Wall clock time and date at job start Tue Mar 31 2020 11:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 H 1.09001 * 109.46922 * 181.78230 * 3 2 1 5 5 C 1.50696 * 109.47318 * 61.77849 * 3 2 1 6 6 H 1.08000 * 120.00211 * 244.98415 * 5 3 2 7 7 C 1.37881 * 120.00030 * 64.97818 * 5 3 2 8 8 N 1.31514 * 119.99955 * 9.70652 * 7 5 3 9 9 Si 1.86796 * 120.00116 * 189.69941 * 7 5 3 10 10 H 1.48497 * 109.47510 * 270.00147 * 9 7 5 11 11 H 1.48498 * 109.47275 * 30.00693 * 9 7 5 12 12 H 1.48507 * 109.46976 * 150.00251 * 9 7 5 13 13 N 1.46900 * 109.47052 * 301.77982 * 3 2 1 14 14 C 1.46903 * 110.99741 * 274.05902 * 13 3 2 15 15 C 1.53001 * 109.46845 * 184.32295 * 14 13 3 16 16 C 1.53120 * 109.52268 * 294.68232 * 15 14 13 17 17 C 1.53043 * 109.27751 * 182.44245 * 16 15 14 18 18 N 1.46841 * 109.52323 * 59.18101 * 17 16 15 19 19 C 1.46900 * 111.00264 * 174.16053 * 18 17 16 20 20 C 1.50703 * 109.46863 * 294.21250 * 19 18 17 21 21 C 1.38234 * 119.99674 * 269.72099 * 20 19 18 22 22 C 1.38233 * 120.00187 * 179.79041 * 21 20 19 23 23 C 1.38242 * 119.99545 * 0.43902 * 22 21 20 24 24 C 1.38234 * 120.00374 * 359.81594 * 23 22 21 25 25 C 1.38228 * 120.00218 * 89.99732 * 20 19 18 26 26 C 1.46855 * 111.19817 * 298.25817 * 18 17 16 27 27 C 1.53028 * 109.52226 * 61.74180 * 26 18 17 28 28 H 1.09001 * 109.46907 * 64.52476 * 1 2 3 29 29 H 1.09001 * 109.47112 * 184.52232 * 1 2 3 30 30 H 1.08995 * 109.47056 * 304.52328 * 1 2 3 31 31 H 1.08993 * 109.46763 * 239.99837 * 2 1 3 32 32 H 1.08998 * 109.46913 * 119.99879 * 2 1 3 33 33 H 0.97006 * 119.99673 * 357.00630 * 8 7 5 34 34 H 1.00900 * 111.00041 * 150.10339 * 13 3 2 35 35 H 1.08997 * 109.47086 * 304.31742 * 14 13 3 36 36 H 1.08996 * 109.47190 * 64.32605 * 14 13 3 37 37 H 1.08996 * 109.52460 * 54.87566 * 15 14 13 38 38 H 1.09000 * 109.50564 * 302.38522 * 16 15 14 39 39 H 1.09000 * 109.50463 * 62.50292 * 16 15 14 40 40 H 1.08998 * 109.46006 * 299.16156 * 17 16 15 41 41 H 1.08999 * 109.44999 * 179.18753 * 17 16 15 42 42 H 1.09001 * 109.46911 * 54.20365 * 19 18 17 43 43 H 1.08992 * 109.47258 * 174.20871 * 19 18 17 44 44 H 1.08001 * 120.00411 * 359.97438 * 21 20 19 45 45 H 1.07994 * 120.00609 * 180.28001 * 22 21 20 46 46 H 1.08001 * 119.99687 * 179.83161 * 23 22 21 47 47 H 1.07992 * 120.00478 * 179.97438 * 24 23 22 48 48 H 1.08002 * 120.00641 * 359.97438 * 25 20 19 49 49 H 1.08997 * 109.45840 * 301.72461 * 26 18 17 50 50 H 1.08994 * 109.45107 * 181.75653 * 26 18 17 51 51 H 1.09007 * 109.50392 * 180.88030 * 27 26 18 52 52 H 1.09000 * 109.50709 * 60.76603 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1296 1.4427 -0.0320 5 6 1.5740 2.1401 1.2519 6 1 0.8860 2.9698 1.1835 7 6 2.0260 1.7191 2.4846 8 7 3.0028 0.8419 2.5624 9 14 1.2509 2.3946 4.0442 10 1 1.9803 3.6157 4.4707 11 1 -0.1713 2.7331 3.7836 12 1 1.3275 1.3718 5.1181 13 7 1.5155 2.1473 -1.1774 14 6 2.3775 1.9316 -2.3472 15 6 1.8608 2.7649 -3.5218 16 6 0.4811 2.2529 -3.9447 17 6 -0.0036 3.0500 -5.1579 18 7 0.9542 2.8965 -6.2604 19 6 0.4535 3.5342 -7.4854 20 6 -0.7744 2.8044 -7.9657 21 6 -0.6495 1.7485 -8.8492 22 6 -1.7754 1.0763 -9.2865 23 6 -3.0270 1.4657 -8.8473 24 6 -3.1524 2.5249 -7.9680 25 6 -2.0260 3.1944 -7.5274 26 6 2.2746 3.4246 -5.8940 27 6 2.8272 2.6388 -4.7029 28 1 -0.3633 0.4420 -0.9278 29 1 -0.3633 -1.0245 0.0810 30 1 -0.3633 0.5824 0.8467 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3760 0.4586 1.7532 34 1 1.4019 3.1319 -0.9885 35 1 3.3970 2.2339 -2.1080 36 1 2.3654 0.8758 -2.6177 37 1 1.7864 3.8101 -3.2221 38 1 0.5492 1.1970 -4.2065 39 1 -0.2221 2.3796 -3.1215 40 1 -0.0848 4.1037 -4.8913 41 1 -0.9794 2.6781 -5.4702 42 1 0.1999 4.5734 -7.2764 43 1 1.2236 3.4959 -8.2557 44 1 0.3280 1.4469 -9.1955 45 1 -1.6775 0.2485 -9.9732 46 1 -3.9069 0.9422 -9.1911 47 1 -4.1302 2.8294 -7.6253 48 1 -2.1240 4.0219 -6.8403 49 1 2.1827 4.4766 -5.6241 50 1 2.9531 3.3250 -6.7412 51 1 3.8003 3.0412 -4.4213 52 1 2.9323 1.5890 -4.9766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397611311.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:09 Heat of formation + Delta-G solvation = -8.844315 kcal Electronic energy + Delta-G solvation = -26656.026114 eV Core-core repulsion = 23232.274632 eV Total energy + Delta-G solvation = -3423.751482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73138 -39.61265 -38.27540 -35.96198 -34.01995 -32.72117 -31.94880 -31.63041 -31.45197 -28.58995 -26.99581 -25.49017 -25.04074 -24.17070 -23.28524 -22.63245 -21.76749 -21.15712 -20.66418 -18.90700 -17.63538 -17.02399 -16.38754 -16.35001 -16.08857 -16.00605 -15.73973 -15.49324 -15.37993 -15.07082 -14.96868 -14.42978 -14.34625 -14.23980 -13.81410 -13.56699 -13.52795 -13.35331 -13.11206 -13.02235 -12.97424 -12.64994 -12.56258 -12.12957 -12.01938 -11.99749 -11.94523 -11.84098 -11.78358 -11.64754 -11.51369 -11.19967 -11.10789 -10.63332 -10.31748 -9.75870 -9.67267 -9.21915 -9.08776 -8.58466 -6.28382 0.45907 0.55092 1.53262 1.61962 1.79243 2.57233 2.75588 3.22062 3.22379 3.48096 3.79598 3.82278 3.89092 3.99259 4.10568 4.20029 4.28133 4.34026 4.37187 4.40264 4.46006 4.48356 4.54806 4.58952 4.61425 4.65728 4.71682 4.73861 4.80911 4.81945 4.89589 4.94008 4.98959 5.03637 5.10364 5.15720 5.19738 5.20813 5.25226 5.37727 5.39674 5.51113 5.56334 5.60588 5.66792 5.69722 5.73979 5.91373 6.10252 6.12211 6.14847 6.20292 6.51069 6.62824 6.85360 7.51350 8.79116 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020055 B = 0.002506 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.843451 B =11172.406339 C =11723.461685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.208 3.792 4 H -0.045 1.045 5 C -0.598 4.598 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.937 5.937 9 Si 1.112 2.888 10 H -0.277 1.277 11 H -0.270 1.270 12 H -0.286 1.286 13 N -0.668 5.668 14 C 0.071 3.929 15 C -0.074 4.074 16 C -0.091 4.091 17 C 0.061 3.939 18 N -0.540 5.540 19 C 0.096 3.904 20 C -0.087 4.087 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.126 4.126 26 C 0.063 3.937 27 C -0.106 4.106 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.258 0.742 34 H 0.331 0.669 35 H 0.005 0.995 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.122 0.878 49 H 0.035 0.965 50 H 0.090 0.910 51 H 0.070 0.930 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 5.187 -25.156 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.099 3.901 4 H -0.028 1.028 5 C -0.636 4.636 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.574 5.574 9 Si 0.935 3.065 10 H -0.203 1.203 11 H -0.195 1.195 12 H -0.212 1.212 13 N -0.298 5.298 14 C -0.059 4.059 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.067 4.067 18 N -0.265 5.265 19 C -0.031 4.031 20 C -0.088 4.088 21 C -0.130 4.130 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.064 4.064 27 C -0.144 4.144 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.147 0.853 45 H 0.155 0.845 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.140 0.860 49 H 0.053 0.947 50 H 0.109 0.891 51 H 0.089 0.911 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.557 4.145 -23.774 25.604 hybrid contribution 0.994 1.130 -0.889 1.748 sum -7.563 5.274 -24.662 26.330 Atomic orbital electron populations 1.21293 0.94782 0.98882 1.01485 1.21366 0.97630 0.97444 0.97380 1.19062 0.89965 0.92263 0.88797 1.02807 1.22251 1.30303 1.18186 0.92845 0.93101 1.27049 0.94558 0.95814 1.05059 1.70886 1.23779 1.30597 1.32153 0.82995 0.75826 0.75676 0.72038 1.20295 1.19516 1.21220 1.60537 1.49748 1.15267 1.04256 1.21971 0.93084 0.99496 0.91349 1.21113 0.95966 0.98468 0.93749 1.21374 0.96028 0.99231 0.96271 1.22102 0.96005 0.97885 0.90694 1.61937 1.02862 1.57988 1.03692 1.21046 0.94854 0.94853 0.92380 1.19865 0.94377 0.97161 0.97393 1.21217 0.99334 0.95144 0.97303 1.21441 0.92630 1.00248 1.00505 1.21455 0.98261 0.97331 0.97789 1.21396 0.99080 0.96465 0.97984 1.21239 0.92533 1.00614 1.00053 1.22052 0.90187 0.96108 0.98058 1.21563 0.97900 1.01219 0.93755 0.92342 0.94319 0.94176 0.95251 0.95266 0.93205 0.85217 0.97721 0.92808 0.92028 0.92920 0.91760 0.95077 0.90610 0.93764 0.88786 0.85290 0.84466 0.84435 0.84732 0.85993 0.94705 0.89137 0.91103 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.52 71.98 0.69 -3.97 16 2 C -0.10 -4.81 5.49 30.60 0.17 -4.64 16 3 C 0.21 10.52 1.93 44.17 0.09 10.61 16 4 H -0.05 -2.59 7.08 -2.39 -0.02 -2.61 16 5 C -0.60 -32.79 7.24 25.60 0.19 -32.61 16 6 H 0.05 2.77 7.67 -2.91 -0.02 2.74 16 7 C -0.03 -1.47 5.18 84.66 0.44 -1.03 16 8 N -0.94 -57.02 13.04 21.45 0.28 -56.74 16 9 Si 1.11 50.22 29.91 68.60 2.05 52.27 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.67 -27.80 5.10 -495.45 -2.53 -30.32 16 14 C 0.07 2.52 4.93 86.30 0.43 2.94 16 15 C -0.07 -2.05 2.36 -10.71 -0.03 -2.08 16 16 C -0.09 -2.50 5.24 30.65 0.16 -2.34 16 17 C 0.06 1.39 5.16 86.33 0.45 1.84 16 18 N -0.54 -11.12 4.65 -900.95 -4.19 -15.31 16 19 C 0.10 1.63 5.12 85.56 0.44 2.07 16 20 C -0.09 -1.61 4.89 -19.87 -0.10 -1.71 16 21 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 22 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 23 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 25 C -0.13 -2.26 7.88 22.27 0.18 -2.09 16 26 C 0.06 1.21 5.46 86.32 0.47 1.68 16 27 C -0.11 -2.44 5.38 30.64 0.16 -2.27 16 28 H 0.06 2.39 7.71 -2.39 -0.02 2.37 16 29 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.04 1.87 7.12 -2.39 -0.02 1.86 16 31 H 0.03 1.32 7.64 -2.39 -0.02 1.30 16 32 H 0.03 1.56 6.37 -2.39 -0.02 1.54 16 33 H 0.26 15.97 6.03 -92.70 -0.56 15.41 16 34 H 0.33 13.77 8.16 -89.69 -0.73 13.04 16 35 H 0.00 0.18 7.95 -2.39 -0.02 0.16 16 36 H 0.05 2.00 7.64 -2.39 -0.02 1.98 16 37 H 0.06 1.73 8.12 -2.39 -0.02 1.71 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.96 7.84 -2.39 -0.02 1.94 16 40 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 1.75 5.75 -2.39 -0.01 1.74 16 42 H 0.04 0.72 8.07 -2.39 -0.02 0.70 16 43 H 0.09 1.34 7.93 -2.39 -0.02 1.32 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.72 8.06 -2.91 -0.02 1.69 16 48 H 0.12 2.00 7.95 -2.91 -0.02 1.98 16 49 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 1.42 8.01 -2.39 -0.02 1.40 16 51 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 52 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -62.97 397.75 0.57 -62.40 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.34 Total: 28.63 kcal Atomic # 6 Polarization: -45.54 SS G_CDS: 4.61 Total: -40.93 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -6.43 Total: -102.38 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -62.97 0.57 -62.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611311.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.557 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds