Wall clock time and date at job start Tue Mar 31 2020 11:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 H 1.08998 * 109.46630 * 60.82568 * 3 2 1 5 5 C 1.50695 * 109.47229 * 180.82306 * 3 2 1 6 6 H 1.08006 * 119.99851 * 121.32289 * 5 3 2 7 7 C 1.37879 * 120.00392 * 301.32485 * 5 3 2 8 8 N 1.31519 * 119.99687 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00230 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47198 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47368 * 119.99755 * 9 7 5 12 12 H 1.48506 * 109.47194 * 240.00170 * 9 7 5 13 13 N 1.46895 * 109.46846 * 300.82539 * 3 2 1 14 14 C 1.46903 * 111.00012 * 189.05470 * 13 3 2 15 15 C 1.46896 * 111.00153 * 313.01120 * 13 3 2 16 16 H 1.08999 * 109.50478 * 50.55204 * 15 13 3 17 17 C 1.53123 * 109.49868 * 290.47327 * 15 13 3 18 18 C 1.53120 * 109.15894 * 182.36545 * 17 15 13 19 19 C 1.53041 * 109.27774 * 57.65548 * 18 17 15 20 20 N 1.46840 * 109.52232 * 300.82142 * 19 18 17 21 21 C 1.46906 * 110.99892 * 185.83916 * 20 19 18 22 22 C 1.50707 * 109.46996 * 66.04363 * 21 20 19 23 23 C 1.38231 * 119.99637 * 90.00304 * 22 21 20 24 24 C 1.38236 * 119.99764 * 179.72582 * 23 22 21 25 25 C 1.38235 * 120.00141 * 0.25441 * 24 23 22 26 26 C 1.38236 * 119.99862 * 0.02562 * 25 24 23 27 27 C 1.38234 * 120.00100 * 270.25795 * 22 21 20 28 28 C 1.46839 * 111.20058 * 61.74363 * 20 19 18 29 29 H 1.09000 * 109.47112 * 184.50537 * 1 2 3 30 30 H 1.09008 * 109.46880 * 304.50143 * 1 2 3 31 31 H 1.08991 * 109.47386 * 64.50321 * 1 2 3 32 32 H 1.08992 * 109.47234 * 240.00137 * 2 1 3 33 33 H 1.09000 * 109.47160 * 119.99877 * 2 1 3 34 34 H 0.97001 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47255 * 188.95632 * 14 13 3 36 36 H 1.09001 * 109.46811 * 308.95181 * 14 13 3 37 37 H 1.08994 * 109.46996 * 68.95534 * 14 13 3 38 38 H 1.08994 * 109.52140 * 62.46659 * 17 15 13 39 39 H 1.08993 * 109.52600 * 302.27095 * 17 15 13 40 40 H 1.09002 * 109.50654 * 297.71457 * 18 17 15 41 41 H 1.09004 * 109.53793 * 177.61898 * 18 17 15 42 42 H 1.09006 * 109.46161 * 180.80038 * 19 18 17 43 43 H 1.08998 * 109.46028 * 60.84266 * 19 18 17 44 44 H 1.09000 * 109.47285 * 306.04657 * 21 20 19 45 45 H 1.08999 * 109.47028 * 186.04537 * 21 20 19 46 46 H 1.08001 * 120.00248 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99857 * 180.28131 * 24 23 22 48 48 H 1.07999 * 119.99789 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.99727 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.99983 * 0.04403 * 27 22 21 51 51 H 1.09000 * 109.46395 * 58.27476 * 28 20 19 52 52 H 1.09003 * 109.46795 * 178.24131 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6888 1.9520 0.8973 5 6 3.5468 1.4426 -0.0204 6 1 4.0760 1.9327 -0.8244 7 6 4.2500 0.8170 0.9871 8 7 3.6057 0.2206 1.9663 9 14 6.1178 0.8165 0.9614 10 1 6.5965 1.5491 -0.2382 11 1 6.6299 1.4826 2.1859 12 1 6.6119 -0.5833 0.9158 13 7 1.5341 2.1407 -1.1893 14 6 2.1713 3.4559 -1.3385 15 6 1.7200 1.3256 -2.3971 16 1 1.3247 0.3245 -2.2250 17 6 3.2123 1.2360 -2.7286 18 6 3.3928 0.4348 -4.0209 19 6 2.6041 1.1076 -5.1468 20 7 1.1831 1.1685 -4.7819 21 6 0.3751 1.6823 -5.8961 22 6 0.4104 0.6989 -7.0376 23 6 -0.5381 -0.3036 -7.1157 24 6 -0.5091 -1.2022 -8.1658 25 6 0.4716 -1.1015 -9.1348 26 6 1.4236 -0.1026 -9.0534 27 6 1.3945 0.7961 -8.0035 28 6 0.9800 1.9725 -3.5701 29 1 -0.3633 -1.0245 0.0807 30 1 -0.3633 0.5821 0.8470 31 1 -0.3634 0.4423 -0.9275 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.1004 -0.2199 2.6750 35 1 1.6695 4.0153 -2.1280 36 1 2.0956 4.0049 -0.3999 37 1 3.2215 3.3234 -1.5983 38 1 3.7369 0.7365 -1.9142 39 1 3.6166 2.2393 -2.8625 40 1 3.0238 -0.5803 -3.8744 41 1 4.4498 0.4031 -4.2855 42 1 2.7191 0.5316 -6.0651 43 1 2.9830 2.1177 -5.3021 44 1 0.7798 2.6385 -6.2277 45 1 -0.6546 1.8185 -5.5656 46 1 -1.3043 -0.3823 -6.3586 47 1 -1.2530 -1.9827 -8.2293 48 1 0.4939 -1.8033 -9.9553 49 1 2.1900 -0.0242 -9.8103 50 1 2.1385 1.5764 -7.9397 51 1 1.3663 2.9787 -3.7328 52 1 -0.0849 2.0248 -3.3431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388426278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:54 Heat of formation + Delta-G solvation = 44.790127 kcal Electronic energy + Delta-G solvation = -28077.950106 eV Core-core repulsion = 24656.524388 eV Total energy + Delta-G solvation = -3421.425718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.83291 -38.90783 -36.66980 -33.41278 -32.45812 -31.24737 -31.01190 -30.87579 -28.95927 -26.80916 -25.99015 -25.00822 -22.91885 -22.67018 -22.45357 -21.60141 -20.81977 -19.53387 -18.12768 -16.81468 -16.59502 -15.65718 -15.50609 -15.31237 -15.14414 -14.39356 -14.22586 -14.05788 -13.63101 -13.52782 -13.45332 -13.12850 -12.84004 -12.61552 -12.52173 -12.42770 -11.99382 -11.72929 -11.57210 -11.41384 -11.29576 -11.09301 -10.97435 -10.92393 -10.71409 -10.63330 -10.57055 -10.31064 -10.25203 -9.99943 -9.61581 -9.48280 -9.17637 -8.96405 -8.83644 -8.72546 -8.31189 -8.03529 -7.06197 -5.97398 -4.07858 1.26808 1.34225 3.24787 3.34207 3.36186 3.63895 4.25148 4.39055 4.71993 4.77984 4.92225 5.02319 5.16320 5.24216 5.27994 5.35075 5.43515 5.46141 5.54462 5.59579 5.65384 5.81290 5.88892 5.93819 5.98433 6.01200 6.11855 6.23077 6.24760 6.35593 6.37696 6.38887 6.43135 6.47889 6.54019 6.56301 6.60290 6.68078 6.72841 6.80693 6.92848 7.01873 7.11801 7.22796 7.29333 7.33186 7.37459 7.42607 7.69216 7.79452 8.05149 8.19317 8.39896 8.49081 8.99302 9.56103 11.00938 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003469 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.951358 B = 8070.522874 C = 8518.027364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.215 3.785 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.033 3.967 15 C 0.096 3.904 16 H 0.092 0.908 17 C -0.169 4.169 18 C -0.114 4.114 19 C 0.055 3.945 20 N -0.529 5.529 21 C 0.093 3.907 22 C -0.070 4.070 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.115 4.115 28 C 0.066 3.934 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.260 0.740 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.116 0.884 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.038 0.962 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.027 0.973 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.944 0.315 -18.026 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C 0.108 3.892 4 H 0.056 0.944 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.116 4.116 15 C -0.013 4.013 16 H 0.110 0.890 17 C -0.207 4.207 18 C -0.153 4.153 19 C -0.072 4.072 20 N -0.254 5.254 21 C -0.035 4.035 22 C -0.070 4.070 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.133 4.133 28 C -0.062 4.062 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.134 0.866 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.045 0.955 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.594 -0.159 -17.641 18.834 hybrid contribution 2.345 0.660 -0.258 2.450 sum -4.248 0.501 -17.900 18.404 Atomic orbital electron populations 1.21743 0.98883 0.98374 1.00656 1.21727 0.92103 0.99333 1.02419 1.19282 0.92169 0.90497 0.87215 0.94440 1.22081 0.92720 1.34846 1.08618 0.91045 1.24925 0.97829 0.95379 0.95384 1.69885 1.34872 1.35753 1.11688 0.86704 0.86627 0.77743 0.77938 1.19909 1.21107 1.21053 1.62602 1.56675 1.03007 1.03410 1.22204 0.97517 0.91980 0.99904 1.21544 0.92977 0.98163 0.88628 0.89011 1.22910 0.99600 0.99997 0.98225 1.21593 0.98117 1.00233 0.95351 1.22181 0.87564 0.98657 0.98827 1.61842 1.07480 1.52845 1.03218 1.21023 0.99035 0.93841 0.89557 1.19806 0.95167 0.96777 0.95268 1.21052 0.98805 0.94208 0.97581 1.21149 0.98836 0.99197 0.94864 1.21111 0.95541 0.98529 0.99176 1.21086 0.99025 0.95698 0.98338 1.21068 0.98118 0.99524 0.94619 1.22180 1.00820 0.93891 0.89325 0.95625 0.94149 0.93469 0.94333 0.88920 0.93034 0.94439 0.92687 0.94692 0.86587 0.93228 0.91634 0.92617 0.91199 0.95765 0.94421 0.89992 0.85889 0.86232 0.86440 0.86377 0.86495 0.95475 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.46 37.16 0.35 -2.44 16 2 C -0.12 -2.71 4.64 -26.73 -0.12 -2.83 16 3 C 0.21 5.08 2.04 -68.87 -0.14 4.94 16 4 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 5 C -0.54 -13.69 5.51 -34.44 -0.19 -13.88 16 6 H 0.07 1.78 4.12 -52.48 -0.22 1.57 16 7 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 8 N -0.88 -24.22 11.23 55.43 0.62 -23.60 16 9 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 N -0.53 -10.88 4.26 -228.20 -0.97 -11.85 16 14 C 0.03 0.63 8.26 60.07 0.50 1.13 16 15 C 0.10 1.79 1.48 -67.63 -0.10 1.69 16 16 H 0.09 1.87 4.95 -51.93 -0.26 1.61 16 17 C -0.17 -3.19 3.62 -26.61 -0.10 -3.29 16 18 C -0.11 -1.86 6.09 -26.65 -0.16 -2.02 16 19 C 0.06 0.80 5.15 -3.84 -0.02 0.78 16 20 N -0.53 -7.67 4.65 -236.11 -1.10 -8.77 16 21 C 0.09 1.13 5.12 -4.97 -0.03 1.11 16 22 C -0.07 -0.82 4.90 -104.62 -0.51 -1.33 16 23 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.11 -1.25 7.88 -39.58 -0.31 -1.56 16 28 C 0.07 1.04 4.67 -3.84 -0.02 1.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 31 H 0.05 0.91 6.86 -51.93 -0.36 0.55 16 32 H 0.04 0.89 6.17 -51.93 -0.32 0.57 16 33 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.04 0.64 6.68 -51.93 -0.35 0.29 16 36 H 0.05 1.08 8.09 -51.93 -0.42 0.66 16 37 H 0.03 0.71 4.46 -51.93 -0.23 0.48 16 38 H 0.12 2.58 4.92 -51.93 -0.26 2.32 16 39 H 0.05 0.95 6.01 -51.93 -0.31 0.64 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.95 5.73 -51.93 -0.30 0.65 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 45 H 0.08 0.94 7.93 -51.93 -0.41 0.52 16 46 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 50 H 0.12 1.17 7.93 -52.49 -0.42 0.75 16 51 H 0.03 0.44 6.61 -51.93 -0.34 0.09 16 52 H 0.07 1.15 8.01 -51.93 -0.42 0.74 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -26.35 376.87 -12.01 -38.36 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -8.69 Total: 5.93 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -2.52 Total: -21.34 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -1.45 Total: -44.21 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.35 -12.01 -38.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388426278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.146 kcal (2) G-P(sol) polarization free energy of solvation -26.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds