Wall clock time and date at job start Tue Mar 31 2020 11:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46980 * 2 1 4 4 H 1.08994 * 109.47332 * 305.34329 * 3 2 1 5 5 C 1.50697 * 109.46970 * 185.34208 * 3 2 1 6 6 H 1.07999 * 120.00600 * 245.28434 * 5 3 2 7 7 C 1.37885 * 120.00047 * 65.28424 * 5 3 2 8 8 N 1.31513 * 119.99931 * 191.74797 * 7 5 3 9 9 Si 1.86800 * 119.99663 * 11.74169 * 7 5 3 10 10 H 1.48504 * 109.46875 * 92.95664 * 9 7 5 11 11 H 1.48506 * 109.46967 * 212.95069 * 9 7 5 12 12 H 1.48498 * 109.47512 * 332.95165 * 9 7 5 13 13 N 1.46900 * 109.47304 * 65.34597 * 3 2 1 14 14 C 1.46896 * 110.99877 * 255.59987 * 13 3 2 15 15 C 1.52999 * 109.47270 * 184.34208 * 14 13 3 16 16 H 1.08997 * 109.50371 * 305.07764 * 15 14 13 17 17 C 1.53120 * 109.50360 * 65.19668 * 15 14 13 18 18 C 1.53123 * 109.15926 * 177.59635 * 17 15 14 19 19 C 1.53034 * 109.27822 * 302.34665 * 18 17 15 20 20 N 1.46845 * 109.52854 * 59.18005 * 19 18 17 21 21 C 1.46895 * 111.00100 * 174.15949 * 20 19 18 22 22 C 1.50697 * 109.47310 * 294.20512 * 21 20 19 23 23 C 1.38235 * 120.00431 * 269.72978 * 22 21 20 24 24 C 1.38229 * 119.99783 * 179.78679 * 23 22 21 25 25 C 1.38244 * 120.00449 * 0.46598 * 24 23 22 26 26 C 1.38238 * 119.99420 * 359.76631 * 25 24 23 27 27 C 1.38238 * 120.00369 * 0.02562 * 26 25 24 28 28 C 1.46848 * 111.19399 * 298.26000 * 20 19 18 29 29 H 1.09000 * 109.47413 * 175.45051 * 1 2 3 30 30 H 1.09001 * 109.47291 * 295.45433 * 1 2 3 31 31 H 1.09007 * 109.47184 * 55.45001 * 1 2 3 32 32 H 1.09002 * 109.47093 * 239.99923 * 2 1 3 33 33 H 1.09005 * 109.46880 * 119.99773 * 2 1 3 34 34 H 0.97004 * 119.99747 * 180.02562 * 8 7 5 35 35 H 1.00899 * 110.99926 * 19.55362 * 13 3 2 36 36 H 1.09002 * 109.47434 * 304.34120 * 14 13 3 37 37 H 1.09008 * 109.47449 * 64.34027 * 14 13 3 38 38 H 1.08993 * 109.52163 * 297.50001 * 17 15 14 39 39 H 1.08999 * 109.52135 * 57.69124 * 17 15 14 40 40 H 1.09001 * 109.49988 * 182.40320 * 18 17 15 41 41 H 1.09006 * 109.53329 * 62.30825 * 18 17 15 42 42 H 1.09006 * 109.46282 * 299.16277 * 19 18 17 43 43 H 1.09003 * 109.45366 * 179.19317 * 19 18 17 44 44 H 1.08998 * 109.47074 * 54.21130 * 21 20 19 45 45 H 1.08999 * 109.46830 * 174.20955 * 21 20 19 46 46 H 1.07998 * 120.00077 * 359.97438 * 23 22 21 47 47 H 1.08003 * 120.00384 * 180.25568 * 24 23 22 48 48 H 1.07995 * 120.00314 * 179.78929 * 25 24 23 49 49 H 1.07997 * 119.99938 * 180.02562 * 26 25 24 50 50 H 1.07995 * 120.00301 * 179.97438 * 27 26 25 51 51 H 1.08996 * 109.46642 * 301.72003 * 28 20 19 52 52 H 1.09003 * 109.44824 * 181.75086 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6006 1.9832 -0.8382 5 6 3.5411 1.4445 -0.1323 6 1 4.1542 1.8098 0.6783 7 6 4.1320 0.9801 -1.2883 8 7 5.4287 0.7637 -1.3228 9 14 3.0905 0.6582 -2.8052 10 1 3.0819 1.8685 -3.6657 11 1 3.6605 -0.4842 -3.5637 12 1 1.7013 0.3343 -2.3924 13 7 1.6585 2.0967 1.2587 14 6 0.5355 3.0209 1.0523 15 6 0.2380 3.7616 2.3577 16 1 0.0660 3.0387 3.1551 17 6 1.4283 4.6529 2.7224 18 6 1.0984 5.4353 3.9967 19 6 -0.1730 6.2565 3.7705 20 7 -1.2824 5.3585 3.4250 21 6 -2.5492 6.0967 3.3363 22 6 -2.9193 6.6249 4.6983 23 6 -3.6974 5.8610 5.5480 24 6 -4.0331 6.3438 6.7989 25 6 -3.5989 7.5946 7.1967 26 6 -2.8248 8.3605 6.3450 27 6 -2.4854 7.8759 5.0956 28 6 -1.0085 4.6313 2.1790 29 1 -0.3634 -1.0244 -0.0815 30 1 -0.3634 0.4417 0.9279 31 1 -0.3634 0.5828 -0.8465 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 5.8445 0.4373 -2.1363 35 1 1.4394 1.4144 1.9690 36 1 0.7957 3.7415 0.2770 37 1 -0.3461 2.4586 0.7446 38 1 2.3086 4.0333 2.8931 39 1 1.6247 5.3498 1.9076 40 1 1.9252 6.1035 4.2377 41 1 0.9405 4.7397 4.8209 42 1 -0.0096 6.9619 2.9557 43 1 -0.4186 6.8036 4.6807 44 1 -2.4367 6.9293 2.6419 45 1 -3.3341 5.4298 2.9797 46 1 -4.0404 4.8858 5.2356 47 1 -4.6376 5.7454 7.4645 48 1 -3.8640 7.9732 8.1727 49 1 -2.4852 9.3374 6.6558 50 1 -1.8810 8.4744 4.4302 51 1 -0.8412 5.3442 1.3717 52 1 -1.8611 3.9981 1.9334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390714567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:02 Heat of formation + Delta-G solvation = 0.855526 kcal Electronic energy + Delta-G solvation = -26611.418820 eV Core-core repulsion = 23188.087955 eV Total energy + Delta-G solvation = -3423.330865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.72484 -39.60096 -38.27517 -35.55240 -34.28006 -33.20876 -32.00644 -31.73790 -31.15794 -29.12024 -27.19845 -25.84895 -24.16317 -23.90222 -23.39061 -22.57788 -21.76500 -21.45917 -20.49726 -18.78035 -17.59432 -16.98960 -16.86798 -16.39180 -16.25642 -16.14340 -15.83549 -15.41050 -15.19531 -14.94792 -14.86275 -14.55796 -14.29324 -14.21790 -13.95790 -13.61797 -13.56381 -13.34491 -13.28623 -13.06875 -12.85471 -12.71296 -12.61731 -12.33108 -12.25038 -11.99697 -11.87776 -11.79320 -11.68905 -11.47655 -11.38284 -11.25392 -11.12402 -10.97667 -10.54136 -9.74689 -9.66329 -9.21869 -8.84520 -8.23501 -6.21194 0.46886 0.56379 1.33909 1.37447 1.46450 2.37864 2.73788 3.09983 3.18809 3.58922 3.83575 3.89619 3.97869 4.05168 4.08820 4.21324 4.29855 4.31289 4.33381 4.41532 4.41742 4.47892 4.53139 4.54947 4.64722 4.64762 4.70805 4.72356 4.77132 4.82625 4.87586 4.89778 4.95259 5.06703 5.12680 5.16487 5.17630 5.20525 5.22300 5.23456 5.31086 5.53128 5.55234 5.57968 5.62010 5.68081 5.75727 5.77583 6.08926 6.13725 6.16512 6.20509 6.77770 6.85543 6.89985 7.42548 8.94162 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.002437 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.136689 B =11488.718066 C =11927.681571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.150 4.150 3 C 0.200 3.800 4 H 0.018 0.982 5 C -0.498 4.498 6 H 0.030 0.970 7 C 0.007 3.993 8 N -0.952 5.952 9 Si 0.926 3.074 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.220 1.220 13 N -0.681 5.681 14 C 0.069 3.931 15 C -0.067 4.067 16 H 0.072 0.928 17 C -0.103 4.103 18 C -0.111 4.111 19 C 0.058 3.942 20 N -0.536 5.536 21 C 0.095 3.905 22 C -0.086 4.086 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.125 4.125 28 C 0.069 3.931 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.262 0.738 35 H 0.334 0.666 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.029 0.971 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.123 0.877 51 H 0.030 0.970 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.038 12.961 13.750 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.189 4.189 3 C 0.090 3.910 4 H 0.036 0.964 5 C -0.537 4.537 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.751 3.249 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.142 1.142 13 N -0.311 5.311 14 C -0.061 4.061 15 C -0.086 4.086 16 H 0.091 0.909 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.070 4.070 20 N -0.260 5.260 21 C -0.032 4.032 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.144 4.144 28 C -0.060 4.060 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.152 0.848 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.109 0.891 46 H 0.145 0.855 47 H 0.155 0.845 48 H 0.156 0.844 49 H 0.154 0.846 50 H 0.141 0.859 51 H 0.049 0.951 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.475 13.055 13.950 29.498 hybrid contribution 0.054 -0.277 -1.718 1.741 sum -22.421 12.777 12.232 28.558 Atomic orbital electron populations 1.21833 0.94940 1.01859 1.01515 1.22485 0.95876 0.99412 1.01117 1.19327 0.93107 0.89983 0.88584 0.96395 1.21358 0.91966 1.39531 1.00858 0.95206 1.25810 0.95866 0.95166 1.02041 1.70112 1.12448 1.47955 1.28767 0.86232 0.81887 0.77537 0.79264 1.20856 1.21589 1.14240 1.60339 1.38751 1.22694 1.09336 1.22013 0.91982 0.95123 0.97012 1.21007 0.94103 0.96769 0.96697 0.90919 1.21425 0.98057 0.97729 0.96893 1.21555 0.96650 0.98924 0.97761 1.22133 0.90625 0.93829 1.00366 1.61894 1.02227 1.28428 1.33446 1.21044 0.92011 0.96974 0.93209 1.19828 0.97992 0.94546 0.96291 1.21210 0.97982 0.99665 0.94181 1.21434 1.00370 0.96535 0.96428 1.21457 0.98063 0.94799 1.00428 1.21391 0.98596 1.00712 0.94045 1.21235 1.00160 0.95770 0.97203 1.22022 0.97828 0.96378 0.89723 0.91905 0.91938 0.93382 0.93541 0.92806 0.92918 0.84847 0.93271 0.94470 0.92724 0.93814 0.91213 0.91834 0.95267 0.90067 0.93849 0.89137 0.85507 0.84526 0.84364 0.84559 0.85883 0.95132 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.91 71.98 0.64 -3.75 16 2 C -0.15 -5.99 4.45 30.59 0.14 -5.85 16 3 C 0.20 9.03 1.74 44.17 0.08 9.10 16 4 H 0.02 0.83 6.27 -2.39 -0.01 0.82 16 5 C -0.50 -28.78 9.29 25.60 0.24 -28.55 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.01 0.43 5.38 84.66 0.46 0.89 16 8 N -0.95 -60.66 13.96 21.45 0.30 -60.36 16 9 Si 0.93 43.76 25.75 68.60 1.77 45.53 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.22 -9.17 5.29 99.48 0.53 -8.64 16 13 N -0.68 -26.44 5.56 -495.47 -2.75 -29.20 16 14 C 0.07 2.15 4.53 86.30 0.39 2.54 16 15 C -0.07 -1.76 2.53 -10.74 -0.03 -1.79 16 16 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.10 -2.97 5.14 30.68 0.16 -2.81 16 18 C -0.11 -2.64 6.09 30.65 0.19 -2.45 16 19 C 0.06 1.23 5.16 86.33 0.45 1.67 16 20 N -0.54 -11.13 4.65 -900.94 -4.19 -15.31 16 21 C 0.09 1.65 5.12 85.56 0.44 2.08 16 22 C -0.09 -1.51 4.89 -19.87 -0.10 -1.61 16 23 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 26 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 27 C -0.13 -2.05 7.88 22.27 0.18 -1.87 16 28 C 0.07 1.51 4.74 86.33 0.41 1.92 16 29 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.70 6.53 -2.39 -0.02 1.68 16 31 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.99 4.69 -2.39 -0.01 1.98 16 33 H 0.05 2.17 8.04 -2.38 -0.02 2.15 16 34 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 35 H 0.33 12.02 7.88 -89.69 -0.71 11.32 16 36 H 0.05 1.69 8.01 -2.39 -0.02 1.67 16 37 H 0.04 1.05 6.36 -2.38 -0.02 1.04 16 38 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 42 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.08 1.62 5.75 -2.39 -0.01 1.61 16 44 H 0.04 0.73 8.07 -2.39 -0.02 0.71 16 45 H 0.09 1.41 7.93 -2.39 -0.02 1.39 16 46 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 47 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 48 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 49 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 50 H 0.12 1.79 7.95 -2.91 -0.02 1.77 16 51 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.08 1.65 8.02 -2.39 -0.02 1.63 16 Total: -1.00 -67.03 392.19 -0.38 -67.41 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.02 Total: 28.99 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.51 Total: -37.05 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -6.64 Total: -104.87 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.77 Total: 45.53 kcal Total: -67.03 -0.38 -67.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.262 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds