Wall clock time and date at job start Tue Mar 31 2020 11:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47412 * 2 1 4 4 H 1.09006 * 109.47082 * 303.96937 * 3 2 1 5 5 C 1.50698 * 109.47487 * 183.96616 * 3 2 1 6 6 H 1.07999 * 120.00545 * 244.07811 * 5 3 2 7 7 C 1.37885 * 119.99797 * 64.07817 * 5 3 2 8 8 N 1.31512 * 120.00055 * 192.50657 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 12.50403 * 7 5 3 10 10 H 1.48504 * 109.47028 * 95.12806 * 9 7 5 11 11 H 1.48500 * 109.46756 * 215.12591 * 9 7 5 12 12 H 1.48502 * 109.47428 * 335.12560 * 9 7 5 13 13 N 1.46901 * 109.47153 * 63.96800 * 3 2 1 14 14 C 1.46899 * 110.99959 * 169.36345 * 13 3 2 15 15 C 1.46895 * 110.99902 * 45.40525 * 13 3 2 16 16 H 1.08995 * 109.50799 * 306.65121 * 15 13 3 17 17 C 1.53123 * 109.50183 * 66.77526 * 15 13 3 18 18 C 1.53113 * 109.15927 * 177.59337 * 17 15 13 19 19 C 1.53035 * 109.28043 * 302.34178 * 18 17 15 20 20 N 1.46846 * 109.52397 * 59.17966 * 19 18 17 21 21 C 1.46897 * 111.00205 * 174.15943 * 20 19 18 22 22 C 1.50704 * 109.47231 * 314.21502 * 21 20 19 23 23 C 1.38237 * 119.99768 * 269.72484 * 22 21 20 24 24 C 1.38237 * 119.99720 * 179.78957 * 23 22 21 25 25 C 1.38234 * 120.00195 * 0.43708 * 24 23 22 26 26 C 1.38234 * 119.99761 * 359.81732 * 25 24 23 27 27 C 1.38236 * 120.00466 * 359.97438 * 26 25 24 28 28 C 1.46847 * 111.19556 * 298.26230 * 20 19 18 29 29 H 1.08996 * 109.47547 * 185.13134 * 1 2 3 30 30 H 1.09009 * 109.46806 * 305.12998 * 1 2 3 31 31 H 1.09000 * 109.47200 * 65.12320 * 1 2 3 32 32 H 1.09000 * 109.47073 * 240.00134 * 2 1 3 33 33 H 1.08994 * 109.47310 * 120.00004 * 2 1 3 34 34 H 0.96996 * 119.99864 * 180.02562 * 8 7 5 35 35 H 1.08991 * 109.47187 * 299.73117 * 14 13 3 36 36 H 1.09001 * 109.47122 * 59.73268 * 14 13 3 37 37 H 1.09007 * 109.46806 * 179.72637 * 14 13 3 38 38 H 1.09000 * 109.52002 * 297.49935 * 17 15 13 39 39 H 1.09002 * 109.52634 * 57.68440 * 17 15 13 40 40 H 1.09010 * 109.49927 * 182.40126 * 18 17 15 41 41 H 1.08995 * 109.53857 * 62.30781 * 18 17 15 42 42 H 1.09003 * 109.46151 * 299.16571 * 19 18 17 43 43 H 1.08998 * 109.46240 * 179.20175 * 19 18 17 44 44 H 1.09000 * 109.46736 * 74.21235 * 21 20 19 45 45 H 1.09001 * 109.47230 * 194.20996 * 21 20 19 46 46 H 1.08006 * 119.99854 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.99582 * 180.27664 * 24 23 22 48 48 H 1.07992 * 120.00173 * 179.83408 * 25 24 23 49 49 H 1.08004 * 119.99924 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00868 * 180.02562 * 27 26 25 51 51 H 1.08996 * 109.46192 * 301.71551 * 28 20 19 52 52 H 1.09002 * 109.45629 * 181.75591 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9765 -0.8523 5 6 3.5438 1.4436 -0.0983 6 1 4.1379 1.8334 0.7151 7 6 4.1613 0.9470 -1.2267 8 7 5.4563 0.7181 -1.2208 9 14 3.1583 0.5994 -2.7638 10 1 3.2280 1.7696 -3.6755 11 1 3.7057 -0.5974 -3.4517 12 1 1.7440 0.3496 -2.3861 13 7 1.6302 2.1068 1.2445 14 6 2.3074 3.4013 1.3978 15 6 1.8752 1.2434 2.4074 16 1 1.4028 0.2743 2.2472 17 6 3.3831 1.0534 2.5944 18 6 3.6313 0.2024 3.8428 19 6 2.9943 0.8857 5.0549 20 7 1.5522 1.0439 4.8274 21 6 0.8848 1.5701 6.0256 22 6 1.3696 0.8214 7.2403 23 6 0.7073 -0.3170 7.6604 24 6 1.1546 -1.0062 8.7721 25 6 2.2587 -0.5520 9.4690 26 6 2.9177 0.5893 9.0519 27 6 2.4731 1.2762 7.9378 28 6 1.2891 1.8966 3.6611 29 1 -0.3634 -1.0235 0.0919 30 1 -0.3633 0.5914 0.8406 31 1 -0.3633 0.4323 -0.9323 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8907 0.3692 -2.0147 35 1 3.3857 3.2460 1.4280 36 1 2.0564 4.0448 0.5546 37 1 1.9822 3.8739 2.3248 38 1 3.7976 0.5491 1.7214 39 1 3.8606 2.0257 2.7154 40 1 4.7043 0.0993 4.0054 41 1 3.1876 -0.7837 3.7060 42 1 3.4488 1.8658 5.1999 43 1 3.1571 0.2752 5.9431 44 1 1.1170 2.6294 6.1351 45 1 -0.1932 1.4428 5.9265 46 1 -0.1578 -0.6695 7.1183 47 1 0.6398 -1.8981 9.0977 48 1 2.6065 -1.0889 10.3390 49 1 3.7806 0.9439 9.5962 50 1 2.9882 2.1676 7.6116 51 1 1.7515 2.8719 3.8126 52 1 0.2133 2.0202 3.5371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388426274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:42 Heat of formation + Delta-G solvation = 53.733188 kcal Electronic energy + Delta-G solvation = -28130.228394 eV Core-core repulsion = 24709.190476 eV Total energy + Delta-G solvation = -3421.037918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97886 -38.97736 -36.76984 -33.42014 -32.41196 -31.75814 -31.03365 -30.90932 -29.00570 -27.12165 -26.10683 -25.06726 -22.83685 -22.71099 -22.37336 -21.76802 -20.85689 -19.54817 -18.19505 -17.08613 -16.76103 -15.71433 -15.65065 -15.34960 -15.20076 -14.46483 -14.25339 -14.03672 -13.74317 -13.48718 -13.43735 -13.18955 -13.05100 -12.59828 -12.54121 -12.28268 -12.16507 -11.93636 -11.76379 -11.67435 -11.54521 -11.12803 -11.02834 -10.96633 -10.84596 -10.74823 -10.64152 -10.32242 -10.04889 -9.93230 -9.70742 -9.49213 -9.34013 -9.00227 -8.86046 -8.82918 -8.39481 -8.01610 -7.06644 -6.11824 -4.06760 1.22403 1.30893 3.27819 3.38481 3.42766 3.61284 4.22312 4.41645 4.66049 4.75209 4.89205 4.99828 5.11748 5.18091 5.24222 5.34848 5.40410 5.48378 5.51614 5.58256 5.64281 5.82684 5.87565 5.91005 5.95190 5.99108 6.03747 6.12679 6.13675 6.22838 6.28467 6.31465 6.34491 6.38069 6.40318 6.50688 6.54364 6.56958 6.72094 6.77502 6.79365 6.83113 6.88998 6.95782 7.08141 7.20580 7.29620 7.35495 7.37839 7.50623 7.64700 8.16581 8.23258 8.46779 8.92929 9.53999 10.99017 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.003333 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.324317 B = 8398.268316 C = 8673.324616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.185 3.815 4 H 0.034 0.966 5 C -0.553 4.553 6 H 0.094 0.906 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.858 3.142 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.246 1.246 13 N -0.527 5.527 14 C 0.028 3.972 15 C 0.094 3.906 16 H 0.090 0.910 17 C -0.166 4.166 18 C -0.114 4.114 19 C 0.055 3.945 20 N -0.529 5.529 21 C 0.093 3.907 22 C -0.075 4.075 23 C -0.100 4.100 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.113 4.113 28 C 0.064 3.936 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.262 0.738 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.122 0.878 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.082 0.918 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.030 0.970 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -0.448 17.455 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.077 3.923 4 H 0.052 0.948 5 C -0.590 4.590 6 H 0.111 0.889 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.685 3.315 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.169 1.169 13 N -0.250 5.250 14 C -0.120 4.120 15 C -0.015 4.015 16 H 0.107 0.893 17 C -0.204 4.204 18 C -0.153 4.153 19 C -0.073 4.073 20 N -0.254 5.254 21 C -0.034 4.034 22 C -0.076 4.076 23 C -0.118 4.118 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.132 4.132 28 C -0.064 4.064 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.048 0.952 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.663 -0.865 17.186 19.265 hybrid contribution 1.016 0.477 -0.733 1.340 sum -7.647 -0.388 16.452 18.147 Atomic orbital electron populations 1.21773 0.97786 0.99425 1.01295 1.22134 0.93672 0.99290 1.01258 1.19611 0.94370 0.90293 0.88000 0.94834 1.21932 0.90759 1.41913 1.04441 0.88855 1.24950 0.94572 0.94391 0.98549 1.69962 1.09851 1.44055 1.29106 0.87312 0.82509 0.77770 0.83890 1.21046 1.21606 1.16947 1.62538 1.56395 1.03502 1.02551 1.22272 0.98700 0.91721 0.99320 1.21587 0.94158 0.97126 0.88659 0.89252 1.22910 0.97914 1.00105 0.99470 1.21594 0.99087 0.99789 0.94798 1.22232 0.87107 0.98820 0.99127 1.61985 1.10989 1.49654 1.02749 1.21071 0.99351 0.95551 0.87429 1.19818 0.95612 0.96142 0.96013 1.21056 1.00030 0.94572 0.96178 1.21150 0.97084 0.99850 0.95957 1.21124 0.96250 0.96827 1.00055 1.21100 0.99982 0.95955 0.97033 1.21103 0.96383 1.00158 0.95550 1.22196 1.00680 0.93533 0.89956 0.94874 0.92108 0.94132 0.92749 0.92165 0.92790 0.93621 0.92825 0.94039 0.86006 0.93164 0.92413 0.91845 0.95764 0.90982 0.94333 0.89999 0.85834 0.86203 0.86370 0.86265 0.86423 0.95179 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.57 37.16 0.36 -2.27 16 2 C -0.13 -2.63 4.11 -26.73 -0.11 -2.74 16 3 C 0.18 4.11 1.55 -68.87 -0.11 4.01 16 4 H 0.03 0.80 6.91 -51.93 -0.36 0.44 16 5 C -0.55 -14.09 5.86 -34.44 -0.20 -14.30 16 6 H 0.09 2.54 4.16 -52.49 -0.22 2.32 16 7 C 0.08 2.13 5.37 -17.82 -0.10 2.03 16 8 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 9 Si 0.86 20.56 25.73 -169.99 -4.37 16.18 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.25 -5.54 5.28 56.52 0.30 -5.24 16 13 N -0.53 -10.33 4.26 -228.20 -0.97 -11.30 16 14 C 0.03 0.54 8.37 60.06 0.50 1.04 16 15 C 0.09 1.69 1.62 -67.63 -0.11 1.58 16 16 H 0.09 1.71 5.25 -51.93 -0.27 1.44 16 17 C -0.17 -3.20 3.43 -26.61 -0.09 -3.29 16 18 C -0.11 -1.91 6.09 -26.65 -0.16 -2.07 16 19 C 0.05 0.80 4.58 -3.84 -0.02 0.79 16 20 N -0.53 -7.57 4.80 -236.12 -1.13 -8.70 16 21 C 0.09 1.12 5.43 -4.98 -0.03 1.09 16 22 C -0.08 -0.86 4.12 -104.62 -0.43 -1.30 16 23 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.11 -1.23 7.79 -39.58 -0.31 -1.54 16 28 C 0.06 1.00 4.58 -3.83 -0.02 0.98 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 1.07 7.16 -51.92 -0.37 0.70 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 1.21 4.60 -51.93 -0.24 0.97 16 33 H 0.06 1.27 5.63 -51.93 -0.29 0.97 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.05 0.96 4.63 -51.93 -0.24 0.72 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.04 0.69 6.17 -51.92 -0.32 0.37 16 38 H 0.12 2.85 4.88 -51.93 -0.25 2.59 16 39 H 0.05 1.01 6.13 -51.93 -0.32 0.70 16 40 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 1.03 5.64 -51.93 -0.29 0.73 16 44 H 0.04 0.45 8.02 -51.93 -0.42 0.04 16 45 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 46 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 50 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 51 H 0.03 0.48 6.34 -51.93 -0.33 0.15 16 52 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -27.46 369.74 -11.19 -38.65 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.66 Total: 7.02 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.40 Total: -22.20 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -1.33 Total: -45.23 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.37 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.46 -11.19 -38.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388426274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.378 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds