Wall clock time and date at job start Tue Mar 31 2020 11:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47216 * 2 1 4 4 H 1.08992 * 109.46658 * 54.86062 * 3 2 1 5 5 C 1.50698 * 109.47281 * 174.86525 * 3 2 1 6 6 H 1.08000 * 120.00085 * 120.00161 * 5 3 2 7 7 C 1.37878 * 119.99576 * 299.99767 * 5 3 2 8 8 N 1.31513 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99871 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47015 * 89.99930 * 9 7 5 11 11 H 1.48501 * 109.47204 * 210.00012 * 9 7 5 12 12 H 1.48497 * 109.47037 * 329.99983 * 9 7 5 13 13 N 1.46904 * 109.46681 * 294.86092 * 3 2 1 14 14 C 1.46901 * 110.99674 * 154.14767 * 13 3 2 15 15 C 1.53004 * 109.47157 * 185.40163 * 14 13 3 16 16 C 1.53118 * 109.52032 * 294.67834 * 15 14 13 17 17 C 1.53033 * 109.28108 * 182.43998 * 16 15 14 18 18 N 1.46852 * 109.52001 * 59.18101 * 17 16 15 19 19 C 1.46900 * 110.99874 * 174.16195 * 18 17 16 20 20 C 1.50697 * 109.47371 * 294.21300 * 19 18 17 21 21 C 1.38238 * 119.99755 * 269.72948 * 20 19 18 22 22 C 1.38228 * 120.00100 * 179.78804 * 21 20 19 23 23 C 1.38234 * 119.99750 * 0.43554 * 22 21 20 24 24 C 1.38236 * 120.00385 * 359.81650 * 23 22 21 25 25 C 1.38234 * 119.99695 * 359.97438 * 24 23 22 26 26 C 1.46850 * 111.19599 * 298.25856 * 18 17 16 27 27 C 1.53035 * 109.52157 * 61.74740 * 26 18 17 28 28 H 1.09005 * 109.46990 * 175.40852 * 1 2 3 29 29 H 1.08998 * 109.46890 * 295.40237 * 1 2 3 30 30 H 1.08994 * 109.47505 * 55.40697 * 1 2 3 31 31 H 1.08999 * 109.47300 * 240.00284 * 2 1 3 32 32 H 1.08995 * 109.47641 * 120.00293 * 2 1 3 33 33 H 0.97008 * 119.99987 * 179.97438 * 8 7 5 34 34 H 1.00891 * 111.00261 * 278.09948 * 13 3 2 35 35 H 1.09005 * 109.47150 * 305.39797 * 14 13 3 36 36 H 1.09002 * 109.47399 * 65.39445 * 14 13 3 37 37 H 1.08999 * 109.52069 * 54.86909 * 15 14 13 38 38 H 1.09002 * 109.50350 * 302.38811 * 16 15 14 39 39 H 1.09008 * 109.50027 * 62.49849 * 16 15 14 40 40 H 1.09004 * 109.46221 * 299.17247 * 17 16 15 41 41 H 1.08995 * 109.45748 * 179.18949 * 17 16 15 42 42 H 1.09000 * 109.46709 * 54.21231 * 19 18 17 43 43 H 1.08999 * 109.47072 * 174.21123 * 19 18 17 44 44 H 1.08002 * 119.99695 * 359.97438 * 21 20 19 45 45 H 1.08002 * 120.00446 * 180.27149 * 22 21 20 46 46 H 1.08000 * 120.00337 * 179.83695 * 23 22 21 47 47 H 1.07997 * 120.00375 * 180.02562 * 24 23 22 48 48 H 1.08002 * 120.00320 * 179.97438 * 25 24 23 49 49 H 1.08994 * 109.46526 * 301.72807 * 26 18 17 50 50 H 1.09003 * 109.45040 * 181.75543 * 26 18 17 51 51 H 1.09006 * 109.50146 * 180.88167 * 27 26 18 52 52 H 1.08996 * 109.50933 * 60.75805 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6034 1.9822 0.8403 5 6 3.5416 1.4445 0.1272 6 1 4.1486 1.8885 -0.6480 7 6 4.1404 0.8794 1.2331 8 7 3.4012 0.3384 2.1768 9 14 6.0018 0.8824 1.3912 10 1 6.4369 2.1160 2.0943 11 1 6.4347 -0.3080 2.1663 12 1 6.6134 0.8417 0.0387 13 7 1.6542 2.0982 -1.2567 14 6 1.5553 3.5535 -1.0824 15 6 1.0231 4.1864 -2.3697 16 6 2.0417 3.9892 -3.4958 17 6 1.5319 4.6766 -4.7645 18 7 1.3364 6.1082 -4.5021 19 6 0.9800 6.8252 -5.7337 20 6 2.1422 6.7862 -6.6921 21 6 3.0941 7.7883 -6.6653 22 6 4.1626 7.7502 -7.5414 23 6 4.2745 6.7148 -8.4504 24 6 3.3199 5.7154 -8.4807 25 6 2.2537 5.7512 -7.6016 26 6 0.3276 6.3236 -3.4570 27 6 0.8016 5.6854 -2.1493 28 1 -0.3633 -1.0244 -0.0823 29 1 -0.3633 0.4408 0.9283 30 1 -0.3634 0.5834 -0.8459 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8226 -0.0594 2.9547 34 1 2.2977 1.8658 -1.9982 35 1 0.8750 3.7756 -0.2602 36 1 2.5413 3.9604 -0.8580 37 1 0.0794 3.7151 -2.6442 38 1 2.9965 4.4264 -3.2036 39 1 2.1718 2.9238 -3.6864 40 1 0.5838 4.2296 -5.0638 41 1 2.2616 4.5503 -5.5642 42 1 0.1138 6.3492 -6.1934 43 1 0.7409 7.8614 -5.4946 44 1 3.0044 8.5994 -5.9579 45 1 4.9086 8.5308 -7.5176 46 1 5.1079 6.6863 -9.1367 47 1 3.4075 4.9062 -9.1906 48 1 1.5076 4.9706 -7.6255 49 1 -0.6147 5.8688 -3.7624 50 1 0.1827 7.3936 -3.3073 51 1 0.0456 5.8319 -1.3779 52 1 1.7368 6.1493 -1.8359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397611314.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:13 Heat of formation + Delta-G solvation = -6.717970 kcal Electronic energy + Delta-G solvation = -26588.780991 eV Core-core repulsion = 23165.121715 eV Total energy + Delta-G solvation = -3423.659277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70855 -39.56723 -37.96176 -35.77408 -33.98402 -32.87895 -31.92920 -31.57905 -31.45901 -28.81014 -27.29307 -25.45098 -24.48891 -24.06498 -23.26610 -22.33649 -21.73467 -21.34760 -20.48840 -18.72686 -17.62874 -17.01142 -16.76475 -16.33386 -16.32053 -15.98775 -15.58076 -15.44569 -15.11309 -14.82874 -14.79941 -14.43059 -14.26075 -14.10736 -13.68928 -13.52401 -13.42426 -13.34973 -13.08919 -13.04155 -12.90683 -12.70387 -12.58056 -12.47581 -12.11165 -12.05424 -11.92182 -11.78182 -11.69513 -11.51991 -11.46299 -11.11587 -11.02404 -10.87413 -10.46317 -9.75487 -9.66388 -9.18591 -9.03272 -8.05824 -6.28353 0.46384 0.55413 1.36589 1.38260 1.47613 2.39202 2.76865 3.13253 3.24131 3.63794 3.82070 3.91876 3.93077 4.01167 4.19395 4.21985 4.29708 4.35522 4.40147 4.48002 4.54161 4.60077 4.64836 4.69032 4.71527 4.74922 4.78114 4.82475 4.83639 4.93647 4.95826 5.02498 5.12034 5.14524 5.16391 5.18884 5.20830 5.25553 5.36396 5.42795 5.51403 5.57308 5.60796 5.65871 5.66962 5.74678 5.78371 6.11361 6.13657 6.17162 6.21312 6.22573 6.40043 6.83601 7.02660 7.43168 8.90370 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.002809 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.222578 B = 9965.863137 C =10932.134712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.559 4.559 6 H 0.047 0.953 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.678 5.678 14 C 0.078 3.922 15 C -0.071 4.071 16 C -0.105 4.105 17 C 0.064 3.936 18 N -0.543 5.543 19 C 0.096 3.904 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.125 4.125 26 C 0.064 3.936 27 C -0.107 4.107 28 H 0.046 0.954 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.262 0.738 34 H 0.328 0.672 35 H 0.049 0.951 36 H 0.004 0.996 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.124 0.876 49 H 0.038 0.962 50 H 0.089 0.911 51 H 0.074 0.926 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 14.543 -19.814 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.598 4.598 6 H 0.065 0.935 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.205 1.205 11 H -0.206 1.206 12 H -0.195 1.195 13 N -0.308 5.308 14 C -0.052 4.052 15 C -0.090 4.090 16 C -0.143 4.143 17 C -0.063 4.063 18 N -0.268 5.268 19 C -0.031 4.031 20 C -0.088 4.088 21 C -0.131 4.131 22 C -0.149 4.149 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.144 4.144 26 C -0.063 4.063 27 C -0.145 4.145 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.153 0.847 48 H 0.142 0.858 49 H 0.056 0.944 50 H 0.107 0.893 51 H 0.093 0.907 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.974 14.531 -19.353 24.707 hybrid contribution 1.438 -0.393 0.469 1.563 sum -3.536 14.138 -18.884 23.853 Atomic orbital electron populations 1.21566 0.96387 0.99959 1.00379 1.21354 0.94451 0.98352 0.99947 1.18907 0.91499 0.91606 0.86746 0.98573 1.22165 0.94169 1.37987 1.05492 0.93486 1.25659 1.02072 0.94762 0.95509 1.70007 1.36368 1.38846 1.09773 0.85705 0.81112 0.77577 0.78133 1.20451 1.20607 1.19549 1.60859 1.54164 1.07513 1.08216 1.21778 0.97502 0.88727 0.97198 1.21095 0.98694 0.95468 0.93763 1.21529 0.98297 0.99710 0.94755 1.22040 0.99754 0.87236 0.97311 1.61918 1.46523 1.10272 1.08066 1.21040 0.93677 0.99949 0.88398 1.19886 0.97187 0.95356 0.96359 1.21223 0.94239 0.98954 0.98696 1.21437 0.98352 0.99253 0.95897 1.21452 0.99503 0.94617 0.99345 1.21401 0.94703 0.99404 0.99422 1.21252 0.99012 0.98109 0.96001 1.22053 0.92259 1.01210 0.90789 1.21568 1.01633 0.94076 0.97260 0.93535 0.95200 0.92240 0.95374 0.92162 0.92869 0.85519 0.93289 0.97792 0.91075 0.93318 0.91879 0.94601 0.90666 0.93534 0.88841 0.85375 0.84565 0.84475 0.84654 0.85775 0.94352 0.89265 0.90738 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -5.01 5.45 30.59 0.17 -4.84 16 3 C 0.22 11.27 1.97 44.17 0.09 11.35 16 4 H 0.00 -0.21 7.70 -2.39 -0.02 -0.23 16 5 C -0.56 -30.96 8.47 25.60 0.22 -30.74 16 6 H 0.05 2.60 7.73 -2.91 -0.02 2.57 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.82 11.29 21.45 0.24 -52.58 16 9 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.68 -28.63 5.58 -495.42 -2.77 -31.39 16 14 C 0.08 2.95 4.97 86.30 0.43 3.38 16 15 C -0.07 -2.07 2.46 -10.71 -0.03 -2.09 16 16 C -0.10 -2.96 5.09 30.64 0.16 -2.81 16 17 C 0.06 1.50 5.16 86.32 0.45 1.94 16 18 N -0.54 -11.64 4.65 -900.93 -4.19 -15.83 16 19 C 0.10 1.69 5.12 85.56 0.44 2.13 16 20 C -0.09 -1.66 4.89 -19.87 -0.10 -1.76 16 21 C -0.11 -2.08 9.70 22.27 0.22 -1.86 16 22 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.30 7.88 22.27 0.18 -2.12 16 26 C 0.06 1.28 5.46 86.32 0.47 1.75 16 27 C -0.11 -2.61 5.38 30.65 0.16 -2.45 16 28 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 2.31 7.63 -2.39 -0.02 2.29 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 3.32 5.95 -2.39 -0.01 3.30 16 33 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.33 13.74 6.93 -89.70 -0.62 13.11 16 35 H 0.05 1.92 7.92 -2.38 -0.02 1.90 16 36 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.86 6.94 -2.38 -0.02 1.85 16 40 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.08 1.76 5.75 -2.39 -0.01 1.75 16 42 H 0.05 0.76 8.07 -2.39 -0.02 0.74 16 43 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 44 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 48 H 0.12 2.03 7.95 -2.91 -0.02 2.01 16 49 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.09 1.48 8.02 -2.39 -0.02 1.46 16 51 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 52 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -60.94 400.11 0.22 -60.72 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: 0.24 Total: 29.85 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 4.67 Total: -36.92 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -6.71 Total: -99.79 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -60.94 0.22 -60.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611314.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.000 kcal (2) G-P(sol) polarization free energy of solvation -60.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds