Wall clock time and date at job start Tue Mar 31 2020 11:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.09003 * 109.47157 * 305.99630 * 3 2 1 5 5 C 1.50700 * 109.47014 * 185.99521 * 3 2 1 6 6 H 1.07994 * 119.99909 * 244.57144 * 5 3 2 7 7 C 1.37881 * 119.99898 * 64.57616 * 5 3 2 8 8 N 1.31512 * 119.99846 * 192.48515 * 7 5 3 9 9 Si 1.86802 * 119.99903 * 12.48446 * 7 5 3 10 10 H 1.48508 * 109.46910 * 91.70724 * 9 7 5 11 11 H 1.48498 * 109.46974 * 211.70407 * 9 7 5 12 12 H 1.48494 * 109.47085 * 331.70688 * 9 7 5 13 13 N 1.46905 * 109.47239 * 65.99441 * 3 2 1 14 14 C 1.46892 * 111.00002 * 266.63320 * 13 3 2 15 15 H 1.08996 * 109.52868 * 39.30598 * 14 13 3 16 16 C 1.53126 * 109.52357 * 279.11262 * 14 13 3 17 17 C 1.53031 * 109.28158 * 182.44103 * 16 14 13 18 18 N 1.46852 * 109.52408 * 59.17964 * 17 16 14 19 19 C 1.46896 * 111.00194 * 174.15758 * 18 17 16 20 20 C 1.50696 * 109.47514 * 294.21344 * 19 18 17 21 21 C 1.38235 * 119.99982 * 89.99890 * 20 19 18 22 22 C 1.38229 * 119.99989 * 179.97438 * 21 20 19 23 23 C 1.38241 * 120.00193 * 0.09563 * 22 21 20 24 24 C 1.38232 * 119.99582 * 359.85660 * 23 22 21 25 25 C 1.38233 * 119.99800 * 269.97989 * 20 19 18 26 26 C 1.46848 * 111.19765 * 298.26231 * 18 17 16 27 27 C 1.53032 * 109.52591 * 61.73762 * 26 18 17 28 28 H 1.09004 * 109.50614 * 180.88141 * 27 26 18 29 29 C 1.53003 * 109.50175 * 60.80033 * 27 26 18 30 30 H 1.08997 * 109.47391 * 182.89829 * 1 2 3 31 31 H 1.09006 * 109.47036 * 302.89756 * 1 2 3 32 32 H 1.08993 * 109.47282 * 62.89118 * 1 2 3 33 33 H 1.08998 * 109.46856 * 240.00036 * 2 1 3 34 34 H 1.08997 * 109.47235 * 119.99592 * 2 1 3 35 35 H 0.96999 * 120.00167 * 180.02562 * 8 7 5 36 36 H 1.00900 * 110.99728 * 30.58675 * 13 3 2 37 37 H 1.08997 * 109.50500 * 302.38764 * 16 14 13 38 38 H 1.09004 * 109.49582 * 62.46052 * 16 14 13 39 39 H 1.09008 * 109.46601 * 299.17040 * 17 16 14 40 40 H 1.08998 * 109.46776 * 179.19971 * 17 16 14 41 41 H 1.09005 * 109.47004 * 174.21112 * 19 18 17 42 42 H 1.09000 * 109.46704 * 54.21614 * 19 18 17 43 43 H 1.08003 * 119.99584 * 359.70168 * 21 20 19 44 44 H 1.08002 * 120.00315 * 179.97438 * 22 21 20 45 45 H 1.07998 * 120.00077 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.99883 * 180.02562 * 24 23 22 47 47 H 1.07994 * 120.00507 * 359.97438 * 25 20 19 48 48 H 1.09000 * 109.46000 * 181.75226 * 26 18 17 49 49 H 1.09002 * 109.46065 * 301.72263 * 26 18 17 50 50 H 1.08999 * 109.46891 * 60.00494 * 29 27 26 51 51 H 1.09006 * 109.47105 * 179.97438 * 29 27 26 52 52 H 1.08997 * 109.47333 * 299.99779 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8315 5 6 3.5397 1.4451 -0.1484 6 1 4.1609 1.8180 0.6525 7 6 4.1186 0.9715 -1.3067 8 7 5.4130 0.7424 -1.3488 9 14 3.0645 0.6552 -2.8161 10 1 3.0376 1.8733 -3.6651 11 1 3.6358 -0.4756 -3.5907 12 1 1.6821 0.3167 -2.3923 13 7 1.6720 2.0920 1.2652 14 6 0.3967 2.8096 1.1371 15 1 -0.2914 2.2238 0.5278 16 6 0.6386 4.1689 0.4749 17 6 -0.6831 4.9366 0.3995 18 7 -1.2217 5.1205 1.7532 19 6 -2.4181 5.9726 1.7325 20 6 -2.0359 7.3649 1.3006 21 6 -2.0552 7.7025 -0.0398 22 6 -1.7051 8.9797 -0.4359 23 6 -1.3339 9.9188 0.5081 24 6 -1.3156 9.5815 1.8485 25 6 -1.6665 8.3044 2.2448 26 6 -1.5064 3.8290 2.3914 27 6 -0.2093 3.0282 2.5263 28 1 -0.4233 2.0632 2.9858 29 6 0.7802 3.8019 3.4000 30 1 -0.3634 -1.0263 0.0520 31 1 -0.3633 0.5582 0.8629 32 1 -0.3633 0.4683 -0.9147 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 5.8204 0.4096 -2.1637 36 1 1.6357 1.4218 2.0186 37 1 1.3571 4.7383 1.0644 38 1 1.0309 4.0188 -0.5310 39 1 -1.3967 4.3731 -0.2018 40 1 -0.5118 5.9106 -0.0587 41 1 -2.8556 6.0089 2.7302 42 1 -3.1449 5.5614 1.0318 43 1 -2.3395 6.9670 -0.7778 44 1 -1.7198 9.2434 -1.4831 45 1 -1.0600 10.9166 0.1986 46 1 -1.0260 10.3153 2.5862 47 1 -1.6521 8.0409 3.2920 48 1 -1.9328 3.9987 3.3801 49 1 -2.2160 3.2707 1.7808 50 1 0.3466 3.9595 4.3876 51 1 1.7037 3.2309 3.4961 52 1 0.9950 4.7660 2.9393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398038975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:07 Heat of formation + Delta-G solvation = 29.744017 kcal Electronic energy + Delta-G solvation = -27660.461771 eV Core-core repulsion = 24238.383605 eV Total energy + Delta-G solvation = -3422.078166 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97947 -38.91327 -36.59422 -34.18800 -32.10229 -31.46754 -31.27761 -30.94997 -29.54225 -27.32579 -26.48569 -25.13924 -22.94387 -22.81692 -22.23628 -21.83828 -20.94302 -19.77932 -18.34705 -16.91409 -16.78956 -15.98389 -15.49379 -15.43069 -15.15066 -14.69087 -14.46594 -14.31188 -14.03717 -13.67485 -13.52341 -13.37553 -12.94295 -12.81643 -12.66862 -12.59447 -12.39218 -12.04440 -11.74111 -11.65582 -11.41560 -11.26126 -11.19461 -11.03923 -11.00692 -10.85110 -10.76892 -10.53074 -10.46633 -10.00185 -9.88417 -9.77841 -9.28953 -9.16457 -9.00339 -8.89029 -8.36443 -8.22760 -7.24933 -6.00888 -3.93503 1.21764 1.30148 3.29517 3.38388 3.40886 3.56899 4.11975 4.46687 4.61919 4.71211 4.88298 4.89779 4.96826 5.01569 5.09879 5.17436 5.26736 5.35323 5.37318 5.40497 5.51454 5.58001 5.58167 5.73000 5.75816 5.81275 5.85005 5.88109 5.91315 5.93494 6.02201 6.02490 6.12942 6.25625 6.32367 6.34352 6.39720 6.45695 6.49402 6.52662 6.57823 6.61456 6.76506 6.83164 6.88061 6.91658 7.01500 7.13041 7.17817 7.24627 7.81755 8.04080 8.44818 8.78220 9.15581 9.65348 11.12846 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003461 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.455022 B = 8089.309681 C = 8805.347833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C 0.194 3.806 4 H 0.025 0.975 5 C -0.495 4.495 6 H 0.080 0.920 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.252 1.252 13 N -0.663 5.663 14 C 0.084 3.916 15 H 0.038 0.962 16 C -0.104 4.104 17 C 0.054 3.946 18 N -0.525 5.525 19 C 0.092 3.908 20 C -0.073 4.073 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.098 4.098 26 C 0.065 3.935 27 C -0.087 4.087 28 H 0.065 0.935 29 C -0.128 4.128 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.261 0.739 36 H 0.328 0.672 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.071 0.929 49 H 0.028 0.972 50 H 0.035 0.965 51 H 0.062 0.938 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 12.685 6.414 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.085 3.915 4 H 0.043 0.957 5 C -0.533 4.533 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.177 1.177 13 N -0.292 5.292 14 C -0.026 4.026 15 H 0.056 0.944 16 C -0.142 4.142 17 C -0.074 4.074 18 N -0.249 5.249 19 C -0.035 4.035 20 C -0.073 4.073 21 C -0.132 4.132 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.117 4.117 26 C -0.063 4.063 27 C -0.106 4.106 28 H 0.083 0.917 29 C -0.185 4.185 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.146 0.854 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.057 0.943 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.090 0.910 49 H 0.046 0.954 50 H 0.055 0.945 51 H 0.081 0.919 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.739 13.385 6.461 23.142 hybrid contribution -1.666 -1.443 -1.622 2.736 sum -19.404 11.943 4.839 23.293 Atomic orbital electron populations 1.22038 0.98740 0.99977 1.00644 1.22719 0.92694 1.02123 1.01885 1.19552 0.96589 0.87782 0.87611 0.95683 1.20991 0.89229 1.40371 1.02704 0.90218 1.24902 0.94658 0.95076 0.98477 1.69946 1.10593 1.45547 1.27632 0.87360 0.82213 0.77915 0.84067 1.20834 1.21599 1.17663 1.60647 1.28305 1.32814 1.07480 1.21705 0.91482 0.95099 0.94362 0.94447 1.21600 0.95674 0.95467 1.01455 1.22242 0.96645 1.00201 0.88352 1.61924 1.28474 1.14233 1.20289 1.21022 0.91492 0.89962 1.01013 1.19737 0.99212 0.95086 0.93284 1.21077 1.00269 0.96473 0.95424 1.21112 0.99781 0.93599 0.99467 1.21133 1.00218 0.99435 0.93340 1.21146 1.00220 0.96638 0.96036 1.21005 0.98334 0.92892 0.99440 1.22097 0.96711 0.89031 0.98493 1.21293 0.94672 0.97892 0.96750 0.91709 1.21619 0.98533 1.01282 0.97097 0.94232 0.93091 0.93822 0.92041 0.92629 0.92896 0.85442 0.90134 0.91560 0.95654 0.90525 0.90129 0.94328 0.86430 0.86251 0.86350 0.86223 0.86044 0.91017 0.95412 0.94547 0.91946 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.73 37.16 0.32 -2.39 16 2 C -0.15 -3.25 4.54 -26.73 -0.12 -3.37 16 3 C 0.19 4.40 1.59 -68.86 -0.11 4.29 16 4 H 0.03 0.60 5.65 -51.93 -0.29 0.31 16 5 C -0.49 -13.77 9.30 -34.44 -0.32 -14.09 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 7 C 0.07 2.00 5.36 -17.82 -0.10 1.91 16 8 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 9 Si 0.86 21.13 25.75 -169.99 -4.38 16.75 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 12 H -0.25 -5.79 5.30 56.52 0.30 -5.49 16 13 N -0.66 -12.92 5.10 -100.82 -0.51 -13.43 16 14 C 0.08 1.37 1.28 -67.59 -0.09 1.28 16 15 H 0.04 0.64 5.23 -51.93 -0.27 0.36 16 16 C -0.10 -1.71 5.16 -26.65 -0.14 -1.85 16 17 C 0.05 0.73 5.15 -3.83 -0.02 0.71 16 18 N -0.52 -6.35 3.93 -236.12 -0.93 -7.28 16 19 C 0.09 0.95 5.12 -4.98 -0.03 0.92 16 20 C -0.07 -0.77 4.89 -104.63 -0.51 -1.29 16 21 C -0.11 -1.19 7.88 -39.59 -0.31 -1.50 16 22 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 26 C 0.06 0.76 4.90 -3.84 -0.02 0.74 16 27 C -0.09 -1.17 2.65 -90.54 -0.24 -1.41 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 C -0.13 -1.78 8.57 37.16 0.32 -1.47 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.81 5.72 -51.93 -0.30 0.51 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.39 4.66 -51.93 -0.24 1.15 16 34 H 0.05 1.15 8.00 -51.93 -0.42 0.73 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 36 H 0.33 6.10 7.85 -39.29 -0.31 5.79 16 37 H 0.08 1.44 6.58 -51.93 -0.34 1.10 16 38 H 0.07 1.22 7.30 -51.93 -0.38 0.84 16 39 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 40 H 0.08 1.03 5.74 -51.93 -0.30 0.73 16 41 H 0.08 0.73 7.93 -51.93 -0.41 0.32 16 42 H 0.04 0.38 8.07 -51.93 -0.42 -0.04 16 43 H 0.12 1.14 7.94 -52.48 -0.42 0.72 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 47 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 48 H 0.07 0.74 8.02 -51.93 -0.42 0.33 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.06 0.96 7.47 -51.93 -0.39 0.57 16 52 H 0.07 1.04 6.01 -51.93 -0.31 0.73 16 LS Contribution 382.84 15.07 5.77 5.77 Total: -1.00 -29.80 382.84 -11.31 -41.10 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -9.10 Total: 7.47 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -2.93 Total: -23.60 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.67 Total: -47.49 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.38 Total: 16.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.80 -11.31 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.848 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds