Wall clock time and date at job start Tue Mar 31 2020 11:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47216 * 2 1 4 4 H 1.08992 * 109.46658 * 54.86062 * 3 2 1 5 5 C 1.50698 * 109.47281 * 174.86525 * 3 2 1 6 6 H 1.08000 * 120.00085 * 120.00161 * 5 3 2 7 7 C 1.37878 * 119.99576 * 299.99767 * 5 3 2 8 8 N 1.31513 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99871 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47015 * 89.99930 * 9 7 5 11 11 H 1.48501 * 109.47204 * 210.00012 * 9 7 5 12 12 H 1.48497 * 109.47037 * 329.99983 * 9 7 5 13 13 N 1.46904 * 109.46681 * 294.86092 * 3 2 1 14 14 C 1.46901 * 110.99674 * 154.14767 * 13 3 2 15 15 C 1.53004 * 109.47157 * 185.40163 * 14 13 3 16 16 C 1.53118 * 109.52032 * 294.67834 * 15 14 13 17 17 C 1.53033 * 109.28108 * 182.43998 * 16 15 14 18 18 N 1.46852 * 109.52001 * 59.18101 * 17 16 15 19 19 C 1.46900 * 110.99874 * 174.16195 * 18 17 16 20 20 C 1.50697 * 109.47371 * 294.21300 * 19 18 17 21 21 C 1.38238 * 119.99755 * 269.72948 * 20 19 18 22 22 C 1.38228 * 120.00100 * 179.78804 * 21 20 19 23 23 C 1.38234 * 119.99750 * 0.43554 * 22 21 20 24 24 C 1.38236 * 120.00385 * 359.81650 * 23 22 21 25 25 C 1.38234 * 119.99695 * 359.97438 * 24 23 22 26 26 C 1.46850 * 111.19599 * 298.25856 * 18 17 16 27 27 C 1.53035 * 109.52157 * 61.74740 * 26 18 17 28 28 H 1.09005 * 109.46990 * 175.40852 * 1 2 3 29 29 H 1.08998 * 109.46890 * 295.40237 * 1 2 3 30 30 H 1.08994 * 109.47505 * 55.40697 * 1 2 3 31 31 H 1.08999 * 109.47300 * 240.00284 * 2 1 3 32 32 H 1.08995 * 109.47641 * 120.00293 * 2 1 3 33 33 H 0.97008 * 119.99987 * 179.97438 * 8 7 5 34 34 H 1.00891 * 111.00261 * 278.09948 * 13 3 2 35 35 H 1.09005 * 109.47150 * 305.39797 * 14 13 3 36 36 H 1.09002 * 109.47399 * 65.39445 * 14 13 3 37 37 H 1.08999 * 109.52069 * 54.86909 * 15 14 13 38 38 H 1.09002 * 109.50350 * 302.38811 * 16 15 14 39 39 H 1.09008 * 109.50027 * 62.49849 * 16 15 14 40 40 H 1.09004 * 109.46221 * 299.17247 * 17 16 15 41 41 H 1.08995 * 109.45748 * 179.18949 * 17 16 15 42 42 H 1.09000 * 109.46709 * 54.21231 * 19 18 17 43 43 H 1.08999 * 109.47072 * 174.21123 * 19 18 17 44 44 H 1.08002 * 119.99695 * 359.97438 * 21 20 19 45 45 H 1.08002 * 120.00446 * 180.27149 * 22 21 20 46 46 H 1.08000 * 120.00337 * 179.83695 * 23 22 21 47 47 H 1.07997 * 120.00375 * 180.02562 * 24 23 22 48 48 H 1.08002 * 120.00320 * 179.97438 * 25 24 23 49 49 H 1.08994 * 109.46526 * 301.72807 * 26 18 17 50 50 H 1.09003 * 109.45040 * 181.75543 * 26 18 17 51 51 H 1.09006 * 109.50146 * 180.88167 * 27 26 18 52 52 H 1.08996 * 109.50933 * 60.75805 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9822 0.8403 5 6 3.5416 1.4445 0.1272 6 1 4.1486 1.8885 -0.6480 7 6 4.1404 0.8794 1.2331 8 7 3.4012 0.3384 2.1768 9 14 6.0018 0.8824 1.3912 10 1 6.4369 2.1160 2.0943 11 1 6.4347 -0.3080 2.1663 12 1 6.6134 0.8417 0.0387 13 7 1.6542 2.0982 -1.2567 14 6 1.5553 3.5535 -1.0824 15 6 1.0231 4.1864 -2.3697 16 6 2.0417 3.9892 -3.4958 17 6 1.5319 4.6766 -4.7645 18 7 1.3364 6.1082 -4.5021 19 6 0.9800 6.8252 -5.7337 20 6 2.1422 6.7862 -6.6921 21 6 3.0941 7.7883 -6.6653 22 6 4.1626 7.7502 -7.5414 23 6 4.2745 6.7148 -8.4504 24 6 3.3199 5.7154 -8.4807 25 6 2.2537 5.7512 -7.6016 26 6 0.3276 6.3236 -3.4570 27 6 0.8016 5.6854 -2.1493 28 1 -0.3633 -1.0244 -0.0823 29 1 -0.3633 0.4408 0.9283 30 1 -0.3634 0.5834 -0.8459 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8226 -0.0594 2.9547 34 1 2.2977 1.8658 -1.9982 35 1 0.8750 3.7756 -0.2602 36 1 2.5413 3.9604 -0.8580 37 1 0.0794 3.7151 -2.6442 38 1 2.9965 4.4264 -3.2036 39 1 2.1718 2.9238 -3.6864 40 1 0.5838 4.2296 -5.0638 41 1 2.2616 4.5503 -5.5642 42 1 0.1138 6.3492 -6.1934 43 1 0.7409 7.8614 -5.4946 44 1 3.0044 8.5994 -5.9579 45 1 4.9086 8.5308 -7.5176 46 1 5.1079 6.6863 -9.1367 47 1 3.4075 4.9062 -9.1906 48 1 1.5076 4.9706 -7.6255 49 1 -0.6147 5.8688 -3.7624 50 1 0.1827 7.3936 -3.3073 51 1 0.0456 5.8319 -1.3779 52 1 1.7368 6.1493 -1.8359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397611314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:14 Heat of formation + Delta-G solvation = 7.553312 kcal Electronic energy + Delta-G solvation = -26588.162142 eV Core-core repulsion = 23165.121715 eV Total energy + Delta-G solvation = -3423.040427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87604 -38.61874 -36.32014 -34.43430 -32.29497 -31.40865 -31.15237 -30.58393 -30.23057 -27.28051 -25.85414 -24.13537 -23.28420 -22.66967 -22.41291 -21.26692 -20.78901 -19.50509 -19.24809 -16.94485 -16.65544 -16.03223 -15.55349 -15.45941 -14.79763 -14.60712 -14.54658 -14.20284 -13.89445 -13.58500 -13.49471 -13.21669 -13.15041 -12.83719 -12.65010 -12.43885 -12.09830 -12.07889 -11.83603 -11.50897 -11.28902 -11.16085 -11.10336 -11.05005 -11.01504 -10.85861 -10.64946 -10.32074 -10.25970 -10.06713 -9.85375 -9.55225 -9.32699 -9.05319 -9.01174 -8.94674 -8.34793 -8.32394 -7.18460 -5.96606 -4.09465 1.16520 1.24928 3.28563 3.35704 3.38903 3.51568 4.05989 4.41869 4.56741 4.66411 4.83835 4.92589 4.95716 4.98556 5.03527 5.17520 5.27892 5.30717 5.32990 5.39278 5.48742 5.53730 5.58479 5.68287 5.80491 5.82994 5.87424 5.91487 5.95960 6.04365 6.21038 6.29112 6.34814 6.36596 6.41200 6.45284 6.46417 6.53028 6.56156 6.65467 6.74868 6.82797 6.87188 7.05228 7.09966 7.18105 7.21107 7.48882 7.63656 7.81204 8.13530 8.20185 8.38739 8.72426 9.04245 9.58093 11.03272 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002809 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.222578 B = 9965.863137 C =10932.134712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.074 3.926 15 C -0.084 4.084 16 C -0.109 4.109 17 C 0.055 3.945 18 N -0.532 5.532 19 C 0.093 3.907 20 C -0.074 4.074 21 C -0.099 4.099 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.060 3.940 27 C -0.111 4.111 28 H 0.023 0.977 29 H 0.035 0.965 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.089 0.911 33 H 0.261 0.739 34 H 0.326 0.674 35 H 0.057 0.943 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.118 0.882 49 H 0.031 0.969 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 13.715 -18.231 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.056 4.056 15 C -0.103 4.103 16 C -0.147 4.147 17 C -0.073 4.073 18 N -0.256 5.256 19 C -0.035 4.035 20 C -0.075 4.075 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.068 4.068 27 C -0.149 4.149 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.049 0.951 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.790 13.691 -17.754 22.926 hybrid contribution 1.364 -0.157 -0.017 1.373 sum -3.425 13.534 -17.771 22.599 Atomic orbital electron populations 1.21708 0.99095 0.98395 1.00323 1.21491 0.92044 0.99362 1.01548 1.19117 0.92741 0.91191 0.86264 0.95195 1.21877 0.92845 1.38038 1.05461 0.92919 1.24932 0.97853 0.95027 0.95742 1.69882 1.34760 1.38378 1.09413 0.86673 0.86175 0.77510 0.78101 1.20768 1.21180 1.19995 1.60904 1.54778 1.06274 1.09971 1.21754 0.98731 0.90036 0.95126 1.21228 0.98930 0.94233 0.95900 1.21610 0.99253 1.00049 0.93799 1.22197 0.99617 0.86663 0.98795 1.61951 1.45880 1.10831 1.06973 1.21023 0.93621 0.99509 0.89324 1.19753 0.96778 0.94973 0.95948 1.21016 0.93924 0.98626 0.98202 1.21151 0.98123 0.98672 0.96080 1.21142 0.99006 0.94852 0.99133 1.21118 0.94819 0.98806 0.99212 1.21079 0.98515 0.97897 0.95743 1.22080 0.92363 1.00211 0.92133 1.21608 1.01814 0.95836 0.95645 0.95737 0.94618 0.93162 0.95225 0.89252 0.92937 0.85760 0.92415 0.95527 0.91296 0.91499 0.91045 0.95206 0.90698 0.94184 0.90102 0.86054 0.86199 0.86314 0.86189 0.86356 0.95065 0.91156 0.91590 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.85 37.15 0.37 -2.51 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.21 5.34 1.97 -68.86 -0.14 5.20 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.74 8.47 -34.44 -0.29 -15.03 16 6 H 0.05 1.43 7.73 -52.49 -0.41 1.02 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.23 11.29 55.43 0.63 -24.61 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.69 -14.37 5.58 -107.94 -0.60 -14.98 16 14 C 0.07 1.37 4.97 -3.82 -0.02 1.35 16 15 C -0.08 -1.24 2.46 -90.50 -0.22 -1.46 16 16 C -0.11 -1.56 5.09 -26.65 -0.14 -1.70 16 17 C 0.05 0.67 5.16 -3.83 -0.02 0.66 16 18 N -0.53 -6.17 4.65 -236.12 -1.10 -7.27 16 19 C 0.09 0.91 5.12 -4.98 -0.03 0.88 16 20 C -0.07 -0.76 4.89 -104.62 -0.51 -1.27 16 21 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 22 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.11 -1.12 7.88 -39.58 -0.31 -1.43 16 26 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 27 C -0.11 -1.41 5.38 -26.65 -0.14 -1.56 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.01 7.63 -51.93 -0.40 0.61 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.33 6.75 6.93 -39.30 -0.27 6.48 16 35 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 36 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.06 6.94 -51.92 -0.36 0.70 16 40 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.92 5.75 -51.93 -0.30 0.62 16 42 H 0.04 0.37 8.07 -51.93 -0.42 -0.04 16 43 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 49 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 52 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 400.11 15.07 6.03 6.03 Total: -1.00 -28.31 400.11 -12.92 -41.24 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.57 Total: 6.35 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.29 Total: -23.09 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -1.07 Total: -46.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.31 -12.92 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds