Wall clock time and date at job start Tue Mar 31 2020 11:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47639 * 2 1 4 4 C 1.53008 * 109.47135 * 239.99982 * 2 1 3 5 5 C 1.50698 * 109.46890 * 60.00562 * 4 2 1 6 6 H 1.08000 * 120.00256 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99858 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99998 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47249 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47180 * 119.99649 * 9 7 5 12 12 H 1.48495 * 109.47415 * 239.99726 * 9 7 5 13 13 C 1.53001 * 109.46947 * 120.00271 * 2 1 3 14 14 N 1.46899 * 109.46816 * 299.99522 * 13 2 1 15 15 C 1.46908 * 110.99674 * 179.97438 * 14 13 2 16 16 H 1.08996 * 109.47483 * 325.00496 * 15 14 13 17 17 C 1.53003 * 109.46669 * 85.00197 * 15 14 13 18 18 C 1.53004 * 109.46587 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47239 * 300.00035 * 18 17 15 20 20 C 1.52998 * 109.47411 * 60.00093 * 19 18 17 21 21 H 1.09000 * 109.46822 * 59.99351 * 20 19 18 22 22 C 1.50697 * 109.47254 * 180.02562 * 20 19 18 23 23 C 1.38676 * 120.41398 * 239.97438 * 22 20 19 24 24 C 1.38629 * 118.41631 * 179.75512 * 23 22 20 25 25 C 1.38230 * 119.16240 * 0.55670 * 24 23 22 26 26 N 1.31858 * 120.76104 * 359.43175 * 25 24 23 27 27 C 1.31887 * 121.72468 * 0.27879 * 26 25 24 28 28 C 1.52998 * 109.47130 * 205.00216 * 15 14 13 29 29 H 1.09006 * 109.46898 * 300.00260 * 1 2 3 30 30 H 1.09005 * 109.46814 * 59.99599 * 1 2 3 31 31 H 1.08992 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47302 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46948 * 300.00576 * 3 2 1 34 34 H 1.09004 * 109.46694 * 60.00022 * 3 2 1 35 35 H 1.09000 * 109.47165 * 179.97438 * 4 2 1 36 36 H 1.08992 * 109.46702 * 300.00346 * 4 2 1 37 37 H 0.97006 * 119.99822 * 180.02562 * 8 7 5 38 38 H 1.09007 * 109.47057 * 180.02562 * 13 2 1 39 39 H 1.08992 * 109.47210 * 59.99888 * 13 2 1 40 40 H 1.00898 * 111.00551 * 303.95497 * 14 13 2 41 41 H 1.09000 * 109.47130 * 60.00684 * 17 15 14 42 42 H 1.08998 * 109.47634 * 299.99609 * 17 15 14 43 43 H 1.09000 * 109.46718 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.47458 * 60.00365 * 18 17 15 45 45 H 1.09006 * 109.46977 * 299.99957 * 19 18 17 46 46 H 1.08998 * 109.47242 * 180.02562 * 19 18 17 47 47 H 1.07995 * 120.79706 * 0.02562 * 23 22 20 48 48 H 1.07999 * 120.42389 * 180.28670 * 24 23 22 49 49 H 1.08002 * 119.62315 * 179.71361 * 25 24 23 50 50 H 1.07999 * 119.61429 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.47065 * 59.99982 * 28 15 14 52 52 H 1.09006 * 109.46977 * 299.99923 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2473 0.3981 -5.2572 10 1 0.4219 1.5647 -4.8530 11 1 2.4021 0.8647 -6.0660 12 1 0.4221 -0.5353 -6.0651 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0208 -0.6953 3.6703 16 1 2.0598 -1.7720 3.5048 17 6 3.4181 -0.1829 4.0249 18 6 3.9079 -0.8767 5.2976 19 6 2.9457 -0.5714 6.4474 20 6 1.5484 -1.0838 6.0928 21 1 1.5873 -2.1605 5.9276 22 6 0.6006 -0.7826 7.2250 23 6 -0.0622 -1.8109 7.8781 24 6 -0.9206 -1.4871 8.9174 25 6 -1.0952 -0.1589 9.2579 26 7 -0.4483 0.7930 8.6144 27 6 0.3804 0.5215 7.6249 28 6 1.0587 -0.3907 4.8203 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7488 -1.2493 37 1 2.8607 -1.8828 -4.7337 38 1 3.1300 -0.7209 1.2495 39 1 1.6766 -1.7489 1.2492 40 1 1.8197 0.9435 2.4402 41 1 3.3791 0.8938 4.1905 42 1 4.1036 -0.3999 3.2057 43 1 4.9032 -0.5113 5.5505 44 1 3.9469 -1.9533 5.1326 45 1 2.9069 0.5053 6.6125 46 1 3.2949 -1.0653 7.3542 47 1 0.0902 -2.8396 7.5872 48 1 -1.4498 -2.2625 9.4514 49 1 -1.7659 0.1021 10.0633 50 1 0.8930 1.3279 7.1216 51 1 0.0633 -0.7557 4.5676 52 1 1.0198 0.6860 4.9859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367896486.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:36 Heat of formation + Delta-G solvation = -21.135649 kcal Electronic energy + Delta-G solvation = -26546.887315 eV Core-core repulsion = 23122.602841 eV Total energy + Delta-G solvation = -3424.284474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37702 -39.93008 -38.53280 -35.59588 -34.33321 -33.46800 -32.73655 -30.52440 -29.60508 -28.67394 -27.88311 -26.50615 -24.95293 -24.45104 -24.25193 -22.82789 -21.91054 -20.75458 -19.43368 -18.32886 -18.02912 -17.13825 -16.97516 -16.52387 -16.08962 -15.65666 -15.53237 -15.33171 -14.98099 -14.85440 -14.70287 -14.46094 -14.37674 -13.93137 -13.91253 -13.75778 -13.69619 -13.32351 -13.23362 -12.82036 -12.67191 -12.59435 -12.48200 -12.27116 -12.18624 -12.10662 -11.99732 -11.86414 -11.58282 -11.43436 -11.29349 -11.16839 -10.84512 -10.70655 -10.62170 -10.51076 -10.30980 -9.79891 -9.16353 -8.14091 -6.20760 0.22777 0.40342 1.39676 1.40853 1.52957 2.43562 2.89867 3.19823 3.24651 3.54189 3.75227 3.77018 3.99900 4.07486 4.11611 4.14251 4.17172 4.24017 4.26769 4.37700 4.41665 4.44303 4.56473 4.59472 4.64188 4.71697 4.74223 4.81414 4.82776 4.94501 4.98041 5.05630 5.09154 5.11288 5.17585 5.20232 5.22917 5.24040 5.27468 5.32436 5.40443 5.46250 5.52840 5.54820 5.57424 5.59536 5.67999 5.84790 5.88717 5.93620 6.19065 6.38684 6.60981 6.94646 7.08685 7.46455 8.98395 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002296 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.066257 B =12191.000061 C =12643.515680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.055 4.055 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.086 3.914 14 N -0.680 5.680 15 C 0.090 3.910 16 H 0.066 0.934 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.104 4.104 20 C -0.035 4.035 21 H 0.084 0.916 22 C -0.125 4.125 23 C -0.083 4.083 24 C -0.168 4.168 25 C 0.074 3.926 26 N -0.515 5.515 27 C 0.089 3.911 28 C -0.087 4.087 29 H 0.067 0.933 30 H 0.037 0.963 31 H 0.028 0.972 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.067 0.933 35 H -0.016 1.016 36 H -0.017 1.017 37 H 0.259 0.741 38 H 0.017 0.983 39 H 0.052 0.948 40 H 0.343 0.657 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.151 0.849 48 H 0.160 0.840 49 H 0.173 0.827 50 H 0.156 0.844 51 H 0.057 0.943 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 0.903 27.741 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.043 4.043 14 N -0.311 5.311 15 C -0.020 4.020 16 H 0.084 0.916 17 C -0.185 4.185 18 C -0.148 4.148 19 C -0.141 4.141 20 C -0.055 4.055 21 H 0.103 0.897 22 C -0.127 4.127 23 C -0.109 4.109 24 C -0.188 4.188 25 C -0.082 4.082 26 N -0.224 5.224 27 C -0.068 4.068 28 C -0.125 4.125 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.002 0.998 36 H 0.001 0.999 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.071 0.929 40 H 0.163 0.837 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.169 0.831 48 H 0.178 0.822 49 H 0.190 0.810 50 H 0.173 0.827 51 H 0.076 0.924 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.215 1.366 27.859 28.077 hybrid contribution 1.052 -0.638 -1.666 2.071 sum -2.163 0.727 26.193 26.292 Atomic orbital electron populations 1.21496 0.94462 0.99969 1.00435 1.20488 0.96149 0.95584 0.93280 1.21678 0.99428 0.95660 1.01125 1.19014 0.93939 0.94062 0.92794 1.21646 1.30022 1.11844 0.91454 0.91671 1.25927 0.95786 0.95949 1.02594 1.70116 1.38939 1.24945 1.23930 0.85525 0.78118 0.78802 0.79391 1.18507 1.20796 1.20877 1.21780 0.95798 0.97187 0.89539 1.60580 1.63296 1.06520 1.00696 1.21573 0.92595 0.98289 0.89554 0.91589 1.22237 0.97086 1.00993 0.98177 1.21432 0.98902 1.00606 0.93883 1.21559 0.93052 1.01514 0.98008 1.20052 0.93117 1.01153 0.91145 0.89718 1.20940 0.98943 0.94454 0.98328 1.21884 0.94279 1.00380 0.94325 1.22453 0.99548 0.98395 0.98365 1.23192 0.97140 0.89358 0.98520 1.67684 1.07809 1.38758 1.08127 1.22754 0.94805 0.95960 0.93235 1.21432 0.98222 1.00697 0.92141 0.91428 0.94420 0.95229 0.94457 0.93594 0.91424 0.99783 0.99855 0.93198 0.96459 0.92898 0.83670 0.91277 0.93353 0.91159 0.91868 0.91465 0.91275 0.83106 0.82200 0.81023 0.82675 0.92449 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 2 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.12 -4.37 7.89 71.98 0.57 -3.80 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -28.46 7.65 25.60 0.20 -28.26 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.48 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.12 16 8 N -0.94 -57.59 13.29 21.45 0.28 -57.30 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.09 2.90 4.45 86.30 0.38 3.29 16 14 N -0.68 -17.89 5.46 -491.55 -2.68 -20.58 16 15 C 0.09 1.91 2.47 44.91 0.11 2.02 16 16 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 17 C -0.15 -2.74 5.17 30.60 0.16 -2.58 16 18 C -0.11 -1.64 5.92 30.60 0.18 -1.46 16 19 C -0.10 -1.39 5.02 30.59 0.15 -1.24 16 20 C -0.04 -0.51 2.38 -11.56 -0.03 -0.54 16 21 H 0.08 1.19 7.93 -2.39 -0.02 1.17 16 22 C -0.12 -1.98 4.79 -19.78 -0.09 -2.07 16 23 C -0.08 -1.13 9.81 22.47 0.22 -0.91 16 24 C -0.17 -2.08 10.11 22.36 0.23 -1.86 16 25 C 0.07 1.15 11.18 84.69 0.95 2.10 16 26 N -0.51 -10.56 10.36 -195.84 -2.03 -12.59 16 27 C 0.09 1.64 9.90 84.67 0.84 2.47 16 28 C -0.09 -1.58 4.62 30.58 0.14 -1.44 16 29 H 0.07 2.24 7.60 -2.38 -0.02 2.22 16 30 H 0.04 1.54 6.62 -2.38 -0.02 1.52 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.81 6.62 -2.39 -0.02 1.79 16 34 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 38 H 0.02 0.60 7.44 -2.38 -0.02 0.58 16 39 H 0.05 1.90 8.05 -2.39 -0.02 1.88 16 40 H 0.34 8.50 6.51 -89.70 -0.58 7.92 16 41 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 42 H 0.05 1.07 7.45 -2.39 -0.02 1.05 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.89 7.41 -2.38 -0.02 0.87 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.15 1.44 8.00 -2.91 -0.02 1.41 16 48 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 49 H 0.17 1.74 8.06 -2.91 -0.02 1.71 16 50 H 0.16 2.54 7.12 -2.91 -0.02 2.52 16 51 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.07 1.19 7.41 -2.38 -0.02 1.17 16 Total: -1.00 -66.23 395.41 3.02 -63.20 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.29 Total: 18.17 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 5.13 Total: -37.68 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -4.43 Total: -90.47 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.23 3.02 -63.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367896486.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.067 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds