Wall clock time and date at job start Tue Mar 31 2020 11:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47032 * 2 1 4 4 C 1.52995 * 109.47374 * 239.99813 * 2 1 3 5 5 C 1.50705 * 109.47095 * 59.99980 * 4 2 1 6 6 H 1.07998 * 119.99875 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00090 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99896 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47115 * 89.99925 * 9 7 5 11 11 H 1.48505 * 109.47019 * 209.99998 * 9 7 5 12 12 H 1.48497 * 109.47206 * 329.99784 * 9 7 5 13 13 C 1.52999 * 109.46856 * 119.99508 * 2 1 3 14 14 N 1.46893 * 109.47599 * 309.48012 * 13 2 1 15 15 C 1.46850 * 111.00267 * 82.52938 * 14 13 2 16 16 C 1.53032 * 109.52343 * 174.16054 * 15 14 13 17 17 C 1.53121 * 109.28075 * 59.18326 * 16 15 14 18 18 C 1.52993 * 109.52378 * 182.37381 * 17 16 15 19 19 C 1.50702 * 109.47063 * 184.87067 * 18 17 16 20 20 C 1.38678 * 120.42111 * 269.72542 * 19 18 17 21 21 C 1.38623 * 118.42291 * 179.78507 * 20 19 18 22 22 C 1.38235 * 119.15888 * 0.50503 * 21 20 19 23 23 N 1.31849 * 120.76320 * 359.73498 * 22 21 20 24 24 C 1.31885 * 121.72637 * 359.97438 * 23 22 21 25 25 C 1.53123 * 109.20951 * 302.31226 * 17 16 15 26 26 C 1.46845 * 110.99944 * 318.31994 * 14 13 2 27 27 H 1.08996 * 109.46843 * 306.93565 * 1 2 3 28 28 H 1.09001 * 109.46708 * 66.93068 * 1 2 3 29 29 H 1.08999 * 109.47140 * 186.92894 * 1 2 3 30 30 H 1.09003 * 109.46811 * 144.09437 * 3 2 1 31 31 H 1.08993 * 109.46849 * 264.09645 * 3 2 1 32 32 H 1.08995 * 109.46911 * 24.09912 * 3 2 1 33 33 H 1.09000 * 109.47599 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46862 * 300.00357 * 4 2 1 35 35 H 0.97005 * 120.00009 * 179.97438 * 8 7 5 36 36 H 1.09000 * 109.47124 * 189.47189 * 13 2 1 37 37 H 1.09010 * 109.46753 * 69.48093 * 13 2 1 38 38 H 1.09001 * 109.45953 * 54.14335 * 15 14 13 39 39 H 1.08998 * 109.45377 * 294.17836 * 15 14 13 40 40 H 1.08993 * 109.50735 * 299.24003 * 16 15 14 41 41 H 1.09005 * 109.50193 * 179.12220 * 16 15 14 42 42 H 1.09001 * 109.52034 * 62.24256 * 17 16 15 43 43 H 1.09002 * 109.47520 * 304.87022 * 18 17 16 44 44 H 1.08999 * 109.47179 * 64.87789 * 18 17 16 45 45 H 1.07997 * 120.78447 * 0.02562 * 20 19 18 46 46 H 1.07996 * 120.41991 * 180.22051 * 21 20 19 47 47 H 1.07999 * 119.61382 * 179.75127 * 22 21 20 48 48 H 1.08001 * 119.61772 * 180.02562 * 24 23 22 49 49 H 1.08997 * 109.50242 * 177.62341 * 25 17 16 50 50 H 1.09003 * 109.50257 * 297.74406 * 25 17 16 51 51 H 1.09001 * 109.46627 * 305.85561 * 26 14 13 52 52 H 1.09001 * 109.46322 * 65.82137 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9172 0.8674 -2.3806 7 6 1.8714 -0.4816 -3.7319 8 7 1.4326 0.1380 -4.8057 9 14 2.9453 -2.0004 -3.9033 10 1 2.0868 -3.2112 -3.9493 11 1 3.7378 -1.9075 -5.1558 12 1 3.8653 -2.0898 -2.7410 13 6 2.0400 -0.7212 1.2493 14 7 1.3731 -0.1730 2.4378 15 6 0.0533 -0.7872 2.6310 16 6 -0.5482 -0.3020 3.9519 17 6 -0.6745 1.2236 3.9197 18 6 -1.2202 1.7198 5.2602 19 6 -1.4568 3.2064 5.1869 20 6 -0.4527 4.0955 5.5398 21 6 -0.7138 5.4541 5.4524 22 6 -1.9609 5.8745 5.0296 23 7 -2.8936 5.0003 4.7067 24 6 -2.6787 3.7007 4.7722 25 6 0.7055 1.8382 3.6699 26 6 1.2712 1.2897 2.3563 27 1 -0.3633 0.6175 0.8214 28 1 -0.3633 0.4027 -0.9455 29 1 -0.3633 -1.0201 0.1240 30 1 2.9460 1.5076 0.6027 31 1 2.2608 1.7498 -1.0222 32 1 1.2767 2.0977 0.4196 33 1 3.1301 -0.7209 -1.2494 34 1 1.6767 -1.7489 -1.2491 35 1 1.6675 -0.1930 -5.6868 36 1 3.1168 -0.5770 1.3379 37 1 1.8214 -1.7861 1.1687 38 1 0.1578 -1.8719 2.6562 39 1 -0.6027 -0.5047 1.8076 40 1 0.1004 -0.5962 4.7769 41 1 -1.5345 -0.7460 4.0875 42 1 -1.3538 1.5161 3.1191 43 1 -2.1597 1.2128 5.4802 44 1 -0.4983 1.5054 6.0482 45 1 0.5110 3.7378 5.8710 46 1 0.0460 6.1749 5.7158 47 1 -2.1736 6.9312 4.9627 48 1 -3.4670 3.0149 4.4992 49 1 0.6145 2.9224 3.6040 50 1 1.3739 1.5777 4.4905 51 1 2.2601 1.7136 2.1821 52 1 0.6094 1.5625 1.5343 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359960369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:31 Heat of formation + Delta-G solvation = 33.451691 kcal Electronic energy + Delta-G solvation = -27576.197841 eV Core-core repulsion = 24154.280452 eV Total energy + Delta-G solvation = -3421.917389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58286 -40.92674 -37.98585 -35.55578 -34.23121 -33.04664 -32.26197 -32.00058 -29.62434 -29.09689 -28.18928 -26.74741 -24.53525 -24.36559 -23.58147 -23.18435 -21.86965 -20.52113 -19.72470 -18.76869 -17.92487 -17.22502 -16.70304 -16.39307 -16.25950 -16.13347 -15.96511 -15.33720 -15.15881 -14.84738 -14.74045 -14.54528 -14.34224 -14.04591 -13.86825 -13.72001 -13.62187 -13.44481 -13.04735 -12.89919 -12.63414 -12.52283 -12.41582 -12.26776 -12.24846 -11.99429 -11.73978 -11.67287 -11.55282 -11.39555 -11.26374 -11.10892 -10.89721 -10.83821 -10.72820 -10.59404 -10.30828 -9.77396 -8.79797 -8.24722 -6.24998 0.23928 0.41702 1.33822 1.35816 1.46981 2.37127 2.91518 3.10449 3.17691 3.59777 3.80888 3.87190 3.93363 4.03122 4.07287 4.12163 4.15000 4.16101 4.25660 4.26448 4.42678 4.56843 4.57699 4.68542 4.72084 4.75322 4.79402 4.82435 4.83923 4.85175 4.94423 4.95321 5.02234 5.06195 5.09879 5.11527 5.17259 5.25210 5.25896 5.29339 5.35344 5.36329 5.38623 5.45346 5.47973 5.57610 5.66500 5.70795 5.79735 5.86964 6.26794 6.36238 6.39933 6.81632 7.09449 7.37388 8.91628 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.002938 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.027149 B = 9529.139515 C =10161.245354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 C -0.141 4.141 4 C 0.001 3.999 5 C -0.503 4.503 6 H 0.040 0.960 7 C 0.000 4.000 8 N -0.955 5.955 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.248 1.248 13 C 0.069 3.931 14 N -0.525 5.525 15 C 0.020 3.980 16 C -0.101 4.101 17 C -0.078 4.078 18 C -0.063 4.063 19 C -0.127 4.127 20 C -0.078 4.078 21 C -0.170 4.170 22 C 0.071 3.929 23 N -0.517 5.517 24 C 0.079 3.921 25 C -0.106 4.106 26 C 0.027 3.973 27 H 0.073 0.927 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.066 0.934 33 H 0.014 0.986 34 H 0.010 0.990 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.152 0.848 46 H 0.158 0.842 47 H 0.169 0.831 48 H 0.159 0.841 49 H 0.062 0.938 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 4.105 26.527 27.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.078 4.078 3 C -0.197 4.197 4 C -0.037 4.037 5 C -0.541 4.541 6 H 0.058 0.942 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.171 1.171 13 C -0.060 4.060 14 N -0.247 5.247 15 C -0.107 4.107 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.129 4.129 20 C -0.104 4.104 21 C -0.190 4.190 22 C -0.085 4.085 23 N -0.226 5.226 24 C -0.078 4.078 25 C -0.144 4.144 26 C -0.100 4.100 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.029 0.971 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.072 0.928 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.170 0.830 46 H 0.176 0.824 47 H 0.186 0.814 48 H 0.176 0.824 49 H 0.081 0.919 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.581 4.288 26.510 27.093 hybrid contribution 0.642 -0.508 -1.703 1.889 sum -2.939 3.780 24.808 25.266 Atomic orbital electron populations 1.22290 0.95556 1.00711 1.00507 1.20967 0.95370 0.96102 0.95411 1.22500 1.00585 0.95842 1.00807 1.19569 0.95754 0.95181 0.93222 1.21408 1.30085 1.12017 0.90632 0.94186 1.25943 0.97603 1.00283 0.95736 1.70071 1.48263 1.42895 0.98474 0.85778 0.79695 0.79869 0.78006 1.19621 1.21495 1.17110 1.22293 0.98687 0.98182 0.86794 1.62276 1.20467 1.05248 1.36754 1.22762 0.90284 0.99096 0.98554 1.21573 1.00946 0.94366 0.96946 1.21115 0.96380 0.95453 0.96699 1.20574 1.02812 0.89127 0.97557 1.21054 0.94586 0.97964 0.99322 1.21846 0.99543 0.93058 0.95968 1.22456 0.98734 0.97212 1.00593 1.23138 0.89890 1.00241 0.95241 1.67648 1.35652 1.04048 1.15257 1.22912 0.96778 0.91775 0.96291 1.21722 0.96180 0.99117 0.97335 1.23081 1.01162 0.88176 0.97629 0.90850 0.95086 0.93144 0.91994 0.94988 0.91562 0.96736 0.97121 0.92893 0.91021 0.91476 0.91190 0.92985 0.90794 0.90400 0.92840 0.89555 0.89394 0.83050 0.82425 0.81390 0.82407 0.91939 0.90747 0.90809 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 6.31 71.98 0.45 -4.41 16 2 C -0.08 -2.83 0.53 -52.18 -0.03 -2.86 16 3 C -0.14 -5.10 7.11 71.98 0.51 -4.58 16 4 C 0.00 0.03 3.07 29.85 0.09 0.12 16 5 C -0.50 -28.36 7.65 25.60 0.20 -28.16 16 6 H 0.04 2.49 6.42 -2.91 -0.02 2.47 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.96 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.94 44.83 27.47 68.60 1.88 46.72 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 13 C 0.07 2.07 4.91 86.30 0.42 2.50 16 14 N -0.52 -13.25 4.86 -896.10 -4.35 -17.60 16 15 C 0.02 0.46 4.77 86.32 0.41 0.88 16 16 C -0.10 -1.69 5.38 30.65 0.16 -1.52 16 17 C -0.08 -1.30 2.24 -10.71 -0.02 -1.32 16 18 C -0.06 -0.80 4.87 29.85 0.15 -0.66 16 19 C -0.13 -2.03 4.72 -19.77 -0.09 -2.12 16 20 C -0.08 -1.12 8.24 22.47 0.19 -0.93 16 21 C -0.17 -2.40 10.11 22.36 0.23 -2.18 16 22 C 0.07 1.26 11.18 84.69 0.95 2.21 16 23 N -0.52 -11.56 10.36 -195.84 -2.03 -13.59 16 24 C 0.08 1.53 10.86 84.67 0.92 2.45 16 25 C -0.11 -1.97 4.92 30.69 0.15 -1.81 16 26 C 0.03 0.65 3.44 86.37 0.30 0.94 16 27 H 0.07 2.31 3.79 -2.39 -0.01 2.30 16 28 H 0.03 1.34 6.42 -2.39 -0.02 1.33 16 29 H 0.05 1.74 7.25 -2.39 -0.02 1.72 16 30 H 0.06 1.97 6.20 -2.39 -0.01 1.95 16 31 H 0.03 1.40 6.37 -2.39 -0.02 1.38 16 32 H 0.07 2.20 5.12 -2.39 -0.01 2.18 16 33 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 34 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 35 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 36 H 0.07 2.14 7.89 -2.39 -0.02 2.12 16 37 H 0.07 2.00 7.72 -2.38 -0.02 1.98 16 38 H 0.07 1.56 7.92 -2.39 -0.02 1.55 16 39 H 0.05 1.33 3.76 -2.39 -0.01 1.32 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 44 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 45 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 48 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 49 H 0.06 1.16 6.46 -2.39 -0.02 1.15 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.87 6.01 -2.39 -0.01 1.85 16 52 H 0.05 1.44 2.77 -2.39 -0.01 1.43 16 Total: -1.00 -68.09 371.33 2.09 -66.00 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.84 Total: 19.61 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 5.44 Total: -41.00 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -6.08 Total: -91.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -68.09 2.09 -66.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359960369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.455 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds