 H 0.10 5.64 6.15 -2.91 -0.02 5.62 16 50 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 51 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 52 H 0.11 4.16 6.45 -2.91 -0.02 4.14 16 Total: -1.00 -60.17 391.16 -0.56 -60.73 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.88 Total: 34.30 kcal Atomic # 6 Polarization: -60.03 SS G_CDS: 5.23 Total: -54.80 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -8.70 Total: -81.91 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -60.17 -0.56 -60.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352888152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.334 kcal (2) G-P(sol) polarization free energy of solvation -60.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds