Wall clock time and date at job start Tue Mar 31 2020 11:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47639 * 2 1 4 4 C 1.53008 * 109.47135 * 239.99982 * 2 1 3 5 5 C 1.50698 * 109.46890 * 60.00562 * 4 2 1 6 6 H 1.08000 * 120.00256 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99998 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47180 * 119.99649 * 9 7 5 12 12 H 1.48495 * 109.47415 * 239.99726 * 9 7 5 13 13 C 1.53001 * 109.46947 * 120.00271 * 2 1 3 14 14 N 1.46899 * 109.46816 * 299.99522 * 13 2 1 15 15 C 1.46908 * 110.99674 * 179.97438 * 14 13 2 16 16 H 1.08996 * 109.47483 * 325.00496 * 15 14 13 17 17 C 1.53003 * 109.46669 * 85.00197 * 15 14 13 18 18 C 1.53004 * 109.46587 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47239 * 300.00035 * 18 17 15 20 20 C 1.52998 * 109.47411 * 60.00093 * 19 18 17 21 21 H 1.09000 * 109.46822 * 59.99351 * 20 19 18 22 22 C 1.50697 * 109.47254 * 180.02562 * 20 19 18 23 23 C 1.38676 * 120.41398 * 239.97438 * 22 20 19 24 24 C 1.38629 * 118.41631 * 179.75512 * 23 22 20 25 25 C 1.38230 * 119.16240 * 0.55670 * 24 23 22 26 26 N 1.31858 * 120.76104 * 359.43175 * 25 24 23 27 27 C 1.31887 * 121.72468 * 0.27879 * 26 25 24 28 28 C 1.52998 * 109.47130 * 205.00216 * 15 14 13 29 29 H 1.09006 * 109.46898 * 300.00260 * 1 2 3 30 30 H 1.09005 * 109.46814 * 59.99599 * 1 2 3 31 31 H 1.08992 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47302 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46948 * 300.00576 * 3 2 1 34 34 H 1.09004 * 109.46694 * 60.00022 * 3 2 1 35 35 H 1.09000 * 109.47165 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.46702 * 300.00346 * 4 2 1 37 37 H 0.97006 * 119.99822 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47057 * 180.02562 * 13 2 1 39 39 H 1.08992 * 109.47210 * 59.99888 * 13 2 1 40 40 H 1.00898 * 111.00551 * 303.95497 * 14 13 2 41 41 H 1.09000 * 109.47130 * 60.00684 * 17 15 14 42 42 H 1.08998 * 109.47634 * 299.99609 * 17 15 14 43 43 H 1.09000 * 109.46718 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47458 * 60.00365 * 18 17 15 45 45 H 1.09006 * 109.46977 * 299.99957 * 19 18 17 46 46 H 1.08998 * 109.47242 * 180.02562 * 19 18 17 47 47 H 1.07995 * 120.79706 * 0.02562 * 23 22 20 48 48 H 1.07999 * 120.42389 * 180.28670 * 24 23 22 49 49 H 1.08002 * 119.62315 * 179.71361 * 25 24 23 50 50 H 1.07999 * 119.61429 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.47065 * 59.99982 * 28 15 14 52 52 H 1.09006 * 109.46977 * 299.99923 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2473 0.3981 -5.2572 10 1 0.4219 1.5647 -4.8530 11 1 2.4021 0.8647 -6.0660 12 1 0.4221 -0.5353 -6.0651 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0208 -0.6953 3.6703 16 1 2.0598 -1.7720 3.5048 17 6 3.4181 -0.1829 4.0249 18 6 3.9079 -0.8767 5.2976 19 6 2.9457 -0.5714 6.4474 20 6 1.5484 -1.0838 6.0928 21 1 1.5873 -2.1605 5.9276 22 6 0.6006 -0.7826 7.2250 23 6 -0.0622 -1.8109 7.8781 24 6 -0.9206 -1.4871 8.9174 25 6 -1.0952 -0.1589 9.2579 26 7 -0.4483 0.7930 8.6144 27 6 0.3804 0.5215 7.6249 28 6 1.0587 -0.3907 4.8203 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7488 -1.2493 37 1 2.8607 -1.8828 -4.7337 38 1 3.1300 -0.7209 1.2495 39 1 1.6766 -1.7489 1.2492 40 1 1.8197 0.9435 2.4402 41 1 3.3791 0.8938 4.1905 42 1 4.1036 -0.3999 3.2057 43 1 4.9032 -0.5113 5.5505 44 1 3.9469 -1.9533 5.1326 45 1 2.9069 0.5053 6.6125 46 1 3.2949 -1.0653 7.3542 47 1 0.0902 -2.8396 7.5872 48 1 -1.4498 -2.2625 9.4514 49 1 -1.7659 0.1021 10.0633 50 1 0.8930 1.3279 7.1216 51 1 0.0633 -0.7557 4.5676 52 1 1.0198 0.6860 4.9859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367896486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:37 Heat of formation + Delta-G solvation = -5.636992 kcal Electronic energy + Delta-G solvation = -26546.215243 eV Core-core repulsion = 23122.602841 eV Total energy + Delta-G solvation = -3423.612402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72032 -38.98478 -37.16038 -34.38646 -32.95015 -32.23621 -31.97297 -29.61861 -28.61976 -26.83362 -26.30966 -25.01330 -24.22743 -23.77384 -22.58227 -22.00273 -21.04375 -19.96854 -17.84485 -17.42010 -16.48459 -16.22558 -16.06097 -15.04486 -14.87806 -14.73576 -14.35822 -14.22788 -14.17920 -13.92140 -13.71783 -13.32733 -13.14265 -12.99862 -12.79503 -12.57792 -12.29701 -11.98102 -11.92450 -11.80103 -11.41021 -11.23134 -11.02367 -10.91375 -10.82266 -10.72893 -10.56115 -10.46446 -10.41585 -10.22799 -10.08234 -10.02416 -9.66721 -9.66121 -9.18670 -8.98338 -8.79555 -8.31178 -8.00863 -5.95542 -3.95363 0.84245 1.01698 3.32864 3.40770 3.44378 3.53853 4.08029 4.29897 4.42281 4.46295 4.51148 4.62547 4.71845 4.79739 4.81755 4.98056 5.06510 5.11676 5.28658 5.33501 5.36224 5.40304 5.40827 5.50574 5.54053 5.68875 5.74003 5.79311 5.80920 5.85639 5.89937 5.97930 6.00729 6.03060 6.10991 6.22552 6.28532 6.34277 6.36557 6.44191 6.53549 6.68426 6.81826 6.85047 7.23019 7.26565 7.28547 7.44668 7.70180 7.71806 7.74128 7.87330 8.05090 8.49778 9.10329 9.67430 11.16153 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002296 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.066257 B =12191.000061 C =12643.515680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.682 5.682 15 C 0.088 3.912 16 H 0.074 0.926 17 C -0.151 4.151 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.044 4.044 21 H 0.080 0.920 22 C -0.120 4.120 23 C -0.075 4.075 24 C -0.171 4.171 25 C 0.087 3.913 26 N -0.484 5.484 27 C 0.104 3.896 28 C -0.096 4.096 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.012 0.988 36 H 0.014 0.986 37 H 0.258 0.742 38 H 0.023 0.977 39 H 0.064 0.936 40 H 0.338 0.662 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.153 0.847 50 H 0.153 0.847 51 H 0.070 0.930 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 0.185 26.051 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.313 5.313 15 C -0.022 4.022 16 H 0.093 0.907 17 C -0.190 4.190 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.064 4.064 21 H 0.098 0.902 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.191 4.191 25 C -0.069 4.069 26 N -0.192 5.192 27 C -0.053 4.053 28 C -0.134 4.134 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.158 0.842 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.170 0.830 50 H 0.170 0.830 51 H 0.089 0.911 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.457 0.633 26.150 26.272 hybrid contribution 0.832 -0.370 -1.207 1.512 sum -1.625 0.263 24.943 24.997 Atomic orbital electron populations 1.21595 0.95063 1.00508 1.00142 1.20623 0.95804 0.94964 0.94458 1.21767 0.99635 0.96806 1.00395 1.19129 0.95856 0.95189 0.90255 1.21280 1.30574 1.11865 0.90604 0.92252 1.25023 0.95455 0.95142 0.99079 1.69979 1.37416 1.23249 1.23139 0.86611 0.78587 0.79745 0.83505 1.19774 1.21213 1.21174 1.22116 0.96339 0.97922 0.89345 1.60637 1.63275 1.06359 1.00990 1.21537 0.91387 0.98976 0.90299 0.90741 1.22313 0.98393 1.00484 0.97787 1.21462 0.98351 1.00787 0.94633 1.21605 0.93721 1.01274 0.98100 1.20148 0.92917 1.01136 0.92154 0.90180 1.20923 0.98639 0.94498 0.98118 1.21555 0.94570 0.99626 0.94353 1.22142 1.00071 0.98174 0.98742 1.22749 0.97069 0.88955 0.98163 1.67702 1.06824 1.37469 1.07247 1.22635 0.94395 0.95324 0.92934 1.21547 0.99424 1.00410 0.92034 0.93887 0.92767 0.94252 0.94156 0.91774 0.94813 0.96962 0.96730 0.93255 0.95896 0.91753 0.84217 0.91875 0.91791 0.91978 0.91882 0.91700 0.92082 0.84913 0.84918 0.82994 0.82959 0.91115 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.15 0.30 -1.94 16 2 C -0.06 -1.14 0.60 -154.51 -0.09 -1.24 16 3 C -0.13 -2.37 7.89 37.16 0.29 -2.08 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.50 -13.81 7.65 -34.44 -0.26 -14.07 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.07 1.20 4.45 -3.82 -0.02 1.18 16 14 N -0.68 -9.39 5.46 -106.72 -0.58 -9.97 16 15 C 0.09 0.99 2.47 -67.71 -0.17 0.82 16 16 H 0.07 0.90 7.80 -51.93 -0.40 0.49 16 17 C -0.15 -1.51 5.17 -26.73 -0.14 -1.65 16 18 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 19 C -0.11 -0.84 5.02 -26.73 -0.13 -0.98 16 20 C -0.04 -0.36 2.38 -91.80 -0.22 -0.58 16 21 H 0.08 0.64 7.93 -51.93 -0.41 0.23 16 22 C -0.12 -1.05 4.79 -104.48 -0.50 -1.55 16 23 C -0.08 -0.60 9.81 -39.28 -0.39 -0.98 16 24 C -0.17 -1.27 10.11 -39.44 -0.40 -1.66 16 25 C 0.09 0.75 11.18 -17.54 -0.20 0.55 16 26 N -0.48 -5.20 10.36 -13.25 -0.14 -5.34 16 27 C 0.10 1.01 9.90 -17.55 -0.17 0.84 16 28 C -0.10 -0.95 4.62 -26.76 -0.12 -1.07 16 29 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 30 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 34 H 0.03 0.53 6.57 -51.93 -0.34 0.18 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.02 0.39 7.44 -51.92 -0.39 0.00 16 39 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 40 H 0.34 4.54 6.51 -39.29 -0.26 4.28 16 41 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.50 7.41 -51.93 -0.38 0.11 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.13 0.81 8.00 -52.49 -0.42 0.39 16 48 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.15 1.31 7.12 -52.49 -0.37 0.94 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.06 0.63 7.41 -51.93 -0.38 0.24 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -30.18 395.41 -10.96 -41.15 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -9.33 Total: 1.09 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.58 Total: -23.38 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.02 Total: -41.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.18 -10.96 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367896486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.508 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds