Wall clock time and date at job start Tue Mar 31 2020 11:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47201 * 2 1 4 4 H 1.08998 * 109.46630 * 60.82568 * 3 2 1 5 5 C 1.50695 * 109.47229 * 180.82306 * 3 2 1 6 6 H 1.08006 * 119.99851 * 121.32289 * 5 3 2 7 7 C 1.37879 * 120.00392 * 301.32485 * 5 3 2 8 8 N 1.31519 * 119.99687 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00230 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47198 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47368 * 119.99755 * 9 7 5 12 12 H 1.48506 * 109.47194 * 240.00170 * 9 7 5 13 13 N 1.46895 * 109.46846 * 300.82539 * 3 2 1 14 14 C 1.46903 * 111.00012 * 189.05470 * 13 3 2 15 15 C 1.46896 * 111.00153 * 313.01120 * 13 3 2 16 16 H 1.08999 * 109.50478 * 50.55204 * 15 13 3 17 17 C 1.53123 * 109.49868 * 290.47327 * 15 13 3 18 18 C 1.53120 * 109.15894 * 182.36545 * 17 15 13 19 19 C 1.53041 * 109.27774 * 57.65548 * 18 17 15 20 20 N 1.46840 * 109.52232 * 300.82142 * 19 18 17 21 21 C 1.46906 * 110.99892 * 185.83916 * 20 19 18 22 22 C 1.50707 * 109.46996 * 66.04363 * 21 20 19 23 23 C 1.38231 * 119.99637 * 90.00304 * 22 21 20 24 24 C 1.38236 * 119.99764 * 179.72582 * 23 22 21 25 25 C 1.38235 * 120.00141 * 0.25441 * 24 23 22 26 26 C 1.38236 * 119.99862 * 0.02562 * 25 24 23 27 27 C 1.38234 * 120.00100 * 270.25795 * 22 21 20 28 28 C 1.46839 * 111.20058 * 61.74363 * 20 19 18 29 29 H 1.09000 * 109.47112 * 184.50537 * 1 2 3 30 30 H 1.09008 * 109.46880 * 304.50143 * 1 2 3 31 31 H 1.08991 * 109.47386 * 64.50321 * 1 2 3 32 32 H 1.08992 * 109.47234 * 240.00137 * 2 1 3 33 33 H 1.09000 * 109.47160 * 119.99877 * 2 1 3 34 34 H 0.97001 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47255 * 188.95632 * 14 13 3 36 36 H 1.09001 * 109.46811 * 308.95181 * 14 13 3 37 37 H 1.08994 * 109.46996 * 68.95534 * 14 13 3 38 38 H 1.08994 * 109.52140 * 62.46659 * 17 15 13 39 39 H 1.08993 * 109.52600 * 302.27095 * 17 15 13 40 40 H 1.09002 * 109.50654 * 297.71457 * 18 17 15 41 41 H 1.09004 * 109.53793 * 177.61898 * 18 17 15 42 42 H 1.09006 * 109.46161 * 180.80038 * 19 18 17 43 43 H 1.08998 * 109.46028 * 60.84266 * 19 18 17 44 44 H 1.09000 * 109.47285 * 306.04657 * 21 20 19 45 45 H 1.08999 * 109.47028 * 186.04537 * 21 20 19 46 46 H 1.08001 * 120.00248 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99857 * 180.28131 * 24 23 22 48 48 H 1.07999 * 119.99789 * 180.02562 * 25 24 23 49 49 H 1.08000 * 119.99727 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.99983 * 0.04403 * 27 22 21 51 51 H 1.09000 * 109.46395 * 58.27476 * 28 20 19 52 52 H 1.09003 * 109.46795 * 178.24131 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6888 1.9520 0.8973 5 6 3.5468 1.4426 -0.0204 6 1 4.0760 1.9327 -0.8244 7 6 4.2500 0.8170 0.9871 8 7 3.6057 0.2206 1.9663 9 14 6.1178 0.8165 0.9614 10 1 6.5965 1.5491 -0.2382 11 1 6.6299 1.4826 2.1859 12 1 6.6119 -0.5833 0.9158 13 7 1.5341 2.1407 -1.1893 14 6 2.1713 3.4559 -1.3385 15 6 1.7200 1.3256 -2.3971 16 1 1.3247 0.3245 -2.2250 17 6 3.2123 1.2360 -2.7286 18 6 3.3928 0.4348 -4.0209 19 6 2.6041 1.1076 -5.1468 20 7 1.1831 1.1685 -4.7819 21 6 0.3751 1.6823 -5.8961 22 6 0.4104 0.6989 -7.0376 23 6 -0.5381 -0.3036 -7.1157 24 6 -0.5091 -1.2022 -8.1658 25 6 0.4716 -1.1015 -9.1348 26 6 1.4236 -0.1026 -9.0534 27 6 1.3945 0.7961 -8.0035 28 6 0.9800 1.9725 -3.5701 29 1 -0.3633 -1.0245 0.0807 30 1 -0.3633 0.5821 0.8470 31 1 -0.3634 0.4423 -0.9275 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.1004 -0.2199 2.6750 35 1 1.6695 4.0153 -2.1280 36 1 2.0956 4.0049 -0.3999 37 1 3.2215 3.3234 -1.5983 38 1 3.7369 0.7365 -1.9142 39 1 3.6166 2.2393 -2.8625 40 1 3.0238 -0.5803 -3.8744 41 1 4.4498 0.4031 -4.2855 42 1 2.7191 0.5316 -6.0651 43 1 2.9830 2.1177 -5.3021 44 1 0.7798 2.6385 -6.2277 45 1 -0.6546 1.8185 -5.5656 46 1 -1.3043 -0.3823 -6.3586 47 1 -1.2530 -1.9827 -8.2293 48 1 0.4939 -1.8033 -9.9553 49 1 2.1900 -0.0242 -9.8103 50 1 2.1385 1.5764 -7.9397 51 1 1.3663 2.9787 -3.7328 52 1 -0.0849 2.0248 -3.3431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388426278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:53 Heat of formation + Delta-G solvation = 31.551404 kcal Electronic energy + Delta-G solvation = -28078.524180 eV Core-core repulsion = 24656.524388 eV Total energy + Delta-G solvation = -3421.999792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.04309 -40.00671 -38.03987 -34.94302 -34.01193 -33.02036 -31.98821 -31.72165 -30.36802 -28.57351 -27.13351 -26.63787 -24.42364 -23.91724 -23.46722 -22.95785 -21.88242 -21.04276 -19.70887 -18.50187 -17.56639 -17.19100 -16.85181 -16.33614 -16.18994 -15.89220 -15.63763 -15.31129 -15.18275 -14.88281 -14.47182 -14.44847 -14.22862 -14.02332 -13.62808 -13.47405 -13.40209 -13.20978 -13.11080 -13.01792 -12.75423 -12.70019 -12.46041 -12.31235 -12.11441 -12.02958 -11.88416 -11.84793 -11.76626 -11.50948 -11.31006 -11.20917 -10.90467 -10.54538 -10.29016 -9.72889 -9.63960 -9.16902 -8.80682 -7.95956 -6.13610 0.48652 0.57931 1.36225 1.40760 1.48268 2.42775 2.74905 3.19386 3.21024 3.64244 3.89321 3.99310 4.06164 4.13115 4.18246 4.23038 4.32696 4.43588 4.46264 4.54596 4.56358 4.66024 4.68764 4.71163 4.75901 4.77132 4.78968 4.84710 4.89180 4.94125 5.00597 5.03535 5.13212 5.18083 5.20728 5.23801 5.28049 5.29754 5.45519 5.47361 5.59949 5.62825 5.69023 5.69131 5.77305 5.78706 5.85725 6.08485 6.17265 6.21221 6.24538 6.30226 6.48507 6.76748 7.03000 7.52624 8.98373 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018539 B = 0.003469 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.951358 B = 8070.522874 C = 8518.027364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.539 4.539 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.937 3.063 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.037 3.963 15 C 0.101 3.899 16 H 0.074 0.926 17 C -0.161 4.161 18 C -0.110 4.110 19 C 0.064 3.936 20 N -0.537 5.537 21 C 0.097 3.903 22 C -0.085 4.085 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.125 4.125 28 C 0.078 3.922 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.258 0.742 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.029 0.971 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.125 0.875 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.124 0.876 51 H 0.030 0.970 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 0.452 -20.808 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.147 4.147 3 C 0.114 3.886 4 H 0.018 0.982 5 C -0.578 4.578 6 H 0.091 0.909 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.111 4.111 15 C -0.009 4.009 16 H 0.092 0.908 17 C -0.200 4.200 18 C -0.149 4.149 19 C -0.064 4.064 20 N -0.262 5.262 21 C -0.030 4.030 22 C -0.085 4.085 23 C -0.131 4.131 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.050 4.050 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.143 0.857 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.156 0.844 50 H 0.142 0.858 51 H 0.048 0.952 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.832 -0.012 -20.447 21.559 hybrid contribution 2.387 0.601 0.533 2.518 sum -4.445 0.590 -19.914 20.413 Atomic orbital electron populations 1.21601 0.96436 0.99487 1.00881 1.21527 0.94202 0.98411 1.00536 1.19025 0.91453 0.90743 0.87361 0.98183 1.22327 0.93672 1.33703 1.08068 0.90943 1.25567 1.01345 0.95640 0.95438 1.70018 1.36022 1.36914 1.12359 0.85831 0.82498 0.77475 0.77787 1.19345 1.21244 1.21134 1.62524 1.56432 1.03444 1.03184 1.22191 0.97117 0.91442 1.00364 1.21489 0.93213 0.97277 0.88872 0.90774 1.22679 0.99194 0.99675 0.98411 1.21537 0.99252 0.99344 0.94748 1.22086 0.87275 0.98807 0.98228 1.61798 1.07796 1.52952 1.03608 1.21029 0.98861 0.94256 0.88870 1.19822 0.95999 0.97162 0.95536 1.21216 0.99048 0.94631 0.98255 1.21429 0.99414 0.99346 0.94575 1.21453 0.94997 0.98695 0.99549 1.21391 0.99523 0.95338 0.98449 1.21230 0.98163 1.00076 0.94864 1.21962 1.00476 0.93715 0.88859 0.93939 0.94670 0.92468 0.94837 0.92008 0.93305 0.91567 0.93682 0.95808 0.90233 0.93511 0.92625 0.91592 0.89957 0.95288 0.93731 0.89375 0.85732 0.84505 0.84221 0.84409 0.85837 0.95207 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.46 71.98 0.68 -4.38 16 2 C -0.11 -5.12 4.64 30.60 0.14 -4.97 16 3 C 0.22 10.77 2.04 44.17 0.09 10.86 16 4 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 5 C -0.54 -27.75 5.51 25.60 0.14 -27.61 16 6 H 0.07 3.67 4.12 -2.91 -0.01 3.66 16 7 C 0.02 1.04 5.30 84.65 0.45 1.49 16 8 N -0.91 -51.68 11.23 21.45 0.24 -51.44 16 9 Si 0.94 43.08 29.54 68.60 2.03 45.10 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.53 -21.69 4.26 -875.90 -3.73 -25.43 16 14 C 0.04 1.42 8.26 127.69 1.05 2.47 16 15 C 0.10 3.68 1.48 44.97 0.07 3.75 16 16 H 0.07 3.00 4.95 -2.39 -0.01 2.99 16 17 C -0.16 -6.02 3.62 30.68 0.11 -5.91 16 18 C -0.11 -3.46 6.09 30.65 0.19 -3.27 16 19 C 0.06 1.70 5.15 86.33 0.44 2.14 16 20 N -0.54 -14.48 4.65 -900.92 -4.19 -18.66 16 21 C 0.10 2.14 5.12 85.56 0.44 2.57 16 22 C -0.08 -1.81 4.90 -19.86 -0.10 -1.90 16 23 C -0.11 -2.32 9.70 22.27 0.22 -2.11 16 24 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 26 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 27 C -0.12 -2.42 7.88 22.27 0.18 -2.25 16 28 C 0.08 2.33 4.67 86.33 0.40 2.74 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 2.15 6.86 -2.39 -0.02 2.13 16 32 H 0.03 1.58 6.17 -2.39 -0.01 1.57 16 33 H 0.06 3.32 5.99 -2.39 -0.01 3.31 16 34 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.07 2.12 6.68 -2.39 -0.02 2.11 16 36 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 37 H 0.02 0.95 4.46 -2.39 -0.01 0.94 16 38 H 0.08 3.59 4.92 -2.39 -0.01 3.57 16 39 H 0.05 1.76 6.01 -2.39 -0.01 1.74 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.08 2.03 5.73 -2.38 -0.01 2.02 16 43 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 45 H 0.09 1.82 7.93 -2.39 -0.02 1.80 16 46 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 47 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 48 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 49 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 50 H 0.12 2.16 7.93 -2.91 -0.02 2.13 16 51 H 0.03 0.88 6.61 -2.39 -0.02 0.87 16 52 H 0.08 2.28 8.01 -2.39 -0.02 2.26 16 Total: -1.00 -57.38 376.87 0.41 -56.97 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.89 Total: 25.81 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 5.17 Total: -32.35 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -7.68 Total: -95.53 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -57.38 0.41 -56.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388426278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.521 kcal (2) G-P(sol) polarization free energy of solvation -57.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds