Wall clock time and date at job start Tue Mar 31 2020 11:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47032 * 2 1 4 4 C 1.52995 * 109.47374 * 239.99813 * 2 1 3 5 5 C 1.50705 * 109.47095 * 59.99980 * 4 2 1 6 6 H 1.07998 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99896 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47115 * 89.99925 * 9 7 5 11 11 H 1.48505 * 109.47019 * 209.99998 * 9 7 5 12 12 H 1.48497 * 109.47206 * 329.99784 * 9 7 5 13 13 C 1.52999 * 109.46856 * 119.99508 * 2 1 3 14 14 N 1.46893 * 109.47599 * 309.48012 * 13 2 1 15 15 C 1.46850 * 111.00267 * 82.52938 * 14 13 2 16 16 C 1.53032 * 109.52343 * 174.16054 * 15 14 13 17 17 C 1.53121 * 109.28075 * 59.18326 * 16 15 14 18 18 C 1.52993 * 109.52378 * 182.37381 * 17 16 15 19 19 C 1.50702 * 109.47063 * 184.87067 * 18 17 16 20 20 C 1.38678 * 120.42111 * 269.72542 * 19 18 17 21 21 C 1.38623 * 118.42291 * 179.78507 * 20 19 18 22 22 C 1.38235 * 119.15888 * 0.50503 * 21 20 19 23 23 N 1.31849 * 120.76320 * 359.73498 * 22 21 20 24 24 C 1.31885 * 121.72637 * 359.97438 * 23 22 21 25 25 C 1.53123 * 109.20951 * 302.31226 * 17 16 15 26 26 C 1.46845 * 110.99944 * 318.31994 * 14 13 2 27 27 H 1.08996 * 109.46843 * 306.93565 * 1 2 3 28 28 H 1.09001 * 109.46708 * 66.93068 * 1 2 3 29 29 H 1.08999 * 109.47140 * 186.92894 * 1 2 3 30 30 H 1.09003 * 109.46811 * 144.09437 * 3 2 1 31 31 H 1.08993 * 109.46849 * 264.09645 * 3 2 1 32 32 H 1.08995 * 109.46911 * 24.09912 * 3 2 1 33 33 H 1.09000 * 109.47599 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46862 * 300.00357 * 4 2 1 35 35 H 0.97005 * 120.00009 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47124 * 189.47189 * 13 2 1 37 37 H 1.09010 * 109.46753 * 69.48093 * 13 2 1 38 38 H 1.09001 * 109.45953 * 54.14335 * 15 14 13 39 39 H 1.08998 * 109.45377 * 294.17836 * 15 14 13 40 40 H 1.08993 * 109.50735 * 299.24003 * 16 15 14 41 41 H 1.09005 * 109.50193 * 179.12220 * 16 15 14 42 42 H 1.09001 * 109.52034 * 62.24256 * 17 16 15 43 43 H 1.09002 * 109.47520 * 304.87022 * 18 17 16 44 44 H 1.08999 * 109.47179 * 64.87789 * 18 17 16 45 45 H 1.07997 * 120.78447 * 0.02562 * 20 19 18 46 46 H 1.07996 * 120.41991 * 180.22051 * 21 20 19 47 47 H 1.07999 * 119.61382 * 179.75127 * 22 21 20 48 48 H 1.08001 * 119.61772 * 180.02562 * 24 23 22 49 49 H 1.08997 * 109.50242 * 177.62341 * 25 17 16 50 50 H 1.09003 * 109.50257 * 297.74406 * 25 17 16 51 51 H 1.09001 * 109.46627 * 305.85561 * 26 14 13 52 52 H 1.09001 * 109.46322 * 65.82137 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8714 -0.4816 -3.7319 8 7 1.4326 0.1380 -4.8057 9 14 2.9453 -2.0004 -3.9033 10 1 2.0868 -3.2112 -3.9493 11 1 3.7378 -1.9075 -5.1558 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2493 14 7 1.3731 -0.1730 2.4378 15 6 0.0533 -0.7872 2.6310 16 6 -0.5482 -0.3020 3.9519 17 6 -0.6745 1.2236 3.9197 18 6 -1.2202 1.7198 5.2602 19 6 -1.4568 3.2064 5.1869 20 6 -0.4527 4.0955 5.5398 21 6 -0.7138 5.4541 5.4524 22 6 -1.9609 5.8745 5.0296 23 7 -2.8936 5.0003 4.7067 24 6 -2.6787 3.7007 4.7722 25 6 0.7055 1.8382 3.6699 26 6 1.2712 1.2897 2.3563 27 1 -0.3633 0.6175 0.8214 28 1 -0.3633 0.4027 -0.9455 29 1 -0.3633 -1.0201 0.1240 30 1 2.9460 1.5076 0.6027 31 1 2.2608 1.7498 -1.0222 32 1 1.2767 2.0977 0.4196 33 1 3.1301 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 1.6675 -0.1930 -5.6868 36 1 3.1168 -0.5770 1.3379 37 1 1.8214 -1.7861 1.1687 38 1 0.1578 -1.8719 2.6562 39 1 -0.6027 -0.5047 1.8076 40 1 0.1004 -0.5962 4.7769 41 1 -1.5345 -0.7460 4.0875 42 1 -1.3538 1.5161 3.1191 43 1 -2.1597 1.2128 5.4802 44 1 -0.4983 1.5054 6.0482 45 1 0.5110 3.7378 5.8710 46 1 0.0460 6.1749 5.7158 47 1 -2.1736 6.9312 4.9627 48 1 -3.4670 3.0149 4.4992 49 1 0.6145 2.9224 3.6040 50 1 1.3739 1.5777 4.4905 51 1 2.2601 1.7136 2.1821 52 1 0.6094 1.5625 1.5343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359960369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:32 Heat of formation + Delta-G solvation = 50.954545 kcal Electronic energy + Delta-G solvation = -27575.438861 eV Core-core repulsion = 24154.280452 eV Total energy + Delta-G solvation = -3421.158409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65783 -39.99020 -36.88979 -34.28904 -32.60383 -32.12372 -31.28632 -30.96961 -28.11199 -27.78889 -26.79250 -25.62433 -23.83699 -23.11196 -22.42062 -21.97237 -21.02680 -19.54871 -18.13395 -17.29388 -16.74407 -16.50254 -15.52763 -15.49709 -15.21812 -14.87413 -14.48549 -14.19651 -14.10433 -13.88816 -13.54115 -13.28134 -13.13562 -12.95376 -12.79703 -12.63913 -12.43827 -12.20723 -11.84534 -11.73810 -11.47094 -11.23894 -11.05346 -10.93728 -10.70616 -10.55812 -10.52426 -10.29714 -10.16778 -10.06530 -9.92041 -9.86408 -9.62993 -9.61909 -9.57310 -9.09655 -9.01471 -8.52670 -7.57005 -6.03136 -3.99533 0.89421 1.06989 3.30158 3.38185 3.41707 3.59092 4.22171 4.27953 4.45756 4.49165 4.54443 4.72538 4.75282 4.83637 4.90460 4.97355 5.22833 5.29685 5.33024 5.39581 5.45307 5.48687 5.53464 5.57779 5.60560 5.67057 5.69438 5.77888 5.88287 5.92739 5.96626 6.01013 6.04317 6.09383 6.15650 6.17794 6.21408 6.29186 6.34348 6.37266 6.49420 6.50343 6.58359 6.61925 6.95095 7.06896 7.18453 7.27740 7.38950 7.48959 7.50529 7.76898 7.81303 8.55799 9.01975 9.59960 11.09907 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.002938 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.027149 B = 9529.139515 C =10161.245354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.001 4.001 5 C -0.509 4.509 6 H 0.076 0.924 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.532 5.532 15 C 0.025 3.975 16 C -0.108 4.108 17 C -0.082 4.082 18 C -0.072 4.072 19 C -0.125 4.125 20 C -0.072 4.072 21 C -0.171 4.171 22 C 0.088 3.912 23 N -0.484 5.484 24 C 0.098 3.902 25 C -0.114 4.114 26 C 0.027 3.973 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.008 0.992 35 H 0.262 0.738 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.133 0.867 47 H 0.153 0.847 48 H 0.153 0.847 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.078 0.922 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 5.182 23.414 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 C -0.206 4.206 4 C -0.039 4.039 5 C -0.547 4.547 6 H 0.094 0.906 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.255 5.255 15 C -0.102 4.102 16 C -0.146 4.146 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.127 4.127 20 C -0.098 4.098 21 C -0.191 4.191 22 C -0.069 4.069 23 N -0.192 5.192 24 C -0.059 4.059 25 C -0.152 4.152 26 C -0.100 4.100 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.151 0.849 46 H 0.151 0.849 47 H 0.170 0.830 48 H 0.170 0.830 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.096 0.904 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.628 5.366 23.367 24.418 hybrid contribution 1.027 -0.953 -0.753 1.590 sum -3.602 4.413 22.615 23.321 Atomic orbital electron populations 1.22363 0.95791 1.00215 1.01756 1.20984 0.95195 0.96018 0.95849 1.22557 0.99221 0.95795 1.03030 1.19605 0.96008 0.95217 0.93095 1.21129 1.31562 1.13236 0.88790 0.90587 1.25024 0.95781 0.96763 0.96015 1.69913 1.46035 1.40637 0.97857 0.86840 0.81297 0.83933 0.77551 1.20488 1.21558 1.19056 1.22434 0.98370 0.98373 0.87555 1.62208 1.19699 1.04946 1.38659 1.22690 0.91253 0.98841 0.97462 1.21617 1.00158 0.94357 0.98449 1.21185 0.97269 0.95595 0.96037 1.20638 1.01952 0.89909 0.98493 1.20940 0.94886 0.97239 0.99586 1.21534 0.98950 0.92934 0.96414 1.22155 0.98732 0.96580 1.01641 1.22741 0.89458 0.99539 0.95130 1.67676 1.34321 1.03189 1.14019 1.22685 0.95771 0.91828 0.95575 1.21796 0.95596 0.99109 0.98688 1.23137 1.01676 0.88530 0.96637 0.93215 0.91117 0.93673 0.93897 0.90919 0.92956 0.96659 0.97334 0.92863 0.91331 0.91749 0.91485 0.91604 0.91578 0.91990 0.91315 0.90708 0.90727 0.84903 0.84908 0.82998 0.83009 0.92118 0.91795 0.90385 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 6.31 37.16 0.23 -2.37 16 2 C -0.08 -1.47 0.53 -154.50 -0.08 -1.55 16 3 C -0.15 -2.70 7.11 37.16 0.26 -2.43 16 4 C 0.00 -0.03 3.07 -27.88 -0.09 -0.12 16 5 C -0.51 -13.88 7.65 -34.44 -0.26 -14.15 16 6 H 0.08 2.23 6.42 -52.49 -0.34 1.89 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.91 -27.63 13.96 55.43 0.77 -26.86 16 9 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 13 C 0.06 0.97 4.91 -3.83 -0.02 0.95 16 14 N -0.53 -7.39 4.86 -234.59 -1.14 -8.53 16 15 C 0.03 0.32 4.77 -3.84 -0.02 0.30 16 16 C -0.11 -1.08 5.38 -26.65 -0.14 -1.23 16 17 C -0.08 -0.80 2.24 -90.50 -0.20 -1.00 16 18 C -0.07 -0.57 4.87 -27.89 -0.14 -0.71 16 19 C -0.12 -1.12 4.72 -104.48 -0.49 -1.61 16 20 C -0.07 -0.61 8.24 -39.28 -0.32 -0.93 16 21 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 22 C 0.09 0.82 11.18 -17.55 -0.20 0.63 16 23 N -0.48 -5.50 10.36 -13.25 -0.14 -5.64 16 24 C 0.10 0.99 10.86 -17.55 -0.19 0.80 16 25 C -0.11 -1.22 4.92 -26.58 -0.13 -1.35 16 26 C 0.03 0.36 3.44 -3.76 -0.01 0.35 16 27 H 0.05 0.79 3.79 -51.93 -0.20 0.59 16 28 H 0.07 1.48 6.42 -51.93 -0.33 1.15 16 29 H 0.04 0.79 7.25 -51.93 -0.38 0.41 16 30 H 0.04 0.70 6.20 -51.93 -0.32 0.38 16 31 H 0.07 1.55 6.37 -51.93 -0.33 1.22 16 32 H 0.05 0.86 5.12 -51.93 -0.27 0.60 16 33 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 34 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.07 1.11 7.89 -51.93 -0.41 0.70 16 37 H 0.06 1.04 7.72 -51.92 -0.40 0.64 16 38 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 39 H 0.07 0.90 3.76 -51.93 -0.20 0.70 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 44 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.06 0.64 6.46 -51.93 -0.34 0.31 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 1.08 6.01 -51.93 -0.31 0.77 16 52 H 0.07 1.04 2.77 -51.93 -0.14 0.89 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -30.47 371.33 -10.40 -40.87 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.53 Total: 2.03 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -2.29 Total: -24.46 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: -0.50 Total: -41.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.47 -10.40 -40.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359960369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.827 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds