Wall clock time and date at job start Tue Mar 31 2020 11:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46855 * 2 1 4 4 H 1.08994 * 109.46990 * 54.85886 * 3 2 1 5 5 C 1.50696 * 109.46820 * 174.86028 * 3 2 1 6 6 H 1.07999 * 120.00319 * 119.99974 * 5 3 2 7 7 C 1.37878 * 120.00093 * 299.99854 * 5 3 2 8 8 N 1.31516 * 120.00212 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 119.99931 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.47220 * 89.99866 * 9 7 5 11 11 H 1.48501 * 109.47049 * 209.99925 * 9 7 5 12 12 H 1.48491 * 109.47116 * 329.99733 * 9 7 5 13 13 N 1.46904 * 109.47068 * 294.85843 * 3 2 1 14 14 C 1.46900 * 110.99581 * 154.53436 * 13 3 2 15 15 C 1.52999 * 109.46865 * 185.12512 * 14 13 3 16 16 H 1.08998 * 109.50707 * 54.92087 * 15 14 13 17 17 C 1.53126 * 109.50222 * 294.80098 * 15 14 13 18 18 C 1.53119 * 109.15984 * 182.40585 * 17 15 14 19 19 C 1.53028 * 109.27933 * 57.65400 * 18 17 15 20 20 N 1.46845 * 109.52850 * 300.82056 * 19 18 17 21 21 C 1.46896 * 111.00564 * 185.84077 * 20 19 18 22 22 C 1.50701 * 109.47130 * 45.78647 * 21 20 19 23 23 C 1.38227 * 120.00089 * 269.72882 * 22 21 20 24 24 C 1.38241 * 120.00011 * 179.76641 * 23 22 21 25 25 C 1.38229 * 119.99907 * 0.50821 * 24 23 22 26 26 C 1.38240 * 119.99993 * 359.74717 * 25 24 23 27 27 C 1.38233 * 119.99906 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.19494 * 61.73977 * 20 19 18 29 29 H 1.08995 * 109.47142 * 183.77403 * 1 2 3 30 30 H 1.08998 * 109.47026 * 303.77134 * 1 2 3 31 31 H 1.08993 * 109.47083 * 63.77137 * 1 2 3 32 32 H 1.08995 * 109.46958 * 240.00093 * 2 1 3 33 33 H 1.08994 * 109.47096 * 119.99734 * 2 1 3 34 34 H 0.96993 * 120.00188 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99735 * 278.48641 * 13 3 2 36 36 H 1.08999 * 109.47393 * 65.12269 * 14 13 3 37 37 H 1.09003 * 109.47277 * 305.12117 * 14 13 3 38 38 H 1.08998 * 109.52062 * 302.31087 * 17 15 14 39 39 H 1.09001 * 109.52015 * 62.50073 * 17 15 14 40 40 H 1.09001 * 109.50136 * 297.71283 * 18 17 15 41 41 H 1.09005 * 109.53318 * 177.61576 * 18 17 15 42 42 H 1.09000 * 109.46512 * 180.80077 * 19 18 17 43 43 H 1.09004 * 109.45419 * 60.83277 * 19 18 17 44 44 H 1.09000 * 109.47084 * 165.79028 * 21 20 19 45 45 H 1.09005 * 109.47049 * 285.78782 * 21 20 19 46 46 H 1.08002 * 120.00388 * 359.97438 * 23 22 21 47 47 H 1.08004 * 119.99936 * 180.23097 * 24 23 22 48 48 H 1.07998 * 120.00409 * 179.72457 * 25 24 23 49 49 H 1.07994 * 120.00435 * 179.97438 * 26 25 24 50 50 H 1.08003 * 120.00284 * 179.97438 * 27 26 25 51 51 H 1.09004 * 109.46012 * 178.24780 * 28 20 19 52 52 H 1.08999 * 109.45694 * 58.27486 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6034 1.9822 0.8403 5 6 3.5416 1.4444 0.1273 6 1 4.1487 1.8884 -0.6478 7 6 4.1404 0.8795 1.2333 8 7 5.4509 0.8815 1.3446 9 14 3.0904 0.1110 2.5736 10 1 2.8703 -1.3253 2.2675 11 1 3.7847 0.2380 3.8801 12 1 1.7817 0.8095 2.6386 13 7 1.6543 2.0983 -1.2567 14 6 1.5642 3.5544 -1.0846 15 6 1.0384 4.1887 -2.3738 16 1 0.0918 3.7234 -2.6486 17 6 2.0568 3.9806 -3.4982 18 6 1.5508 4.6698 -4.7685 19 6 1.3236 6.1555 -4.4809 20 7 0.3416 6.3016 -3.3990 21 6 -0.0050 7.7136 -3.1894 22 6 -0.2606 8.3711 -4.5212 23 6 0.7786 8.9729 -5.2056 24 6 0.5451 9.5718 -6.4295 25 6 -0.7297 9.5780 -6.9639 26 6 -1.7700 8.9807 -6.2769 27 6 -1.5354 8.3768 -5.0558 28 6 0.8262 5.6885 -2.1557 29 1 -0.3633 -1.0254 0.0676 30 1 -0.3633 0.5713 0.8542 31 1 -0.3633 0.4542 -0.9218 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.8721 0.4838 2.1225 35 1 2.2943 1.8608 -1.9997 36 1 2.5524 3.9554 -0.8591 37 1 0.8838 3.7819 -0.2640 38 1 3.0145 4.4117 -3.2067 39 1 2.1786 2.9139 -3.6864 40 1 0.6124 4.2121 -5.0816 41 1 2.2909 4.5615 -5.5614 42 1 0.9497 6.6464 -5.3794 43 1 2.2654 6.6154 -4.1811 44 1 -0.9017 7.7801 -2.5733 45 1 0.8195 8.2194 -2.6868 46 1 1.7738 8.9724 -4.7859 47 1 1.3579 10.0388 -6.9660 48 1 -0.9130 10.0497 -7.9179 49 1 -2.7661 8.9858 -6.6942 50 1 -2.3482 7.9105 -4.5188 51 1 0.0910 5.8401 -1.3654 52 1 1.7702 6.1507 -1.8670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390714569.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:06 Heat of formation + Delta-G solvation = -0.337152 kcal Electronic energy + Delta-G solvation = -26637.428294 eV Core-core repulsion = 23214.045710 eV Total energy + Delta-G solvation = -3423.382583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86541 -39.58124 -38.10682 -35.67328 -34.22808 -33.43508 -32.10880 -31.76724 -31.22258 -28.78197 -27.30959 -25.89399 -24.27771 -23.88002 -23.44737 -22.67760 -21.60940 -21.38247 -20.52265 -19.09313 -17.59766 -17.11222 -17.01160 -16.55776 -16.22966 -16.04700 -15.57752 -15.36521 -15.13704 -15.06333 -14.77684 -14.75964 -14.34293 -14.20265 -13.88802 -13.78567 -13.49845 -13.48806 -13.37650 -13.06703 -12.96559 -12.84311 -12.54584 -12.33649 -12.14569 -12.02545 -11.86307 -11.84476 -11.64698 -11.54662 -11.30993 -11.19888 -11.14019 -11.07523 -10.67062 -9.76762 -9.70413 -9.21501 -9.05322 -8.34479 -6.39248 0.43239 0.54010 1.29225 1.33870 1.44771 2.28842 2.72570 3.01126 3.14632 3.58696 3.77164 3.85146 3.95320 3.99157 4.04273 4.19049 4.30878 4.32361 4.39321 4.40033 4.46903 4.50367 4.54939 4.60694 4.64209 4.66430 4.70986 4.72127 4.76855 4.83966 4.88085 4.95325 4.99614 5.04681 5.13495 5.14713 5.16771 5.20203 5.23827 5.32281 5.39112 5.46298 5.48888 5.58533 5.59622 5.65687 5.66159 5.73465 6.06084 6.10902 6.12936 6.16923 6.42160 6.64060 6.80489 7.29865 8.81854 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026568 B = 0.002434 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.640193 B =11501.242741 C =11805.001748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C 0.189 3.811 4 H 0.024 0.976 5 C -0.544 4.544 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.301 1.301 12 H -0.247 1.247 13 N -0.666 5.666 14 C 0.074 3.926 15 C -0.063 4.063 16 H 0.083 0.917 17 C -0.115 4.115 18 C -0.108 4.108 19 C 0.058 3.942 20 N -0.531 5.531 21 C 0.093 3.907 22 C -0.091 4.091 23 C -0.125 4.125 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.111 4.111 28 C 0.067 3.933 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.331 0.669 36 H 0.002 0.998 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.091 0.909 45 H 0.039 0.961 46 H 0.118 0.882 47 H 0.136 0.864 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.129 0.871 51 H 0.082 0.918 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 16.210 -14.963 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.155 4.155 3 C 0.078 3.922 4 H 0.042 0.958 5 C -0.583 4.583 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.778 3.222 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.170 1.170 13 N -0.295 5.295 14 C -0.056 4.056 15 C -0.083 4.083 16 H 0.102 0.898 17 C -0.152 4.152 18 C -0.146 4.146 19 C -0.070 4.070 20 N -0.256 5.256 21 C -0.034 4.034 22 C -0.091 4.091 23 C -0.144 4.144 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.145 4.145 27 C -0.129 4.129 28 C -0.061 4.061 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.021 0.979 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.041 0.959 44 H 0.109 0.891 45 H 0.058 0.942 46 H 0.136 0.864 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.147 0.853 51 H 0.101 0.899 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -16.356 15.820 -14.891 27.195 hybrid contribution 2.356 0.168 1.288 2.690 sum -14.000 15.988 -13.604 25.232 Atomic orbital electron populations 1.21626 0.94451 1.00841 1.02083 1.21749 0.96573 0.97558 0.99590 1.19451 0.91049 0.92169 0.89486 0.95838 1.22070 0.92929 1.37568 1.05693 0.95042 1.25876 0.95833 0.96117 1.00581 1.70065 1.10962 1.46964 1.30777 0.85808 0.79465 0.79653 0.77230 1.19157 1.22921 1.17047 1.60792 1.54131 1.07343 1.07209 1.21792 0.97752 0.88583 0.97472 1.20999 0.99431 0.94136 0.93698 0.89846 1.21590 0.97511 1.00620 0.95518 1.21524 1.01535 0.94624 0.96870 1.22168 0.92932 0.96837 0.95074 1.62051 1.42614 1.14511 1.06381 1.21107 1.01207 0.86909 0.94152 1.19800 0.94222 0.98642 0.96477 1.21215 0.98641 0.98616 0.95907 1.21378 0.97954 0.99656 0.95677 1.21469 0.92833 0.99484 1.00655 1.21448 1.00218 0.97870 0.94967 1.21223 0.96496 0.98843 0.96343 1.22016 0.98315 0.94035 0.91723 0.92602 0.93949 0.91197 0.92746 0.95028 0.92618 0.85165 0.97921 0.91888 0.94068 0.92005 0.91159 0.90826 0.89870 0.95860 0.89102 0.94247 0.86384 0.84572 0.84157 0.84252 0.85319 0.89946 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 9.76 71.98 0.70 -3.78 16 2 C -0.12 -4.90 5.11 30.60 0.16 -4.75 16 3 C 0.19 8.68 1.56 44.17 0.07 8.75 16 4 H 0.02 1.13 6.77 -2.39 -0.02 1.12 16 5 C -0.54 -30.69 9.03 25.60 0.23 -30.46 16 6 H 0.03 1.97 7.98 -2.91 -0.02 1.95 16 7 C 0.01 0.81 5.45 84.65 0.46 1.27 16 8 N -0.95 -59.49 13.96 21.45 0.30 -59.19 16 9 Si 0.95 45.44 24.41 68.60 1.67 47.11 16 10 H -0.27 -12.10 6.83 99.48 0.68 -11.42 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 13 N -0.67 -26.16 5.73 -495.45 -2.84 -28.99 16 14 C 0.07 2.65 4.96 86.30 0.43 3.07 16 15 C -0.06 -1.80 2.56 -10.74 -0.03 -1.83 16 16 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 17 C -0.11 -3.19 5.00 30.68 0.15 -3.04 16 18 C -0.11 -2.48 6.09 30.64 0.19 -2.29 16 19 C 0.06 1.28 4.58 86.32 0.40 1.67 16 20 N -0.53 -11.94 4.80 -900.94 -4.32 -16.26 16 21 C 0.09 1.80 5.43 85.56 0.46 2.26 16 22 C -0.09 -1.67 4.11 -19.87 -0.08 -1.75 16 23 C -0.13 -2.17 7.82 22.27 0.17 -2.00 16 24 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 25 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.11 -1.86 9.70 22.27 0.22 -1.65 16 28 C 0.07 1.69 4.71 86.33 0.41 2.10 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 32 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.40 3.21 -2.39 -0.01 1.40 16 34 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 35 H 0.33 13.41 6.92 -89.69 -0.62 12.79 16 36 H 0.00 0.10 8.10 -2.39 -0.02 0.08 16 37 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.81 6.93 -2.39 -0.02 1.80 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.08 1.77 5.65 -2.39 -0.01 1.76 16 43 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 44 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 45 H 0.04 0.77 8.02 -2.38 -0.02 0.75 16 46 H 0.12 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 48 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 50 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 51 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 52 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -64.07 392.83 -0.42 -64.49 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.16 Total: 30.05 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 4.61 Total: -37.20 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -6.86 Total: -104.45 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.67 Total: 47.11 kcal Total: -64.07 -0.42 -64.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390714569.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.148 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds