Wall clock time and date at job start Tue Mar 31 2020 11:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.09005 * 109.47364 * 55.08882 * 3 2 1 5 5 C 1.50693 * 109.47354 * 175.09181 * 3 2 1 6 6 H 1.08010 * 120.00285 * 119.99572 * 5 3 2 7 7 C 1.37874 * 120.00235 * 300.00152 * 5 3 2 8 8 N 1.31522 * 119.99567 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00464 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47506 * 59.99453 * 9 7 5 11 11 H 1.48497 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46718 * 299.99523 * 9 7 5 13 13 N 1.46905 * 109.46902 * 295.09119 * 3 2 1 14 14 C 1.46901 * 111.00109 * 154.23679 * 13 3 2 15 15 C 1.52995 * 109.47069 * 185.20647 * 14 13 3 16 16 H 1.08999 * 109.50746 * 304.92014 * 15 14 13 17 17 C 1.53115 * 109.50534 * 65.00296 * 15 14 13 18 18 C 1.53115 * 109.16406 * 177.59394 * 17 15 14 19 19 C 1.53035 * 109.27765 * 302.34519 * 18 17 15 20 20 N 1.46844 * 109.51670 * 59.18376 * 19 18 17 21 21 C 1.46899 * 111.00512 * 174.15539 * 20 19 18 22 22 C 1.50702 * 109.46651 * 66.04366 * 21 20 19 23 23 C 1.38236 * 120.00203 * 269.72359 * 22 21 20 24 24 C 1.38240 * 120.00086 * 179.78943 * 23 22 21 25 25 C 1.38230 * 119.99790 * 0.47227 * 24 23 22 26 26 C 1.38235 * 120.00153 * 359.76316 * 25 24 23 27 27 C 1.38232 * 120.00009 * 0.02562 * 26 25 24 28 28 C 1.46855 * 111.19852 * 298.24335 * 20 19 18 29 29 H 1.09003 * 109.46763 * 180.10771 * 1 2 3 30 30 H 1.08997 * 109.47375 * 300.10476 * 1 2 3 31 31 H 1.08992 * 109.47466 * 60.11199 * 1 2 3 32 32 H 1.08999 * 109.47239 * 239.99954 * 2 1 3 33 33 H 1.09000 * 109.47207 * 119.99843 * 2 1 3 34 34 H 0.97003 * 119.99356 * 180.02562 * 8 7 5 35 35 H 1.00895 * 110.99812 * 278.19583 * 13 3 2 36 36 H 1.09000 * 109.46749 * 65.20684 * 14 13 3 37 37 H 1.09006 * 109.47057 * 305.21039 * 14 13 3 38 38 H 1.09001 * 109.52427 * 57.68537 * 17 15 14 39 39 H 1.09003 * 109.52328 * 297.50234 * 17 15 14 40 40 H 1.09000 * 109.50770 * 182.40603 * 18 17 15 41 41 H 1.08999 * 109.53751 * 62.30313 * 18 17 15 42 42 H 1.08997 * 109.46662 * 179.19423 * 19 18 17 43 43 H 1.09005 * 109.46348 * 299.17076 * 19 18 17 44 44 H 1.08994 * 109.47729 * 186.04695 * 21 20 19 45 45 H 1.09002 * 109.46923 * 306.05156 * 21 20 19 46 46 H 1.08006 * 120.00082 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99765 * 180.25694 * 24 23 22 48 48 H 1.07995 * 120.00032 * 179.78774 * 25 24 23 49 49 H 1.08004 * 120.00077 * 180.02562 * 26 25 24 50 50 H 1.08001 * 120.00459 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.46465 * 301.74379 * 28 20 19 52 52 H 1.08995 * 109.45544 * 181.76121 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9812 0.8427 5 6 3.5420 1.4443 0.1216 6 1 4.1462 1.8893 -0.6553 7 6 4.1451 0.8779 1.2244 8 7 3.4094 0.3364 2.1706 9 14 6.0070 0.8807 1.3755 10 1 6.5015 2.2810 1.3758 11 1 6.4017 0.2166 2.6437 12 1 6.5978 0.1473 0.2273 13 7 1.6494 2.0999 -1.2543 14 6 1.5532 3.5552 -1.0783 15 6 1.0207 4.1903 -2.3643 16 1 1.6510 3.8963 -3.2035 17 6 -0.4142 3.7170 -2.6121 18 6 -0.9601 4.4035 -3.8672 19 6 -0.8904 5.9212 -3.6839 20 7 0.5024 6.3237 -3.4507 21 6 0.6276 7.7867 -3.4080 22 6 -0.1058 8.3186 -2.2036 23 6 -1.4381 8.6724 -2.3063 24 6 -2.1120 9.1561 -1.2004 25 6 -1.4509 9.2953 0.0055 26 6 -0.1172 8.9461 0.1069 27 6 0.5555 8.4583 -0.9977 28 6 1.0331 5.7143 -2.2245 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3634 0.5154 0.8890 31 1 -0.3634 0.5120 -0.8909 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8337 -0.0618 2.9467 35 1 2.2893 1.8672 -1.9989 36 1 2.5402 3.9601 -0.8547 37 1 0.8742 3.7775 -0.2550 38 1 -1.0363 3.9761 -1.7554 39 1 -0.4217 2.6365 -2.7554 40 1 -1.9961 4.1032 -4.0249 41 1 -0.3617 4.1134 -4.7309 42 1 -1.2651 6.4131 -4.5815 43 1 -1.5006 6.2121 -2.8287 44 1 1.6808 8.0595 -3.3418 45 1 0.1975 8.2147 -4.3135 46 1 -1.9537 8.5672 -3.2495 47 1 -3.1540 9.4286 -1.2796 48 1 -1.9764 9.6765 0.8686 49 1 0.3992 9.0545 1.0493 50 1 1.5976 8.1858 -0.9187 51 1 0.4137 6.0062 -1.3764 52 1 2.0553 6.0559 -2.0624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390714565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:59 Heat of formation + Delta-G solvation = 7.301871 kcal Electronic energy + Delta-G solvation = -27173.384068 eV Core-core repulsion = 23750.332737 eV Total energy + Delta-G solvation = -3423.051331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13495 -38.38548 -36.23522 -34.31380 -32.57981 -31.50525 -31.08927 -30.63414 -29.89584 -26.64067 -26.28973 -24.35648 -23.13344 -22.76486 -22.27416 -21.49705 -20.53708 -19.68160 -19.10545 -16.89839 -16.63388 -15.88399 -15.51494 -15.30454 -14.85053 -14.66390 -14.39059 -14.24630 -13.99871 -13.59784 -13.49544 -13.32591 -13.03522 -12.76300 -12.65629 -12.41942 -12.19273 -11.80223 -11.74638 -11.53060 -11.39963 -11.20308 -11.12082 -11.03682 -10.87515 -10.77289 -10.62912 -10.26341 -10.17938 -10.12726 -9.94971 -9.55545 -9.35839 -9.04926 -9.01245 -8.91283 -8.35439 -8.31009 -7.17628 -5.97157 -4.10235 1.17120 1.24550 3.28930 3.34153 3.36612 3.58488 4.00881 4.40953 4.63506 4.64880 4.84396 4.93991 4.98135 5.00478 5.15990 5.21372 5.25843 5.33577 5.34153 5.49669 5.56313 5.62049 5.66558 5.78359 5.83070 5.85356 5.87051 5.96165 6.00734 6.06215 6.22625 6.28874 6.33520 6.36092 6.39954 6.43497 6.47444 6.54387 6.64419 6.72710 6.78809 6.83471 6.84408 7.09058 7.12774 7.18100 7.21031 7.48332 7.63226 7.80510 8.13012 8.19694 8.38003 8.71720 9.03475 9.57260 11.02599 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003203 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.348942 B = 8739.384453 C = 9458.632238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.029 0.971 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.686 5.686 14 C 0.075 3.925 15 C -0.078 4.078 16 H 0.071 0.929 17 C -0.103 4.103 18 C -0.118 4.118 19 C 0.053 3.947 20 N -0.524 5.524 21 C 0.091 3.909 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.119 4.119 27 C -0.106 4.106 28 C 0.059 3.941 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.261 0.739 35 H 0.326 0.674 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.036 0.964 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.122 0.878 51 H 0.039 0.961 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.195 16.208 -9.218 21.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.315 5.315 14 C -0.056 4.056 15 C -0.097 4.097 16 H 0.090 0.910 17 C -0.141 4.141 18 C -0.156 4.156 19 C -0.075 4.075 20 N -0.246 5.246 21 C -0.036 4.036 22 C -0.121 4.121 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.137 4.137 27 C -0.124 4.124 28 C -0.069 4.069 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.057 0.943 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.575 15.808 -9.341 21.189 hybrid contribution 1.538 0.577 1.096 1.974 sum -9.037 16.384 -8.244 20.447 Atomic orbital electron populations 1.21693 0.99075 0.98243 1.00352 1.21486 0.92030 0.99323 1.01558 1.19108 0.92631 0.91154 0.86272 0.95258 1.21851 0.92860 1.38118 1.05551 0.92963 1.24931 0.97842 0.95031 0.95718 1.69877 1.34856 1.38251 1.09407 0.86730 0.86185 0.78150 0.77343 1.20450 1.21265 1.20277 1.60843 1.54859 1.05947 1.09819 1.21710 0.98424 0.90255 0.95210 1.21171 0.97153 0.92456 0.98966 0.91011 1.21477 0.95288 1.01164 0.96168 1.21629 1.00559 0.93877 0.99521 1.22144 0.88657 0.96698 0.99958 1.62342 1.19584 1.05941 1.36759 1.21271 1.00148 0.87814 0.94411 1.20714 0.95064 0.99358 0.96975 1.21048 0.94152 0.99104 0.98637 1.21131 0.99754 1.00045 0.93197 1.21154 0.94887 1.00291 0.97674 1.21193 0.94855 0.99035 0.98659 1.21139 1.00087 0.98641 0.92567 1.22177 0.99437 0.95186 0.90077 0.95770 0.94637 0.93274 0.95162 0.89303 0.92884 0.85798 0.95681 0.92548 0.93060 0.90352 0.92112 0.91446 0.91553 0.94577 0.89882 0.90119 0.86383 0.86288 0.86269 0.86039 0.86031 0.94314 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.80 37.16 0.36 -2.47 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.33 1.98 -68.86 -0.14 5.19 16 4 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 5 C -0.54 -14.66 8.46 -34.45 -0.29 -14.95 16 6 H 0.05 1.40 7.73 -52.48 -0.41 0.99 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.09 11.30 55.43 0.63 -24.47 16 9 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.09 5.18 -107.95 -0.56 -14.65 16 14 C 0.07 1.38 4.90 -3.83 -0.02 1.36 16 15 C -0.08 -1.18 2.54 -90.54 -0.23 -1.40 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.10 -1.47 5.14 -26.61 -0.14 -1.61 16 18 C -0.12 -1.40 6.09 -26.65 -0.16 -1.57 16 19 C 0.05 0.60 4.84 -3.84 -0.02 0.58 16 20 N -0.52 -6.22 4.86 -236.11 -1.15 -7.37 16 21 C 0.09 0.92 5.56 -4.98 -0.03 0.89 16 22 C -0.12 -1.26 4.03 -104.62 -0.42 -1.68 16 23 C -0.11 -1.10 8.14 -39.58 -0.32 -1.42 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 27 C -0.11 -1.16 8.02 -39.58 -0.32 -1.48 16 28 C 0.06 0.80 3.82 -3.83 -0.01 0.78 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.97 7.75 -51.93 -0.40 0.57 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.33 6.72 8.46 -39.29 -0.33 6.38 16 36 H 0.02 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.22 7.83 -51.93 -0.41 0.81 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.04 0.43 6.57 -51.93 -0.34 0.09 16 44 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.08 0.71 8.00 -51.93 -0.42 0.30 16 46 H 0.12 0.99 8.05 -52.48 -0.42 0.57 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 49 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 50 H 0.12 1.27 8.02 -52.49 -0.42 0.85 16 51 H 0.04 0.56 6.47 -51.93 -0.34 0.22 16 52 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 398.69 15.07 6.01 6.01 Total: -1.00 -27.79 398.69 -12.91 -40.70 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -9.65 Total: 7.13 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -3.17 Total: -23.51 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.08 Total: -46.49 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.79 -12.91 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.998 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds