Wall clock time and date at job start Tue Mar 31 2020 11:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47412 * 2 1 4 4 H 1.09006 * 109.47082 * 303.96937 * 3 2 1 5 5 C 1.50698 * 109.47487 * 183.96616 * 3 2 1 6 6 H 1.07999 * 120.00545 * 244.07811 * 5 3 2 7 7 C 1.37885 * 119.99797 * 64.07817 * 5 3 2 8 8 N 1.31512 * 120.00055 * 192.50657 * 7 5 3 9 9 Si 1.86801 * 119.99808 * 12.50403 * 7 5 3 10 10 H 1.48504 * 109.47028 * 95.12806 * 9 7 5 11 11 H 1.48500 * 109.46756 * 215.12591 * 9 7 5 12 12 H 1.48502 * 109.47428 * 335.12560 * 9 7 5 13 13 N 1.46901 * 109.47153 * 63.96800 * 3 2 1 14 14 C 1.46899 * 110.99959 * 169.36345 * 13 3 2 15 15 C 1.46895 * 110.99902 * 45.40525 * 13 3 2 16 16 H 1.08995 * 109.50799 * 306.65121 * 15 13 3 17 17 C 1.53123 * 109.50183 * 66.77526 * 15 13 3 18 18 C 1.53113 * 109.15927 * 177.59337 * 17 15 13 19 19 C 1.53035 * 109.28043 * 302.34178 * 18 17 15 20 20 N 1.46846 * 109.52397 * 59.17966 * 19 18 17 21 21 C 1.46897 * 111.00205 * 174.15943 * 20 19 18 22 22 C 1.50704 * 109.47231 * 314.21502 * 21 20 19 23 23 C 1.38237 * 119.99768 * 269.72484 * 22 21 20 24 24 C 1.38237 * 119.99720 * 179.78957 * 23 22 21 25 25 C 1.38234 * 120.00195 * 0.43708 * 24 23 22 26 26 C 1.38234 * 119.99761 * 359.81732 * 25 24 23 27 27 C 1.38236 * 120.00466 * 359.97438 * 26 25 24 28 28 C 1.46847 * 111.19556 * 298.26230 * 20 19 18 29 29 H 1.08996 * 109.47547 * 185.13134 * 1 2 3 30 30 H 1.09009 * 109.46806 * 305.12998 * 1 2 3 31 31 H 1.09000 * 109.47200 * 65.12320 * 1 2 3 32 32 H 1.09000 * 109.47073 * 240.00134 * 2 1 3 33 33 H 1.08994 * 109.47310 * 120.00004 * 2 1 3 34 34 H 0.96996 * 119.99864 * 180.02562 * 8 7 5 35 35 H 1.08991 * 109.47187 * 299.73117 * 14 13 3 36 36 H 1.09001 * 109.47122 * 59.73268 * 14 13 3 37 37 H 1.09007 * 109.46806 * 179.72637 * 14 13 3 38 38 H 1.09000 * 109.52002 * 297.49935 * 17 15 13 39 39 H 1.09002 * 109.52634 * 57.68440 * 17 15 13 40 40 H 1.09010 * 109.49927 * 182.40126 * 18 17 15 41 41 H 1.08995 * 109.53857 * 62.30781 * 18 17 15 42 42 H 1.09003 * 109.46151 * 299.16571 * 19 18 17 43 43 H 1.08998 * 109.46240 * 179.20175 * 19 18 17 44 44 H 1.09000 * 109.46736 * 74.21235 * 21 20 19 45 45 H 1.09001 * 109.47230 * 194.20996 * 21 20 19 46 46 H 1.08006 * 119.99854 * 359.97438 * 23 22 21 47 47 H 1.08000 * 119.99582 * 180.27664 * 24 23 22 48 48 H 1.07992 * 120.00173 * 179.83408 * 25 24 23 49 49 H 1.08004 * 119.99924 * 180.02562 * 26 25 24 50 50 H 1.07998 * 120.00868 * 180.02562 * 27 26 25 51 51 H 1.08996 * 109.46192 * 301.71551 * 28 20 19 52 52 H 1.09002 * 109.45629 * 181.75591 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6198 1.9765 -0.8523 5 6 3.5438 1.4436 -0.0983 6 1 4.1379 1.8334 0.7151 7 6 4.1613 0.9470 -1.2267 8 7 5.4563 0.7181 -1.2208 9 14 3.1583 0.5994 -2.7638 10 1 3.2280 1.7696 -3.6755 11 1 3.7057 -0.5974 -3.4517 12 1 1.7440 0.3496 -2.3861 13 7 1.6302 2.1068 1.2445 14 6 2.3074 3.4013 1.3978 15 6 1.8752 1.2434 2.4074 16 1 1.4028 0.2743 2.2472 17 6 3.3831 1.0534 2.5944 18 6 3.6313 0.2024 3.8428 19 6 2.9943 0.8857 5.0549 20 7 1.5522 1.0439 4.8274 21 6 0.8848 1.5701 6.0256 22 6 1.3696 0.8214 7.2403 23 6 0.7073 -0.3170 7.6604 24 6 1.1546 -1.0062 8.7721 25 6 2.2587 -0.5520 9.4690 26 6 2.9177 0.5893 9.0519 27 6 2.4731 1.2762 7.9378 28 6 1.2891 1.8966 3.6611 29 1 -0.3634 -1.0235 0.0919 30 1 -0.3633 0.5914 0.8406 31 1 -0.3633 0.4323 -0.9323 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 5.8907 0.3692 -2.0147 35 1 3.3857 3.2460 1.4280 36 1 2.0564 4.0448 0.5546 37 1 1.9822 3.8739 2.3248 38 1 3.7976 0.5491 1.7214 39 1 3.8606 2.0257 2.7154 40 1 4.7043 0.0993 4.0054 41 1 3.1876 -0.7837 3.7060 42 1 3.4488 1.8658 5.1999 43 1 3.1571 0.2752 5.9431 44 1 1.1170 2.6294 6.1351 45 1 -0.1932 1.4428 5.9265 46 1 -0.1578 -0.6695 7.1183 47 1 0.6398 -1.8981 9.0977 48 1 2.6065 -1.0889 10.3390 49 1 3.7806 0.9439 9.5962 50 1 2.9882 2.1676 7.6116 51 1 1.7515 2.8719 3.8126 52 1 0.2133 2.0202 3.5371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388426274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:40 Heat of formation + Delta-G solvation = 37.882972 kcal Electronic energy + Delta-G solvation = -28130.915711 eV Core-core repulsion = 24709.190476 eV Total energy + Delta-G solvation = -3421.725235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17863 -40.10093 -38.08901 -34.87581 -34.13103 -33.40613 -32.01978 -31.74727 -30.42381 -28.85674 -27.19440 -26.68880 -24.15222 -23.97969 -23.50091 -23.12404 -21.93754 -20.99742 -19.74887 -18.96184 -17.56298 -17.26395 -16.93467 -16.35695 -16.22354 -15.96860 -15.69167 -15.34661 -15.24701 -14.83321 -14.68936 -14.48999 -14.20878 -13.97176 -13.71022 -13.61271 -13.56074 -13.35921 -13.24754 -13.07832 -12.88183 -12.70562 -12.58488 -12.29721 -12.18079 -11.94818 -11.86508 -11.81364 -11.69665 -11.45469 -11.35654 -11.19341 -10.97809 -10.72749 -10.36761 -9.74909 -9.67380 -9.15612 -8.77166 -8.22204 -6.18030 0.45213 0.55704 1.34330 1.41343 1.49544 2.40275 2.73122 3.11118 3.14690 3.55276 3.83438 3.97564 4.03925 4.08768 4.15007 4.20699 4.31848 4.38061 4.44403 4.45759 4.50636 4.55730 4.63341 4.66292 4.69490 4.75271 4.76087 4.77507 4.84147 4.88762 4.97012 4.99614 5.05870 5.15456 5.16503 5.21033 5.23003 5.25027 5.27078 5.35289 5.49796 5.56312 5.58317 5.60893 5.67307 5.73736 5.75638 5.81573 6.11720 6.15660 6.20159 6.32992 6.46945 6.61560 6.87634 7.44892 8.91611 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.003333 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.324317 B = 8398.268316 C = 8673.324616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.187 3.813 4 H 0.027 0.973 5 C -0.534 4.534 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.911 3.089 10 H -0.287 1.287 11 H -0.295 1.295 12 H -0.221 1.221 13 N -0.520 5.520 14 C 0.033 3.967 15 C 0.099 3.901 16 H 0.083 0.917 17 C -0.153 4.153 18 C -0.110 4.110 19 C 0.068 3.932 20 N -0.533 5.533 21 C 0.097 3.903 22 C -0.090 4.090 23 C -0.111 4.111 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.126 4.126 28 C 0.075 3.925 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.260 0.740 35 H 0.017 0.983 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.082 0.918 44 H 0.042 0.958 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.118 0.882 51 H 0.028 0.972 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.652 -0.767 19.258 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.079 3.921 4 H 0.044 0.956 5 C -0.572 4.572 6 H 0.085 0.915 7 C -0.176 4.176 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.214 1.214 11 H -0.222 1.222 12 H -0.143 1.143 13 N -0.242 5.242 14 C -0.115 4.115 15 C -0.010 4.010 16 H 0.101 0.899 17 C -0.192 4.192 18 C -0.149 4.149 19 C -0.060 4.060 20 N -0.258 5.258 21 C -0.030 4.030 22 C -0.091 4.091 23 C -0.129 4.129 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.144 4.144 28 C -0.053 4.053 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.112 0.888 46 H 0.148 0.852 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.154 0.846 50 H 0.136 0.864 51 H 0.046 0.954 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.259 -1.176 19.010 22.125 hybrid contribution 1.860 0.587 -1.144 2.261 sum -9.399 -0.589 17.866 20.196 Atomic orbital electron populations 1.21678 0.94911 1.01020 1.01739 1.22028 0.96136 0.97655 1.00326 1.19518 0.91868 0.91555 0.89182 0.95567 1.22202 0.92642 1.39359 1.03032 0.91450 1.25655 0.95308 0.95114 1.01520 1.70098 1.11720 1.46738 1.29769 0.86455 0.82484 0.77038 0.80329 1.21387 1.22205 1.14319 1.62544 1.55798 1.03689 1.02165 1.22245 0.96893 0.91600 1.00776 1.21566 0.93086 0.96941 0.89430 0.89859 1.22609 0.98670 0.99045 0.98853 1.21532 0.99371 0.99309 0.94679 1.22062 0.87425 0.98544 0.97992 1.61950 1.10588 1.49741 1.03488 1.21094 0.99680 0.95743 0.86496 1.19826 0.96314 0.96761 0.96174 1.21238 1.00366 0.94571 0.96765 1.21449 0.97222 1.00372 0.95535 1.21461 0.95883 0.96634 1.00552 1.21377 1.00533 0.96054 0.96816 1.21225 0.96522 1.00522 0.96156 1.22022 1.01064 0.93141 0.89067 0.92771 0.91478 0.93809 0.94172 0.92736 0.93144 0.96440 0.92786 0.91290 0.90539 0.94680 0.92598 0.92151 0.95926 0.90018 0.93979 0.88829 0.85230 0.84243 0.84166 0.84612 0.86376 0.95356 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.57 71.98 0.69 -3.84 16 2 C -0.12 -5.04 4.11 30.59 0.13 -4.92 16 3 C 0.19 8.27 1.55 44.17 0.07 8.34 16 4 H 0.03 1.22 6.91 -2.38 -0.02 1.20 16 5 C -0.53 -28.09 5.86 25.60 0.15 -27.94 16 6 H 0.07 3.86 4.16 -2.91 -0.01 3.85 16 7 C 0.02 1.22 5.37 84.66 0.45 1.68 16 8 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.91 43.01 25.73 68.60 1.77 44.78 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.22 -9.42 5.28 99.48 0.53 -8.90 16 13 N -0.52 -19.93 4.26 -875.89 -3.73 -23.66 16 14 C 0.03 1.25 8.37 127.69 1.07 2.32 16 15 C 0.10 3.49 1.62 44.97 0.07 3.57 16 16 H 0.08 3.10 5.25 -2.39 -0.01 3.08 16 17 C -0.15 -6.06 3.43 30.67 0.11 -5.96 16 18 C -0.11 -3.71 6.09 30.64 0.19 -3.53 16 19 C 0.07 1.91 4.58 86.33 0.40 2.30 16 20 N -0.53 -14.20 4.80 -900.94 -4.32 -18.52 16 21 C 0.10 2.09 5.43 85.56 0.46 2.55 16 22 C -0.09 -1.89 4.12 -19.86 -0.08 -1.97 16 23 C -0.11 -2.14 9.70 22.27 0.22 -1.93 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 26 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 27 C -0.13 -2.51 7.79 22.27 0.17 -2.33 16 28 C 0.07 2.18 4.58 86.33 0.40 2.57 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.15 7.16 -2.38 -0.02 2.13 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.74 4.60 -2.39 -0.01 1.73 16 33 H 0.05 2.27 5.63 -2.39 -0.01 2.26 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.02 0.75 4.63 -2.39 -0.01 0.74 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.20 6.17 -2.38 -0.01 2.18 16 38 H 0.08 3.76 4.88 -2.39 -0.01 3.74 16 39 H 0.03 1.47 6.13 -2.39 -0.01 1.45 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 2.20 5.64 -2.39 -0.01 2.19 16 44 H 0.04 0.89 8.02 -2.39 -0.02 0.87 16 45 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 46 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 49 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 50 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 51 H 0.03 0.84 6.34 -2.39 -0.02 0.83 16 52 H 0.09 2.33 8.12 -2.39 -0.02 2.31 16 Total: -1.00 -60.82 369.74 -0.12 -60.94 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.71 Total: 28.44 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 5.16 Total: -34.88 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -7.75 Total: -99.28 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.77 Total: 44.78 kcal Total: -60.82 -0.12 -60.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388426274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.824 kcal (2) G-P(sol) polarization free energy of solvation -60.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds