Wall clock time and date at job start Tue Mar 31 2020 11:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 H 1.09001 * 109.46922 * 181.78230 * 3 2 1 5 5 C 1.50696 * 109.47318 * 61.77849 * 3 2 1 6 6 H 1.08000 * 120.00211 * 244.98415 * 5 3 2 7 7 C 1.37881 * 120.00030 * 64.97818 * 5 3 2 8 8 N 1.31514 * 119.99955 * 9.70652 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 189.69941 * 7 5 3 10 10 H 1.48497 * 109.47510 * 270.00147 * 9 7 5 11 11 H 1.48498 * 109.47275 * 30.00693 * 9 7 5 12 12 H 1.48507 * 109.46976 * 150.00251 * 9 7 5 13 13 N 1.46900 * 109.47052 * 301.77982 * 3 2 1 14 14 C 1.46903 * 110.99741 * 274.05902 * 13 3 2 15 15 C 1.53001 * 109.46845 * 184.32295 * 14 13 3 16 16 C 1.53120 * 109.52268 * 294.68232 * 15 14 13 17 17 C 1.53043 * 109.27751 * 182.44245 * 16 15 14 18 18 N 1.46841 * 109.52323 * 59.18101 * 17 16 15 19 19 C 1.46900 * 111.00264 * 174.16053 * 18 17 16 20 20 C 1.50703 * 109.46863 * 294.21250 * 19 18 17 21 21 C 1.38234 * 119.99674 * 269.72099 * 20 19 18 22 22 C 1.38233 * 120.00187 * 179.79041 * 21 20 19 23 23 C 1.38242 * 119.99545 * 0.43902 * 22 21 20 24 24 C 1.38234 * 120.00374 * 359.81594 * 23 22 21 25 25 C 1.38228 * 120.00218 * 89.99732 * 20 19 18 26 26 C 1.46855 * 111.19817 * 298.25817 * 18 17 16 27 27 C 1.53028 * 109.52226 * 61.74180 * 26 18 17 28 28 H 1.09001 * 109.46907 * 64.52476 * 1 2 3 29 29 H 1.09001 * 109.47112 * 184.52232 * 1 2 3 30 30 H 1.08995 * 109.47056 * 304.52328 * 1 2 3 31 31 H 1.08993 * 109.46763 * 239.99837 * 2 1 3 32 32 H 1.08998 * 109.46913 * 119.99879 * 2 1 3 33 33 H 0.97006 * 119.99673 * 357.00630 * 8 7 5 34 34 H 1.00900 * 111.00041 * 150.10339 * 13 3 2 35 35 H 1.08997 * 109.47086 * 304.31742 * 14 13 3 36 36 H 1.08996 * 109.47190 * 64.32605 * 14 13 3 37 37 H 1.08996 * 109.52460 * 54.87566 * 15 14 13 38 38 H 1.09000 * 109.50564 * 302.38522 * 16 15 14 39 39 H 1.09000 * 109.50463 * 62.50292 * 16 15 14 40 40 H 1.08998 * 109.46006 * 299.16156 * 17 16 15 41 41 H 1.08999 * 109.44999 * 179.18753 * 17 16 15 42 42 H 1.09001 * 109.46911 * 54.20365 * 19 18 17 43 43 H 1.08992 * 109.47258 * 174.20871 * 19 18 17 44 44 H 1.08001 * 120.00411 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00609 * 180.28001 * 22 21 20 46 46 H 1.08001 * 119.99687 * 179.83161 * 23 22 21 47 47 H 1.07992 * 120.00478 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.00641 * 359.97438 * 25 20 19 49 49 H 1.08997 * 109.45840 * 301.72461 * 26 18 17 50 50 H 1.08994 * 109.45107 * 181.75653 * 26 18 17 51 51 H 1.09007 * 109.50392 * 180.88030 * 27 26 18 52 52 H 1.09000 * 109.50709 * 60.76603 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0320 5 6 1.5740 2.1401 1.2519 6 1 0.8860 2.9698 1.1835 7 6 2.0260 1.7191 2.4846 8 7 3.0028 0.8419 2.5624 9 14 1.2509 2.3946 4.0442 10 1 1.9803 3.6157 4.4707 11 1 -0.1713 2.7331 3.7836 12 1 1.3275 1.3718 5.1181 13 7 1.5155 2.1473 -1.1774 14 6 2.3775 1.9316 -2.3472 15 6 1.8608 2.7649 -3.5218 16 6 0.4811 2.2529 -3.9447 17 6 -0.0036 3.0500 -5.1579 18 7 0.9542 2.8965 -6.2604 19 6 0.4535 3.5342 -7.4854 20 6 -0.7744 2.8044 -7.9657 21 6 -0.6495 1.7485 -8.8492 22 6 -1.7754 1.0763 -9.2865 23 6 -3.0270 1.4657 -8.8473 24 6 -3.1524 2.5249 -7.9680 25 6 -2.0260 3.1944 -7.5274 26 6 2.2746 3.4246 -5.8940 27 6 2.8272 2.6388 -4.7029 28 1 -0.3633 0.4420 -0.9278 29 1 -0.3633 -1.0245 0.0810 30 1 -0.3633 0.5824 0.8467 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3760 0.4586 1.7532 34 1 1.4019 3.1319 -0.9885 35 1 3.3970 2.2339 -2.1080 36 1 2.3654 0.8758 -2.6177 37 1 1.7864 3.8101 -3.2221 38 1 0.5492 1.1970 -4.2065 39 1 -0.2221 2.3796 -3.1215 40 1 -0.0848 4.1037 -4.8913 41 1 -0.9794 2.6781 -5.4702 42 1 0.1999 4.5734 -7.2764 43 1 1.2236 3.4959 -8.2557 44 1 0.3280 1.4469 -9.1955 45 1 -1.6775 0.2485 -9.9732 46 1 -3.9069 0.9422 -9.1911 47 1 -4.1302 2.8294 -7.6253 48 1 -2.1240 4.0219 -6.8403 49 1 2.1827 4.4766 -5.6241 50 1 2.9531 3.3250 -6.7412 51 1 3.8003 3.0412 -4.4213 52 1 2.9323 1.5890 -4.9766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397611311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:10 Heat of formation + Delta-G solvation = 6.170933 kcal Electronic energy + Delta-G solvation = -26655.375004 eV Core-core repulsion = 23232.274632 eV Total energy + Delta-G solvation = -3423.100372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91619 -38.67837 -36.60398 -34.64175 -32.45308 -31.24171 -31.17708 -30.62898 -30.20476 -27.21829 -25.50251 -23.90571 -23.44979 -23.18599 -22.53456 -21.49719 -20.93953 -19.57119 -19.21034 -16.97505 -16.93007 -16.03036 -15.59198 -15.49316 -14.70641 -14.58164 -14.37611 -14.21932 -13.95441 -13.69189 -13.59512 -13.42411 -13.18564 -13.02024 -12.69764 -12.61843 -12.23282 -12.09747 -11.96946 -11.53667 -11.42766 -11.23303 -11.15319 -11.09221 -11.04156 -10.78028 -10.39753 -10.24924 -10.23724 -10.09139 -9.94055 -9.81020 -9.60948 -9.08245 -8.97889 -8.55348 -8.37816 -8.20220 -7.29644 -6.34664 -4.04166 1.13648 1.22146 3.42652 3.47809 3.48272 3.62851 4.01826 4.51944 4.53374 4.63335 4.81073 4.84765 4.89091 4.91705 4.97469 5.11281 5.25662 5.29013 5.30424 5.38917 5.44757 5.48571 5.51893 5.59849 5.64493 5.79757 5.81139 5.85063 5.86683 6.00267 6.13179 6.17228 6.26231 6.26536 6.32131 6.37165 6.39533 6.43210 6.46959 6.55853 6.67140 6.71194 6.80125 6.99911 7.01893 7.06132 7.11900 7.28957 7.53464 7.57400 7.93345 8.15262 8.56511 8.63202 8.90097 9.66797 11.02914 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.002506 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.843451 B =11172.406339 C =11723.461685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.204 3.796 4 H -0.010 1.010 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 1.067 2.933 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.677 5.677 14 C 0.066 3.934 15 C -0.084 4.084 16 C -0.098 4.098 17 C 0.051 3.949 18 N -0.531 5.531 19 C 0.092 3.908 20 C -0.074 4.074 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.113 4.113 26 C 0.060 3.940 27 C -0.111 4.111 28 H 0.047 0.953 29 H 0.016 0.984 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.271 0.729 34 H 0.331 0.669 35 H 0.016 0.984 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.031 0.969 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.109 4.445 -23.666 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C 0.096 3.904 4 H 0.008 0.992 5 C -0.633 4.633 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.896 3.104 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.307 5.307 14 C -0.064 4.064 15 C -0.103 4.103 16 C -0.136 4.136 17 C -0.076 4.076 18 N -0.256 5.256 19 C -0.035 4.035 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.068 4.068 27 C -0.149 4.149 28 H 0.066 0.934 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.034 0.966 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.046 0.954 41 H 0.094 0.906 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.384 3.390 -22.247 23.684 hybrid contribution 0.627 1.387 -1.268 1.981 sum -6.757 4.777 -23.515 24.928 Atomic orbital electron populations 1.21417 0.96536 0.97741 1.01905 1.21474 0.96230 0.98378 0.98240 1.19223 0.92081 0.91297 0.87804 0.99222 1.21977 1.31044 1.18449 0.91829 0.92915 1.25699 0.94828 0.96089 1.01603 1.70767 1.22157 1.28958 1.32835 0.83573 0.75576 0.75866 0.75377 1.21703 1.21375 1.21028 1.60590 1.49569 1.15643 1.04929 1.21951 0.93963 0.99207 0.91264 1.21209 0.95286 0.99405 0.94419 1.21492 0.96643 0.99671 0.95767 1.22269 0.95822 0.98286 0.91231 1.61964 1.02865 1.57290 1.03498 1.21026 0.94551 0.94896 0.93030 1.19740 0.94139 0.96691 0.96896 1.21008 0.98596 0.95030 0.97145 1.21150 0.92693 0.99843 1.00339 1.21146 0.97491 0.97386 0.98080 1.21123 0.98490 0.96370 0.97931 1.21081 0.92234 1.00201 0.99689 1.22064 0.90132 0.96400 0.98191 1.21610 0.98115 1.01129 0.94040 0.93352 0.96480 0.92252 0.96356 0.92504 0.91792 0.85207 0.96622 0.92038 0.92096 0.91617 0.90161 0.95351 0.90600 0.94187 0.90115 0.86083 0.86196 0.86293 0.86165 0.86365 0.95109 0.91087 0.91768 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 9.52 37.16 0.35 -2.27 16 2 C -0.10 -2.49 5.49 -26.73 -0.15 -2.64 16 3 C 0.20 5.05 1.93 -68.87 -0.13 4.92 16 4 H -0.01 -0.27 7.08 -51.93 -0.37 -0.63 16 5 C -0.59 -16.15 7.24 -34.44 -0.25 -16.40 16 6 H 0.05 1.44 7.67 -52.49 -0.40 1.04 16 7 C 0.02 0.63 5.18 -17.82 -0.09 0.54 16 8 N -0.91 -27.12 13.04 55.43 0.72 -26.39 16 9 Si 1.07 25.06 29.91 -169.99 -5.09 19.98 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -13.98 5.10 -107.95 -0.55 -14.53 16 14 C 0.07 1.17 4.93 -3.82 -0.02 1.15 16 15 C -0.08 -1.20 2.36 -90.49 -0.21 -1.41 16 16 C -0.10 -1.38 5.24 -26.65 -0.14 -1.52 16 17 C 0.05 0.62 5.16 -3.83 -0.02 0.60 16 18 N -0.53 -5.98 4.65 -236.12 -1.10 -7.08 16 19 C 0.09 0.88 5.12 -4.97 -0.03 0.86 16 20 C -0.07 -0.74 4.89 -104.63 -0.51 -1.25 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -1.09 7.88 -39.58 -0.31 -1.41 16 26 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 27 C -0.11 -1.35 5.38 -26.65 -0.14 -1.49 16 28 H 0.05 1.01 7.71 -51.93 -0.40 0.61 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 1.41 7.12 -51.93 -0.37 1.04 16 31 H 0.02 0.40 7.64 -51.93 -0.40 0.01 16 32 H 0.06 1.49 6.37 -51.93 -0.33 1.16 16 33 H 0.27 8.07 6.03 -40.82 -0.25 7.82 16 34 H 0.33 6.87 8.16 -39.29 -0.32 6.55 16 35 H 0.02 0.29 7.95 -51.93 -0.41 -0.12 16 36 H 0.06 1.13 7.64 -51.93 -0.40 0.74 16 37 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.24 7.84 -51.93 -0.41 0.84 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.92 5.75 -51.93 -0.30 0.62 16 42 H 0.04 0.37 8.07 -51.93 -0.42 -0.05 16 43 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.12 1.04 7.95 -52.49 -0.42 0.62 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 397.75 15.07 5.99 5.99 Total: -1.00 -29.18 397.75 -12.72 -41.91 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -9.46 Total: 5.57 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -3.25 Total: -25.45 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: -0.92 Total: -48.00 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.98 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.18 -12.72 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.078 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds