Wall clock time and date at job start Tue Mar 31 2020 11:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46892 * 2 1 4 4 C 1.53004 * 109.47017 * 240.00144 * 2 1 3 5 5 C 1.50697 * 109.47087 * 59.99945 * 4 2 1 6 6 H 1.08005 * 120.00186 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00060 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00168 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00299 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46720 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47246 * 119.99539 * 9 7 5 12 12 H 1.48497 * 109.47274 * 239.99908 * 9 7 5 13 13 C 1.52998 * 109.47518 * 120.00271 * 2 1 3 14 14 N 1.46900 * 109.46909 * 299.99942 * 13 2 1 15 15 C 1.46906 * 111.00315 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.46693 * 35.00071 * 15 14 13 17 17 C 1.52999 * 109.46904 * 275.00420 * 15 14 13 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47164 * 59.99702 * 18 17 15 20 20 C 1.53002 * 109.47415 * 300.00027 * 19 18 17 21 21 H 1.08996 * 109.46550 * 300.00288 * 20 19 18 22 22 C 1.50697 * 109.47106 * 179.97438 * 20 19 18 23 23 C 1.38677 * 120.41704 * 120.00036 * 22 20 19 24 24 C 1.38625 * 118.42269 * 180.02562 * 23 22 20 25 25 C 1.38229 * 119.15952 * 0.02562 * 24 23 22 26 26 N 1.31858 * 120.76545 * 359.97438 * 25 24 23 27 27 C 1.31890 * 121.72139 * 359.70689 * 26 25 24 28 28 C 1.52996 * 109.46972 * 59.99860 * 20 19 18 29 29 H 1.09004 * 109.47075 * 299.99328 * 1 2 3 30 30 H 1.08993 * 109.47417 * 60.00186 * 1 2 3 31 31 H 1.09001 * 109.47150 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46955 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47414 * 299.99858 * 3 2 1 34 34 H 1.09002 * 109.47422 * 60.00270 * 3 2 1 35 35 H 1.08997 * 109.46799 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.46809 * 299.99779 * 4 2 1 37 37 H 0.97004 * 120.00570 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.47347 * 180.02562 * 13 2 1 39 39 H 1.09001 * 109.47365 * 59.99574 * 13 2 1 40 40 H 1.00906 * 111.00324 * 56.04514 * 14 13 2 41 41 H 1.08993 * 109.47839 * 59.99803 * 17 15 14 42 42 H 1.09000 * 109.47160 * 299.99365 * 17 15 14 43 43 H 1.09001 * 109.46998 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47050 * 299.99699 * 18 17 15 45 45 H 1.09000 * 109.47140 * 60.00051 * 19 18 17 46 46 H 1.09001 * 109.47230 * 179.97438 * 19 18 17 47 47 H 1.08002 * 120.78557 * 0.02562 * 23 22 20 48 48 H 1.07996 * 120.42113 * 179.97438 * 24 23 22 49 49 H 1.08003 * 119.61801 * 179.97438 * 25 24 23 50 50 H 1.07997 * 119.61404 * 180.30897 * 27 26 25 51 51 H 1.09000 * 109.47054 * 60.00300 * 28 20 19 52 52 H 1.09001 * 109.46997 * 180.02562 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8702 -0.4821 -3.7319 8 7 2.6263 -1.5514 -3.8527 9 14 1.2469 0.3981 -5.2572 10 1 0.4215 1.5645 -4.8530 11 1 2.4016 0.8647 -6.0661 12 1 0.4217 -0.5355 -6.0650 13 6 2.0401 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4486 15 6 2.0210 -0.6953 3.6703 16 1 3.0229 -1.0916 3.5050 17 6 1.0712 -1.8413 4.0242 18 6 1.5617 -2.5358 5.2963 19 6 1.5959 -1.5279 6.4468 20 6 2.5457 -0.3818 6.0928 21 1 3.5474 -0.7782 5.9272 22 6 2.5788 0.6113 7.2258 23 6 3.7694 0.8914 7.8793 24 6 3.7524 1.8113 8.9163 25 6 2.5575 2.4141 9.2622 26 7 1.4441 2.1233 8.6185 27 6 1.4242 1.2580 7.6234 28 6 2.0552 0.3127 4.8208 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 -0.7208 -1.2495 36 1 1.6766 -1.7489 -1.2492 37 1 2.8606 -1.8828 -4.7337 38 1 3.1301 -0.7209 1.2494 39 1 1.6767 -1.7490 1.2492 40 1 0.5439 0.0413 2.4402 41 1 1.0471 -2.5596 3.2048 42 1 0.0693 -1.4450 4.1895 43 1 0.8848 -3.3520 5.5487 44 1 2.5635 -2.9322 5.1306 45 1 0.5941 -1.1315 6.6125 46 1 1.9449 -2.0227 7.3531 47 1 4.6881 0.4044 7.5873 48 1 4.6609 2.0534 9.4476 49 1 2.5357 3.1316 10.0692 50 1 0.4938 1.0490 7.1164 51 1 1.0534 0.7090 4.9865 52 1 2.7321 1.1289 4.5684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367896478.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:29 Heat of formation + Delta-G solvation = -21.144720 kcal Electronic energy + Delta-G solvation = -26546.701883 eV Core-core repulsion = 23122.417016 eV Total energy + Delta-G solvation = -3424.284867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.37606 -39.92990 -38.53219 -35.59554 -34.33305 -33.46795 -32.73690 -30.52251 -29.60531 -28.67433 -27.88271 -26.50638 -24.95337 -24.45158 -24.25139 -22.82757 -21.90923 -20.75526 -19.43385 -18.32878 -18.02862 -17.13832 -16.97452 -16.52371 -16.09017 -15.65689 -15.53239 -15.33018 -14.98291 -14.85331 -14.70254 -14.46168 -14.37543 -13.93098 -13.91220 -13.75796 -13.69613 -13.32396 -13.23349 -12.82019 -12.67202 -12.59377 -12.48187 -12.27048 -12.18633 -12.10773 -11.99673 -11.86439 -11.58301 -11.43424 -11.29337 -11.16911 -10.84512 -10.70609 -10.62238 -10.51077 -10.30973 -9.79865 -9.16470 -8.14033 -6.20758 0.22778 0.40338 1.39713 1.40839 1.52969 2.43554 2.89841 3.19852 3.24676 3.54184 3.75267 3.77028 3.99881 4.07505 4.11615 4.14239 4.17161 4.23983 4.26760 4.37696 4.41645 4.44309 4.56500 4.59321 4.64173 4.71699 4.74219 4.81391 4.82795 4.94483 4.98025 5.05640 5.09213 5.11281 5.17561 5.20196 5.22919 5.24022 5.27458 5.32406 5.40451 5.46225 5.52822 5.54820 5.57428 5.59553 5.68012 5.84790 5.88694 5.93620 6.19054 6.38682 6.60836 6.94646 7.08671 7.46493 8.98439 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024941 B = 0.002296 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.368821 B =12192.852489 C =12644.381565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.106 4.106 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.086 3.914 14 N -0.680 5.680 15 C 0.090 3.910 16 H 0.066 0.934 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.104 4.104 20 C -0.035 4.035 21 H 0.085 0.915 22 C -0.125 4.125 23 C -0.083 4.083 24 C -0.168 4.168 25 C 0.074 3.926 26 N -0.515 5.515 27 C 0.089 3.911 28 C -0.087 4.087 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.067 0.933 35 H -0.017 1.017 36 H -0.016 1.016 37 H 0.259 0.741 38 H 0.052 0.948 39 H 0.017 0.983 40 H 0.343 0.657 41 H 0.048 0.952 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.151 0.849 48 H 0.160 0.840 49 H 0.173 0.827 50 H 0.156 0.844 51 H 0.066 0.934 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 2.695 27.730 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.164 4.164 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.209 1.209 12 H -0.208 1.208 13 C -0.043 4.043 14 N -0.311 5.311 15 C -0.020 4.020 16 H 0.084 0.916 17 C -0.185 4.185 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.055 4.055 21 H 0.103 0.897 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.188 4.188 25 C -0.082 4.082 26 N -0.224 5.224 27 C -0.068 4.068 28 C -0.125 4.125 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.163 0.837 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.169 0.831 48 H 0.178 0.822 49 H 0.190 0.810 50 H 0.173 0.827 51 H 0.084 0.916 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.212 3.490 27.850 28.069 hybrid contribution 0.249 -1.207 -1.667 2.073 sum 0.037 2.283 26.183 26.283 Atomic orbital electron populations 1.21678 0.94727 1.00361 1.01126 1.20486 0.95752 0.95982 0.93279 1.21497 0.99027 0.95401 1.00436 1.19014 0.94005 0.93994 0.92794 1.21645 1.30059 1.11806 0.91453 0.91670 1.25925 0.95787 0.95943 1.02590 1.70112 1.38930 1.24960 1.23934 0.85527 0.78118 0.78805 0.79397 1.18506 1.20864 1.20808 1.21781 0.98705 0.94284 0.89540 1.60596 1.16706 1.53073 1.00692 1.21573 0.98210 0.92680 0.89565 0.91596 1.22235 0.99931 0.98142 0.98181 1.21433 1.01671 0.97832 0.93886 1.21559 0.99422 0.95150 0.98001 1.20061 1.00949 0.93318 0.91138 0.89715 1.20941 0.94476 0.98922 0.98327 1.21884 0.98407 0.96221 0.94358 1.22451 1.00468 0.97459 0.98383 1.23191 0.88100 0.98359 0.98561 1.67686 1.31406 1.15223 1.08059 1.22755 0.98581 0.92226 0.93194 1.21440 1.01683 0.97235 0.92132 0.91428 0.93587 0.94461 0.95231 0.94416 0.91427 0.99856 0.99785 0.93195 0.92901 0.96456 0.83681 0.93361 0.91269 0.91161 0.91868 0.91470 0.91284 0.83107 0.82200 0.81022 0.82676 0.91564 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 7.89 71.98 0.57 -3.80 16 2 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.45 7.65 25.60 0.20 -28.26 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.59 13.29 21.44 0.28 -57.31 16 9 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 C 0.09 2.90 4.45 86.30 0.38 3.29 16 14 N -0.68 -17.88 5.46 -491.57 -2.68 -20.57 16 15 C 0.09 1.91 2.47 44.91 0.11 2.02 16 16 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 17 C -0.15 -2.74 5.17 30.60 0.16 -2.58 16 18 C -0.11 -1.65 5.92 30.60 0.18 -1.46 16 19 C -0.10 -1.39 5.02 30.59 0.15 -1.24 16 20 C -0.04 -0.51 2.38 -11.54 -0.03 -0.54 16 21 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 22 C -0.12 -1.98 4.79 -19.77 -0.09 -2.07 16 23 C -0.08 -1.13 9.81 22.47 0.22 -0.91 16 24 C -0.17 -2.08 10.11 22.36 0.23 -1.86 16 25 C 0.07 1.15 11.18 84.69 0.95 2.10 16 26 N -0.51 -10.56 10.36 -195.84 -2.03 -12.59 16 27 C 0.09 1.64 9.90 84.67 0.84 2.47 16 28 C -0.09 -1.58 4.62 30.59 0.14 -1.44 16 29 H 0.07 1.96 6.57 -2.38 -0.02 1.94 16 30 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 34 H 0.07 2.24 7.60 -2.39 -0.02 2.22 16 35 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 39 H 0.02 0.60 7.44 -2.39 -0.02 0.58 16 40 H 0.34 8.50 6.51 -89.69 -0.58 7.91 16 41 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 42 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.89 7.43 -2.39 -0.02 0.87 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.15 1.44 8.00 -2.91 -0.02 1.41 16 48 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 49 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 50 H 0.16 2.54 7.13 -2.91 -0.02 2.52 16 51 H 0.07 1.19 7.40 -2.39 -0.02 1.17 16 52 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.22 395.42 3.02 -63.20 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.29 Total: 18.17 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 5.13 Total: -37.68 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -4.43 Total: -90.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -66.22 3.02 -63.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367896478.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.051 kcal (2) G-P(sol) polarization free energy of solvation -66.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds