Wall clock time and date at job start Tue Mar 31 2020 11:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46855 * 2 1 4 4 H 1.08994 * 109.46990 * 54.85886 * 3 2 1 5 5 C 1.50696 * 109.46820 * 174.86028 * 3 2 1 6 6 H 1.07999 * 120.00319 * 119.99974 * 5 3 2 7 7 C 1.37878 * 120.00093 * 299.99854 * 5 3 2 8 8 N 1.31516 * 120.00212 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99931 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47220 * 89.99866 * 9 7 5 11 11 H 1.48501 * 109.47049 * 209.99925 * 9 7 5 12 12 H 1.48491 * 109.47116 * 329.99733 * 9 7 5 13 13 N 1.46904 * 109.47068 * 294.85843 * 3 2 1 14 14 C 1.46900 * 110.99581 * 154.53436 * 13 3 2 15 15 C 1.52999 * 109.46865 * 185.12512 * 14 13 3 16 16 H 1.08998 * 109.50707 * 54.92087 * 15 14 13 17 17 C 1.53126 * 109.50222 * 294.80098 * 15 14 13 18 18 C 1.53119 * 109.15984 * 182.40585 * 17 15 14 19 19 C 1.53028 * 109.27933 * 57.65400 * 18 17 15 20 20 N 1.46845 * 109.52850 * 300.82056 * 19 18 17 21 21 C 1.46896 * 111.00564 * 185.84077 * 20 19 18 22 22 C 1.50701 * 109.47130 * 45.78647 * 21 20 19 23 23 C 1.38227 * 120.00089 * 269.72882 * 22 21 20 24 24 C 1.38241 * 120.00011 * 179.76641 * 23 22 21 25 25 C 1.38229 * 119.99907 * 0.50821 * 24 23 22 26 26 C 1.38240 * 119.99993 * 359.74717 * 25 24 23 27 27 C 1.38233 * 119.99906 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.19494 * 61.73977 * 20 19 18 29 29 H 1.08995 * 109.47142 * 183.77403 * 1 2 3 30 30 H 1.08998 * 109.47026 * 303.77134 * 1 2 3 31 31 H 1.08993 * 109.47083 * 63.77137 * 1 2 3 32 32 H 1.08995 * 109.46958 * 240.00093 * 2 1 3 33 33 H 1.08994 * 109.47096 * 119.99734 * 2 1 3 34 34 H 0.96993 * 120.00188 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99735 * 278.48641 * 13 3 2 36 36 H 1.08999 * 109.47393 * 65.12269 * 14 13 3 37 37 H 1.09003 * 109.47277 * 305.12117 * 14 13 3 38 38 H 1.08998 * 109.52062 * 302.31087 * 17 15 14 39 39 H 1.09001 * 109.52015 * 62.50073 * 17 15 14 40 40 H 1.09001 * 109.50136 * 297.71283 * 18 17 15 41 41 H 1.09005 * 109.53318 * 177.61576 * 18 17 15 42 42 H 1.09000 * 109.46512 * 180.80077 * 19 18 17 43 43 H 1.09004 * 109.45419 * 60.83277 * 19 18 17 44 44 H 1.09000 * 109.47084 * 165.79028 * 21 20 19 45 45 H 1.09005 * 109.47049 * 285.78782 * 21 20 19 46 46 H 1.08002 * 120.00388 * 359.97438 * 23 22 21 47 47 H 1.08004 * 119.99936 * 180.23097 * 24 23 22 48 48 H 1.07998 * 120.00409 * 179.72457 * 25 24 23 49 49 H 1.07994 * 120.00435 * 179.97438 * 26 25 24 50 50 H 1.08003 * 120.00284 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46012 * 178.24780 * 28 20 19 52 52 H 1.08999 * 109.45694 * 58.27486 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6034 1.9822 0.8403 5 6 3.5416 1.4444 0.1273 6 1 4.1487 1.8884 -0.6478 7 6 4.1404 0.8795 1.2333 8 7 5.4509 0.8815 1.3446 9 14 3.0904 0.1110 2.5736 10 1 2.8703 -1.3253 2.2675 11 1 3.7847 0.2380 3.8801 12 1 1.7817 0.8095 2.6386 13 7 1.6543 2.0983 -1.2567 14 6 1.5642 3.5544 -1.0846 15 6 1.0384 4.1887 -2.3738 16 1 0.0918 3.7234 -2.6486 17 6 2.0568 3.9806 -3.4982 18 6 1.5508 4.6698 -4.7685 19 6 1.3236 6.1555 -4.4809 20 7 0.3416 6.3016 -3.3990 21 6 -0.0050 7.7136 -3.1894 22 6 -0.2606 8.3711 -4.5212 23 6 0.7786 8.9729 -5.2056 24 6 0.5451 9.5718 -6.4295 25 6 -0.7297 9.5780 -6.9639 26 6 -1.7700 8.9807 -6.2769 27 6 -1.5354 8.3768 -5.0558 28 6 0.8262 5.6885 -2.1557 29 1 -0.3633 -1.0254 0.0676 30 1 -0.3633 0.5713 0.8542 31 1 -0.3633 0.4542 -0.9218 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8721 0.4838 2.1225 35 1 2.2943 1.8608 -1.9997 36 1 2.5524 3.9554 -0.8591 37 1 0.8838 3.7819 -0.2640 38 1 3.0145 4.4117 -3.2067 39 1 2.1786 2.9139 -3.6864 40 1 0.6124 4.2121 -5.0816 41 1 2.2909 4.5615 -5.5614 42 1 0.9497 6.6464 -5.3794 43 1 2.2654 6.6154 -4.1811 44 1 -0.9017 7.7801 -2.5733 45 1 0.8195 8.2194 -2.6868 46 1 1.7738 8.9724 -4.7859 47 1 1.3579 10.0388 -6.9660 48 1 -0.9130 10.0497 -7.9179 49 1 -2.7661 8.9858 -6.6942 50 1 -2.3482 7.9105 -4.5188 51 1 0.0910 5.8401 -1.3654 52 1 1.7702 6.1507 -1.8670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390714569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:07 Heat of formation + Delta-G solvation = 16.808602 kcal Electronic energy + Delta-G solvation = -26636.684798 eV Core-core repulsion = 23214.045710 eV Total energy + Delta-G solvation = -3422.639088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04046 -38.63118 -36.51061 -34.45560 -32.49413 -31.83726 -31.23262 -31.11230 -29.95952 -26.96434 -26.44096 -24.47572 -23.02558 -22.82358 -22.37401 -21.70938 -20.44686 -19.79345 -19.36786 -17.01353 -16.93203 -16.05127 -15.64356 -15.49162 -15.16134 -14.87184 -14.32072 -14.18231 -13.93787 -13.74189 -13.60980 -13.55302 -13.00138 -12.92929 -12.76918 -12.62623 -12.56341 -12.07789 -11.93824 -11.89162 -11.53435 -11.35157 -11.23271 -11.16783 -11.00772 -10.88019 -10.61436 -10.51013 -10.26447 -10.04024 -9.92072 -9.70711 -9.40703 -9.19559 -9.12460 -9.00787 -8.57074 -8.28688 -7.30590 -6.12560 -4.13184 1.08786 1.17916 3.26352 3.36697 3.39395 3.46758 4.02021 4.37459 4.49846 4.61942 4.76859 4.87040 4.92012 5.01600 5.07174 5.10994 5.19020 5.21967 5.26963 5.43973 5.47396 5.48074 5.61284 5.66379 5.72887 5.77532 5.81396 5.87615 5.93761 5.98139 6.07753 6.08716 6.11157 6.21558 6.25750 6.27970 6.29993 6.39590 6.41603 6.46429 6.57891 6.72840 6.75272 6.76691 6.80847 7.00827 7.04775 7.09904 7.14410 7.30521 7.58181 8.07735 8.41057 8.51648 8.90230 9.51382 11.00434 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.002434 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.640193 B =11501.242741 C =11805.001748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.071 0.929 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.679 5.679 14 C 0.071 3.929 15 C -0.077 4.077 16 H 0.082 0.918 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.053 3.947 20 N -0.530 5.530 21 C 0.091 3.909 22 C -0.078 4.078 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.122 4.122 27 C -0.099 4.099 28 C 0.062 3.938 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.333 0.667 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.083 0.917 45 H 0.041 0.959 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.074 0.926 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.653 15.846 -14.115 24.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.089 0.911 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.309 5.309 14 C -0.059 4.059 15 C -0.096 4.096 16 H 0.101 0.899 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.075 4.075 20 N -0.254 5.254 21 C -0.036 4.036 22 C -0.078 4.078 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.066 4.066 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.150 0.850 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.092 0.908 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.598 15.444 -14.021 24.900 hybrid contribution 1.451 0.189 1.130 1.849 sum -12.147 15.633 -12.891 23.624 Atomic orbital electron populations 1.21717 0.97549 0.99096 1.01543 1.21811 0.93847 0.99403 1.00281 1.19568 0.94172 0.90591 0.88273 0.95148 1.21753 0.90623 1.38928 1.07005 0.91064 1.25018 0.94772 0.95332 0.97973 1.69918 1.08947 1.45146 1.29684 0.86803 0.80612 0.79880 0.80620 1.20469 1.22695 1.18939 1.60755 1.55043 1.06257 1.08814 1.21753 0.99029 0.89770 0.95370 1.21170 0.99758 0.93199 0.95504 0.89918 1.21632 0.98230 1.01025 0.94535 1.21570 1.01294 0.94564 0.97784 1.22214 0.93126 0.97312 0.94849 1.62055 1.42950 1.13296 1.07092 1.21094 1.01049 0.88001 0.93436 1.19799 0.93655 0.97850 0.96544 1.21108 0.98658 0.98157 0.95326 1.21113 0.97064 0.99930 0.95925 1.21146 0.93132 0.99970 0.99890 1.21164 0.99103 0.98417 0.95319 1.21060 0.96569 0.98443 0.95725 1.22129 0.98406 0.95303 0.90762 0.94962 0.94221 0.91953 0.92470 0.93847 0.92680 0.84953 0.95138 0.92218 0.92574 0.91133 0.91295 0.92000 0.90536 0.95341 0.89832 0.94048 0.86374 0.86191 0.86294 0.86136 0.85817 0.90802 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.76 37.16 0.36 -2.26 16 2 C -0.12 -2.52 5.11 -26.73 -0.14 -2.66 16 3 C 0.18 4.25 1.56 -68.86 -0.11 4.14 16 4 H 0.03 0.75 6.77 -51.93 -0.35 0.40 16 5 C -0.54 -14.95 9.03 -34.44 -0.31 -15.26 16 6 H 0.07 2.12 7.98 -52.49 -0.42 1.70 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.89 22.09 24.41 -169.99 -4.15 17.94 16 10 H -0.28 -6.74 6.83 56.52 0.39 -6.36 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 13 N -0.68 -13.36 5.73 -107.95 -0.62 -13.98 16 14 C 0.07 1.26 4.96 -3.82 -0.02 1.24 16 15 C -0.08 -1.11 2.56 -90.54 -0.23 -1.34 16 16 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 17 C -0.12 -1.61 5.00 -26.60 -0.13 -1.75 16 18 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 19 C 0.05 0.61 4.58 -3.84 -0.02 0.59 16 20 N -0.53 -6.22 4.80 -236.12 -1.13 -7.36 16 21 C 0.09 0.93 5.43 -4.98 -0.03 0.90 16 22 C -0.08 -0.76 4.11 -104.63 -0.43 -1.19 16 23 C -0.11 -1.05 7.82 -39.58 -0.31 -1.36 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.10 -0.92 9.70 -39.58 -0.38 -1.30 16 28 C 0.06 0.79 4.71 -3.83 -0.02 0.78 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.10 7.86 -51.93 -0.41 0.70 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.04 1.01 3.21 -51.93 -0.17 0.85 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.33 6.63 6.92 -39.29 -0.27 6.36 16 36 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 37 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.03 6.93 -51.93 -0.36 0.67 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.87 5.65 -51.93 -0.29 0.57 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 45 H 0.04 0.42 8.02 -51.93 -0.42 0.00 16 46 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 50 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 51 H 0.07 0.91 8.12 -51.93 -0.42 0.48 16 52 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -29.41 392.83 -11.89 -41.30 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -9.46 Total: 6.03 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.22 Total: -23.25 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.98 Total: -47.94 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.15 Total: 17.94 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.41 -11.89 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.104 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds