Wall clock time and date at job start Tue Mar 31 2020 11:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 H 1.09005 * 109.47364 * 55.08882 * 3 2 1 5 5 C 1.50693 * 109.47354 * 175.09181 * 3 2 1 6 6 H 1.08010 * 120.00285 * 119.99572 * 5 3 2 7 7 C 1.37874 * 120.00235 * 300.00152 * 5 3 2 8 8 N 1.31522 * 119.99567 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00464 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47506 * 59.99453 * 9 7 5 11 11 H 1.48497 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46718 * 299.99523 * 9 7 5 13 13 N 1.46905 * 109.46902 * 295.09119 * 3 2 1 14 14 C 1.46901 * 111.00109 * 154.23679 * 13 3 2 15 15 C 1.52995 * 109.47069 * 185.20647 * 14 13 3 16 16 H 1.08999 * 109.50746 * 304.92014 * 15 14 13 17 17 C 1.53115 * 109.50534 * 65.00296 * 15 14 13 18 18 C 1.53115 * 109.16406 * 177.59394 * 17 15 14 19 19 C 1.53035 * 109.27765 * 302.34519 * 18 17 15 20 20 N 1.46844 * 109.51670 * 59.18376 * 19 18 17 21 21 C 1.46899 * 111.00512 * 174.15539 * 20 19 18 22 22 C 1.50702 * 109.46651 * 66.04366 * 21 20 19 23 23 C 1.38236 * 120.00203 * 269.72359 * 22 21 20 24 24 C 1.38240 * 120.00086 * 179.78943 * 23 22 21 25 25 C 1.38230 * 119.99790 * 0.47227 * 24 23 22 26 26 C 1.38235 * 120.00153 * 359.76316 * 25 24 23 27 27 C 1.38232 * 120.00009 * 0.02562 * 26 25 24 28 28 C 1.46855 * 111.19852 * 298.24335 * 20 19 18 29 29 H 1.09003 * 109.46763 * 180.10771 * 1 2 3 30 30 H 1.08997 * 109.47375 * 300.10476 * 1 2 3 31 31 H 1.08992 * 109.47466 * 60.11199 * 1 2 3 32 32 H 1.08999 * 109.47239 * 239.99954 * 2 1 3 33 33 H 1.09000 * 109.47207 * 119.99843 * 2 1 3 34 34 H 0.97003 * 119.99356 * 180.02562 * 8 7 5 35 35 H 1.00895 * 110.99812 * 278.19583 * 13 3 2 36 36 H 1.09000 * 109.46749 * 65.20684 * 14 13 3 37 37 H 1.09006 * 109.47057 * 305.21039 * 14 13 3 38 38 H 1.09001 * 109.52427 * 57.68537 * 17 15 14 39 39 H 1.09003 * 109.52328 * 297.50234 * 17 15 14 40 40 H 1.09000 * 109.50770 * 182.40603 * 18 17 15 41 41 H 1.08999 * 109.53751 * 62.30313 * 18 17 15 42 42 H 1.08997 * 109.46662 * 179.19423 * 19 18 17 43 43 H 1.09005 * 109.46348 * 299.17076 * 19 18 17 44 44 H 1.08994 * 109.47729 * 186.04695 * 21 20 19 45 45 H 1.09002 * 109.46923 * 306.05156 * 21 20 19 46 46 H 1.08006 * 120.00082 * 0.02562 * 23 22 21 47 47 H 1.07998 * 119.99765 * 180.25694 * 24 23 22 48 48 H 1.07995 * 120.00032 * 179.78774 * 25 24 23 49 49 H 1.08004 * 120.00077 * 180.02562 * 26 25 24 50 50 H 1.08001 * 120.00459 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.46465 * 301.74379 * 28 20 19 52 52 H 1.08995 * 109.45544 * 181.76121 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9812 0.8427 5 6 3.5420 1.4443 0.1216 6 1 4.1462 1.8893 -0.6553 7 6 4.1451 0.8779 1.2244 8 7 3.4094 0.3364 2.1706 9 14 6.0070 0.8807 1.3755 10 1 6.5015 2.2810 1.3758 11 1 6.4017 0.2166 2.6437 12 1 6.5978 0.1473 0.2273 13 7 1.6494 2.0999 -1.2543 14 6 1.5532 3.5552 -1.0783 15 6 1.0207 4.1903 -2.3643 16 1 1.6510 3.8963 -3.2035 17 6 -0.4142 3.7170 -2.6121 18 6 -0.9601 4.4035 -3.8672 19 6 -0.8904 5.9212 -3.6839 20 7 0.5024 6.3237 -3.4507 21 6 0.6276 7.7867 -3.4080 22 6 -0.1058 8.3186 -2.2036 23 6 -1.4381 8.6724 -2.3063 24 6 -2.1120 9.1561 -1.2004 25 6 -1.4509 9.2953 0.0055 26 6 -0.1172 8.9461 0.1069 27 6 0.5555 8.4583 -0.9977 28 6 1.0331 5.7143 -2.2245 29 1 -0.3633 -1.0277 0.0019 30 1 -0.3634 0.5154 0.8890 31 1 -0.3634 0.5120 -0.8909 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8337 -0.0618 2.9467 35 1 2.2893 1.8672 -1.9989 36 1 2.5402 3.9601 -0.8547 37 1 0.8742 3.7775 -0.2550 38 1 -1.0363 3.9761 -1.7554 39 1 -0.4217 2.6365 -2.7554 40 1 -1.9961 4.1032 -4.0249 41 1 -0.3617 4.1134 -4.7309 42 1 -1.2651 6.4131 -4.5815 43 1 -1.5006 6.2121 -2.8287 44 1 1.6808 8.0595 -3.3418 45 1 0.1975 8.2147 -4.3135 46 1 -1.9537 8.5672 -3.2495 47 1 -3.1540 9.4286 -1.2796 48 1 -1.9764 9.6765 0.8686 49 1 0.3992 9.0545 1.0493 50 1 1.5976 8.1858 -0.9187 51 1 0.4137 6.0062 -1.3764 52 1 2.0553 6.0559 -2.0624 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390714565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:58 Heat of formation + Delta-G solvation = -6.791941 kcal Electronic energy + Delta-G solvation = -27173.995221 eV Core-core repulsion = 23750.332737 eV Total energy + Delta-G solvation = -3423.662484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01494 -39.38566 -37.91185 -35.61092 -34.12696 -33.19032 -31.95888 -31.49894 -31.30241 -28.40060 -27.28315 -25.91018 -24.35619 -24.06157 -23.33205 -22.44834 -21.71502 -21.37207 -20.41612 -18.68252 -17.66569 -16.93619 -16.73321 -16.37987 -16.14156 -15.86812 -15.71292 -15.42267 -15.32753 -14.99826 -14.66295 -14.56745 -14.31542 -13.97430 -13.81965 -13.47642 -13.42718 -13.23323 -13.12261 -13.04868 -12.84040 -12.72093 -12.51511 -12.46411 -12.17574 -12.04927 -11.89325 -11.79419 -11.59399 -11.52211 -11.43710 -11.20531 -11.05250 -10.87652 -10.46047 -9.81557 -9.70038 -9.25500 -9.00788 -8.05022 -6.27908 0.40501 0.48017 1.38543 1.39026 1.46727 2.39716 2.78146 3.07538 3.14544 3.68069 3.85978 3.90107 3.96171 4.06259 4.12481 4.16080 4.26082 4.30360 4.43159 4.53108 4.58866 4.60161 4.60674 4.71320 4.74191 4.76968 4.77712 4.81577 4.87004 4.94125 4.95067 5.03864 5.10808 5.12556 5.13559 5.17362 5.25410 5.28572 5.42435 5.52086 5.53849 5.55150 5.59527 5.60708 5.64546 5.65212 5.78461 6.10330 6.10761 6.12900 6.19246 6.21941 6.40209 6.83373 7.03324 7.43714 8.90870 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013787 B = 0.003203 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.348942 B = 8739.384453 C = 9458.632238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.101 4.101 3 C 0.224 3.776 4 H -0.007 1.007 5 C -0.561 4.561 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.673 5.673 14 C 0.082 3.918 15 C -0.067 4.067 16 H 0.069 0.931 17 C -0.099 4.099 18 C -0.112 4.112 19 C 0.055 3.945 20 N -0.527 5.527 21 C 0.093 3.907 22 C -0.127 4.127 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.136 4.136 27 C -0.123 4.123 28 C 0.071 3.929 29 H 0.044 0.956 30 H 0.026 0.974 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.262 0.738 35 H 0.329 0.671 36 H 0.006 0.994 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.030 0.970 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.136 0.864 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.128 0.872 50 H 0.117 0.883 51 H 0.027 0.973 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 17.131 -10.950 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.011 0.989 5 C -0.600 4.600 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.301 5.301 14 C -0.049 4.049 15 C -0.086 4.086 16 H 0.088 0.912 17 C -0.136 4.136 18 C -0.150 4.150 19 C -0.072 4.072 20 N -0.249 5.249 21 C -0.034 4.034 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.148 4.148 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.058 4.058 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.145 0.855 36 H 0.024 0.976 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.048 0.952 44 H 0.102 0.898 45 H 0.118 0.882 46 H 0.154 0.846 47 H 0.159 0.841 48 H 0.154 0.846 49 H 0.146 0.854 50 H 0.135 0.865 51 H 0.045 0.955 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.416 16.744 -11.091 23.102 hybrid contribution 1.770 0.323 1.660 2.448 sum -9.647 17.067 -9.431 21.755 Atomic orbital electron populations 1.21549 0.96470 0.99672 1.00421 1.21341 0.94338 0.98326 0.99975 1.18884 0.91454 0.91518 0.86661 0.98858 1.22163 0.94149 1.38046 1.05644 0.93251 1.25669 1.02118 0.94753 0.95469 1.70012 1.36469 1.38765 1.09767 0.85747 0.81047 0.78183 0.77461 1.20117 1.20865 1.19603 1.60779 1.54250 1.07031 1.08067 1.21679 0.97237 0.89086 0.96891 1.21020 0.97595 0.93492 0.96485 0.91219 1.21400 0.94401 1.00581 0.97254 1.21587 1.01379 0.94174 0.97818 1.22178 0.88073 0.96266 1.00730 1.62337 1.20139 1.07130 1.35276 1.21322 1.00457 0.86534 0.95099 1.20789 0.95574 0.99718 0.96805 1.21303 0.93889 0.98619 0.99569 1.21462 1.00862 0.99447 0.92913 1.21445 0.94705 1.00031 0.98666 1.21405 0.95575 0.99448 0.98949 1.21258 1.00215 0.99452 0.93298 1.21955 0.99218 0.93898 0.90739 0.93645 0.95450 0.92218 0.95220 0.92246 0.92911 0.85509 0.97553 0.94035 0.94151 0.91678 0.90429 0.91321 0.89178 0.95222 0.89841 0.88165 0.84605 0.84118 0.84564 0.85429 0.86473 0.95462 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.80 71.98 0.71 -4.38 16 2 C -0.10 -4.93 5.45 30.59 0.17 -4.76 16 3 C 0.22 11.33 1.98 44.17 0.09 11.42 16 4 H -0.01 -0.38 7.70 -2.38 -0.02 -0.40 16 5 C -0.56 -30.80 8.46 25.60 0.22 -30.59 16 6 H 0.05 2.68 7.73 -2.91 -0.02 2.65 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.91 -52.72 11.30 21.45 0.24 -52.48 16 9 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.67 -28.15 5.18 -495.44 -2.56 -30.71 16 14 C 0.08 3.11 4.90 86.30 0.42 3.54 16 15 C -0.07 -2.00 2.54 -10.74 -0.03 -2.02 16 16 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 17 C -0.10 -2.73 5.14 30.67 0.16 -2.58 16 18 C -0.11 -2.40 6.09 30.64 0.19 -2.22 16 19 C 0.06 1.09 4.84 86.33 0.42 1.51 16 20 N -0.53 -11.59 4.86 -900.93 -4.38 -15.97 16 21 C 0.09 1.71 5.56 85.56 0.48 2.19 16 22 C -0.13 -2.53 4.03 -19.86 -0.08 -2.61 16 23 C -0.12 -2.04 8.14 22.27 0.18 -1.86 16 24 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 25 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 26 C -0.14 -2.83 10.05 22.27 0.22 -2.61 16 27 C -0.12 -2.71 8.02 22.27 0.18 -2.53 16 28 C 0.07 1.88 3.82 86.32 0.33 2.21 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 3.27 5.95 -2.39 -0.01 3.25 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.33 13.62 8.46 -89.70 -0.76 12.86 16 36 H 0.01 0.26 8.11 -2.39 -0.02 0.24 16 37 H 0.04 1.69 7.93 -2.38 -0.02 1.67 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.97 7.83 -2.39 -0.02 1.95 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 43 H 0.03 0.64 6.57 -2.38 -0.02 0.63 16 44 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 45 H 0.10 1.46 8.00 -2.39 -0.02 1.45 16 46 H 0.14 1.86 8.05 -2.91 -0.02 1.83 16 47 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.13 2.35 8.06 -2.91 -0.02 2.32 16 50 H 0.12 2.54 8.02 -2.91 -0.02 2.52 16 51 H 0.03 0.79 6.47 -2.39 -0.02 0.78 16 52 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 Total: -1.00 -60.20 398.69 -0.03 -60.23 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: 0.10 Total: 31.03 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 4.54 Total: -37.91 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -6.70 Total: -99.16 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -60.20 -0.03 -60.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.439 kcal (2) G-P(sol) polarization free energy of solvation -60.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds