Wall clock time and date at job start Tue Mar 31 2020 11:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 H 1.08994 * 109.47332 * 305.34329 * 3 2 1 5 5 C 1.50697 * 109.46970 * 185.34208 * 3 2 1 6 6 H 1.07999 * 120.00600 * 245.28434 * 5 3 2 7 7 C 1.37885 * 120.00047 * 65.28424 * 5 3 2 8 8 N 1.31513 * 119.99931 * 191.74797 * 7 5 3 9 9 Si 1.86800 * 119.99663 * 11.74169 * 7 5 3 10 10 H 1.48504 * 109.46875 * 92.95664 * 9 7 5 11 11 H 1.48506 * 109.46967 * 212.95069 * 9 7 5 12 12 H 1.48498 * 109.47512 * 332.95165 * 9 7 5 13 13 N 1.46900 * 109.47304 * 65.34597 * 3 2 1 14 14 C 1.46896 * 110.99877 * 255.59987 * 13 3 2 15 15 C 1.52999 * 109.47270 * 184.34208 * 14 13 3 16 16 H 1.08997 * 109.50371 * 305.07764 * 15 14 13 17 17 C 1.53120 * 109.50360 * 65.19668 * 15 14 13 18 18 C 1.53123 * 109.15926 * 177.59635 * 17 15 14 19 19 C 1.53034 * 109.27822 * 302.34665 * 18 17 15 20 20 N 1.46845 * 109.52854 * 59.18005 * 19 18 17 21 21 C 1.46895 * 111.00100 * 174.15949 * 20 19 18 22 22 C 1.50697 * 109.47310 * 294.20512 * 21 20 19 23 23 C 1.38235 * 120.00431 * 269.72978 * 22 21 20 24 24 C 1.38229 * 119.99783 * 179.78679 * 23 22 21 25 25 C 1.38244 * 120.00449 * 0.46598 * 24 23 22 26 26 C 1.38238 * 119.99420 * 359.76631 * 25 24 23 27 27 C 1.38238 * 120.00369 * 0.02562 * 26 25 24 28 28 C 1.46848 * 111.19399 * 298.26000 * 20 19 18 29 29 H 1.09000 * 109.47413 * 175.45051 * 1 2 3 30 30 H 1.09001 * 109.47291 * 295.45433 * 1 2 3 31 31 H 1.09007 * 109.47184 * 55.45001 * 1 2 3 32 32 H 1.09002 * 109.47093 * 239.99923 * 2 1 3 33 33 H 1.09005 * 109.46880 * 119.99773 * 2 1 3 34 34 H 0.97004 * 119.99747 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99926 * 19.55362 * 13 3 2 36 36 H 1.09002 * 109.47434 * 304.34120 * 14 13 3 37 37 H 1.09008 * 109.47449 * 64.34027 * 14 13 3 38 38 H 1.08993 * 109.52163 * 297.50001 * 17 15 14 39 39 H 1.08999 * 109.52135 * 57.69124 * 17 15 14 40 40 H 1.09001 * 109.49988 * 182.40320 * 18 17 15 41 41 H 1.09006 * 109.53329 * 62.30825 * 18 17 15 42 42 H 1.09006 * 109.46282 * 299.16277 * 19 18 17 43 43 H 1.09003 * 109.45366 * 179.19317 * 19 18 17 44 44 H 1.08998 * 109.47074 * 54.21130 * 21 20 19 45 45 H 1.08999 * 109.46830 * 174.20955 * 21 20 19 46 46 H 1.07998 * 120.00077 * 359.97438 * 23 22 21 47 47 H 1.08003 * 120.00384 * 180.25568 * 24 23 22 48 48 H 1.07995 * 120.00314 * 179.78929 * 25 24 23 49 49 H 1.07997 * 119.99938 * 180.02562 * 26 25 24 50 50 H 1.07995 * 120.00301 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.46642 * 301.72003 * 28 20 19 52 52 H 1.09003 * 109.44824 * 181.75086 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 -0.8382 5 6 3.5411 1.4445 -0.1323 6 1 4.1542 1.8098 0.6783 7 6 4.1320 0.9801 -1.2883 8 7 5.4287 0.7637 -1.3228 9 14 3.0905 0.6582 -2.8052 10 1 3.0819 1.8685 -3.6657 11 1 3.6605 -0.4842 -3.5637 12 1 1.7013 0.3343 -2.3924 13 7 1.6585 2.0967 1.2587 14 6 0.5355 3.0209 1.0523 15 6 0.2380 3.7616 2.3577 16 1 0.0660 3.0387 3.1551 17 6 1.4283 4.6529 2.7224 18 6 1.0984 5.4353 3.9967 19 6 -0.1730 6.2565 3.7705 20 7 -1.2824 5.3585 3.4250 21 6 -2.5492 6.0967 3.3363 22 6 -2.9193 6.6249 4.6983 23 6 -3.6974 5.8610 5.5480 24 6 -4.0331 6.3438 6.7989 25 6 -3.5989 7.5946 7.1967 26 6 -2.8248 8.3605 6.3450 27 6 -2.4854 7.8759 5.0956 28 6 -1.0085 4.6313 2.1790 29 1 -0.3634 -1.0244 -0.0815 30 1 -0.3634 0.4417 0.9279 31 1 -0.3634 0.5828 -0.8465 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.8445 0.4373 -2.1363 35 1 1.4394 1.4144 1.9690 36 1 0.7957 3.7415 0.2770 37 1 -0.3461 2.4586 0.7446 38 1 2.3086 4.0333 2.8931 39 1 1.6247 5.3498 1.9076 40 1 1.9252 6.1035 4.2377 41 1 0.9405 4.7397 4.8209 42 1 -0.0096 6.9619 2.9557 43 1 -0.4186 6.8036 4.6807 44 1 -2.4367 6.9293 2.6419 45 1 -3.3341 5.4298 2.9797 46 1 -4.0404 4.8858 5.2356 47 1 -4.6376 5.7454 7.4645 48 1 -3.8640 7.9732 8.1727 49 1 -2.4852 9.3374 6.6558 50 1 -1.8810 8.4744 4.4302 51 1 -0.8412 5.3442 1.3717 52 1 -1.8611 3.9981 1.9334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390714567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:03 Heat of formation + Delta-G solvation = 18.517653 kcal Electronic energy + Delta-G solvation = -26610.652933 eV Core-core repulsion = 23188.087955 eV Total energy + Delta-G solvation = -3422.564978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93024 -38.69268 -36.76538 -34.41215 -32.50952 -31.73464 -31.19862 -31.08700 -29.88211 -27.34346 -26.38796 -24.44873 -23.01525 -22.81375 -22.39664 -21.62632 -20.61744 -20.02783 -19.30308 -16.98457 -16.70004 -16.00672 -15.62593 -15.49386 -15.09990 -14.81979 -14.58962 -14.21703 -14.12116 -13.74466 -13.63060 -13.56319 -13.10211 -13.02680 -12.73770 -12.60410 -12.48495 -12.07963 -11.93228 -11.85205 -11.64042 -11.47766 -11.27738 -11.16257 -10.89042 -10.84553 -10.72871 -10.48503 -10.27286 -10.09325 -10.06070 -9.85858 -9.32504 -9.22202 -9.11655 -9.00123 -8.39000 -8.35748 -7.25431 -6.00941 -3.93879 1.10641 1.18809 3.29165 3.38372 3.40578 3.45761 3.99954 4.46307 4.52216 4.61233 4.77543 4.85539 4.88066 4.98739 5.07347 5.11729 5.17787 5.26007 5.27349 5.40799 5.43497 5.44837 5.55844 5.62061 5.68202 5.77592 5.78352 5.81800 5.84817 5.87094 5.91102 5.94985 6.02997 6.09809 6.21054 6.23292 6.28563 6.33412 6.34980 6.41802 6.51314 6.60718 6.72169 6.75480 6.77603 6.80289 6.91153 7.02572 7.06360 7.22201 7.81649 8.00542 8.40991 8.78243 9.15746 9.64964 11.12730 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.002437 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.136689 B =11488.718066 C =11927.681571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.494 4.494 6 H 0.080 0.920 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.858 3.142 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.252 1.252 13 N -0.668 5.668 14 C 0.064 3.936 15 C -0.076 4.076 16 H 0.073 0.927 17 C -0.106 4.106 18 C -0.117 4.117 19 C 0.053 3.947 20 N -0.530 5.530 21 C 0.092 3.908 22 C -0.073 4.073 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.115 4.115 28 C 0.062 3.938 29 H 0.040 0.960 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.326 0.674 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.033 0.967 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.549 12.624 13.401 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.191 4.191 3 C 0.084 3.916 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.098 0.902 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.176 1.176 13 N -0.298 5.298 14 C -0.067 4.067 15 C -0.096 4.096 16 H 0.092 0.908 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.075 4.075 20 N -0.255 5.255 21 C -0.036 4.036 22 C -0.073 4.073 23 C -0.117 4.117 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.133 4.133 28 C -0.066 4.066 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.143 0.857 36 H 0.082 0.918 37 H 0.037 0.963 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.136 0.864 51 H 0.051 0.949 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.949 12.707 13.575 26.548 hybrid contribution -1.102 -0.239 -1.759 2.090 sum -20.052 12.468 11.816 26.403 Atomic orbital electron populations 1.21932 0.98551 1.00122 1.00457 1.22638 0.92724 1.01683 1.02016 1.19561 0.96605 0.88176 0.87238 0.96199 1.21037 0.89176 1.40656 1.02337 0.90196 1.24932 0.94695 0.95156 0.98529 1.69946 1.10131 1.45948 1.27761 0.87329 0.82145 0.77895 0.84044 1.20926 1.21537 1.17614 1.60551 1.36416 1.22322 1.10486 1.22024 0.92725 0.95910 0.96039 1.21130 0.93399 0.96846 0.98188 0.90845 1.21503 0.98763 0.98015 0.96062 1.21621 0.95616 0.99003 0.99263 1.22200 0.91189 0.94085 1.00010 1.61913 1.01603 1.27990 1.33959 1.21034 0.92826 0.96879 0.92831 1.19767 0.97275 0.94066 0.96207 1.21034 0.97701 0.99294 0.93695 1.21157 1.00318 0.96099 0.96415 1.21140 0.98550 0.94924 0.99576 1.21109 0.98767 0.99875 0.94269 1.21078 0.99872 0.95729 0.96630 1.22129 0.98585 0.96479 0.89393 0.94058 0.93556 0.93751 0.91992 0.92373 0.92898 0.85706 0.91798 0.96279 0.89851 0.92752 0.91903 0.91457 0.95258 0.90804 0.94128 0.89991 0.85991 0.86183 0.86328 0.86245 0.86399 0.94899 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.91 37.16 0.33 -2.30 16 2 C -0.15 -3.17 4.45 -26.73 -0.12 -3.29 16 3 C 0.19 4.41 1.74 -68.87 -0.12 4.29 16 4 H 0.02 0.48 6.27 -51.93 -0.33 0.15 16 5 C -0.49 -13.78 9.29 -34.44 -0.32 -14.10 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 1.95 5.38 -17.82 -0.10 1.85 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.86 21.08 25.75 -169.99 -4.38 16.71 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.25 -5.74 5.29 56.52 0.30 -5.45 16 13 N -0.67 -13.03 5.56 -107.96 -0.60 -13.63 16 14 C 0.06 1.04 4.53 -3.83 -0.02 1.02 16 15 C -0.08 -1.06 2.53 -90.54 -0.23 -1.28 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.11 -1.51 5.14 -26.61 -0.14 -1.65 16 18 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 19 C 0.05 0.59 5.16 -3.84 -0.02 0.57 16 20 N -0.53 -6.01 4.65 -236.12 -1.10 -7.11 16 21 C 0.09 0.89 5.12 -4.98 -0.03 0.86 16 22 C -0.07 -0.70 4.89 -104.62 -0.51 -1.21 16 23 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.11 -1.03 7.88 -39.58 -0.31 -1.34 16 28 C 0.06 0.75 4.74 -3.83 -0.02 0.73 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.72 6.53 -51.93 -0.34 0.38 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.39 4.69 -51.93 -0.24 1.15 16 33 H 0.06 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.33 5.98 7.88 -39.29 -0.31 5.67 16 36 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 37 H 0.02 0.30 6.36 -51.92 -0.33 -0.03 16 38 H 0.08 1.37 7.83 -51.93 -0.41 0.96 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.80 5.75 -51.93 -0.30 0.50 16 44 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 45 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.95 7.95 -52.49 -0.42 0.53 16 51 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -29.95 392.19 -12.21 -42.16 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -9.49 Total: 5.72 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.33 Total: -22.94 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.92 Total: -47.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.38 Total: 16.71 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.95 -12.21 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.678 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds