Wall clock time and date at job start Tue Mar 31 2020 11:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 H 1.09003 * 109.47157 * 305.99630 * 3 2 1 5 5 C 1.50700 * 109.47014 * 185.99521 * 3 2 1 6 6 H 1.07994 * 119.99909 * 244.57144 * 5 3 2 7 7 C 1.37881 * 119.99898 * 64.57616 * 5 3 2 8 8 N 1.31512 * 119.99846 * 192.48515 * 7 5 3 9 9 Si 1.86802 * 119.99903 * 12.48446 * 7 5 3 10 10 H 1.48508 * 109.46910 * 91.70724 * 9 7 5 11 11 H 1.48498 * 109.46974 * 211.70407 * 9 7 5 12 12 H 1.48494 * 109.47085 * 331.70688 * 9 7 5 13 13 N 1.46905 * 109.47239 * 65.99441 * 3 2 1 14 14 C 1.46892 * 111.00002 * 266.63320 * 13 3 2 15 15 H 1.08996 * 109.52868 * 39.30598 * 14 13 3 16 16 C 1.53126 * 109.52357 * 279.11262 * 14 13 3 17 17 C 1.53031 * 109.28158 * 182.44103 * 16 14 13 18 18 N 1.46852 * 109.52408 * 59.17964 * 17 16 14 19 19 C 1.46896 * 111.00194 * 174.15758 * 18 17 16 20 20 C 1.50696 * 109.47514 * 294.21344 * 19 18 17 21 21 C 1.38235 * 119.99982 * 89.99890 * 20 19 18 22 22 C 1.38229 * 119.99989 * 179.97438 * 21 20 19 23 23 C 1.38241 * 120.00193 * 0.09563 * 22 21 20 24 24 C 1.38232 * 119.99582 * 359.85660 * 23 22 21 25 25 C 1.38233 * 119.99800 * 269.97989 * 20 19 18 26 26 C 1.46848 * 111.19765 * 298.26231 * 18 17 16 27 27 C 1.53032 * 109.52591 * 61.73762 * 26 18 17 28 28 H 1.09004 * 109.50614 * 180.88141 * 27 26 18 29 29 C 1.53003 * 109.50175 * 60.80033 * 27 26 18 30 30 H 1.08997 * 109.47391 * 182.89829 * 1 2 3 31 31 H 1.09006 * 109.47036 * 302.89756 * 1 2 3 32 32 H 1.08993 * 109.47282 * 62.89118 * 1 2 3 33 33 H 1.08998 * 109.46856 * 240.00036 * 2 1 3 34 34 H 1.08997 * 109.47235 * 119.99592 * 2 1 3 35 35 H 0.96999 * 120.00167 * 180.02562 * 8 7 5 36 36 H 1.00900 * 110.99728 * 30.58675 * 13 3 2 37 37 H 1.08997 * 109.50500 * 302.38764 * 16 14 13 38 38 H 1.09004 * 109.49582 * 62.46052 * 16 14 13 39 39 H 1.09008 * 109.46601 * 299.17040 * 17 16 14 40 40 H 1.08998 * 109.46776 * 179.19971 * 17 16 14 41 41 H 1.09005 * 109.47004 * 174.21112 * 19 18 17 42 42 H 1.09000 * 109.46704 * 54.21614 * 19 18 17 43 43 H 1.08003 * 119.99584 * 359.70168 * 21 20 19 44 44 H 1.08002 * 120.00315 * 179.97438 * 22 21 20 45 45 H 1.07998 * 120.00077 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.99883 * 180.02562 * 24 23 22 47 47 H 1.07994 * 120.00507 * 359.97438 * 25 20 19 48 48 H 1.09000 * 109.46000 * 181.75226 * 26 18 17 49 49 H 1.09002 * 109.46065 * 301.72263 * 26 18 17 50 50 H 1.08999 * 109.46891 * 60.00494 * 29 27 26 51 51 H 1.09006 * 109.47105 * 179.97438 * 29 27 26 52 52 H 1.08997 * 109.47333 * 299.99779 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5917 1.9864 -0.8315 5 6 3.5397 1.4451 -0.1484 6 1 4.1609 1.8180 0.6525 7 6 4.1186 0.9715 -1.3067 8 7 5.4130 0.7424 -1.3488 9 14 3.0645 0.6552 -2.8161 10 1 3.0376 1.8733 -3.6651 11 1 3.6358 -0.4756 -3.5907 12 1 1.6821 0.3167 -2.3923 13 7 1.6720 2.0920 1.2652 14 6 0.3967 2.8096 1.1371 15 1 -0.2914 2.2238 0.5278 16 6 0.6386 4.1689 0.4749 17 6 -0.6831 4.9366 0.3995 18 7 -1.2217 5.1205 1.7532 19 6 -2.4181 5.9726 1.7325 20 6 -2.0359 7.3649 1.3006 21 6 -2.0552 7.7025 -0.0398 22 6 -1.7051 8.9797 -0.4359 23 6 -1.3339 9.9188 0.5081 24 6 -1.3156 9.5815 1.8485 25 6 -1.6665 8.3044 2.2448 26 6 -1.5064 3.8290 2.3914 27 6 -0.2093 3.0282 2.5263 28 1 -0.4233 2.0632 2.9858 29 6 0.7802 3.8019 3.4000 30 1 -0.3634 -1.0263 0.0520 31 1 -0.3633 0.5582 0.8629 32 1 -0.3633 0.4683 -0.9147 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 5.8204 0.4096 -2.1637 36 1 1.6357 1.4218 2.0186 37 1 1.3571 4.7383 1.0644 38 1 1.0309 4.0188 -0.5310 39 1 -1.3967 4.3731 -0.2018 40 1 -0.5118 5.9106 -0.0587 41 1 -2.8556 6.0089 2.7302 42 1 -3.1449 5.5614 1.0318 43 1 -2.3395 6.9670 -0.7778 44 1 -1.7198 9.2434 -1.4831 45 1 -1.0600 10.9166 0.1986 46 1 -1.0260 10.3153 2.5862 47 1 -1.6521 8.0409 3.2920 48 1 -1.9328 3.9987 3.3801 49 1 -2.2160 3.2707 1.7808 50 1 0.3466 3.9595 4.3876 51 1 1.7037 3.2309 3.4961 52 1 0.9950 4.7660 2.9393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398038975.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:06 Heat of formation + Delta-G solvation = 12.266572 kcal Electronic energy + Delta-G solvation = -27661.219650 eV Core-core repulsion = 24238.383605 eV Total energy + Delta-G solvation = -3422.836045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97107 -39.86033 -38.00395 -35.45635 -34.09183 -32.60193 -32.35749 -31.69711 -30.86338 -29.07849 -27.46084 -26.31793 -24.51116 -23.80606 -23.18277 -23.06030 -21.74777 -21.53934 -19.63377 -18.69332 -17.65177 -17.10887 -16.96111 -16.44862 -16.14945 -16.08507 -15.68282 -15.42286 -15.33445 -14.95475 -14.78400 -14.57531 -14.24755 -14.04564 -13.76924 -13.66952 -13.49401 -13.32570 -13.31573 -12.86035 -12.68397 -12.55515 -12.51460 -12.37896 -12.29023 -12.09588 -11.92838 -11.78889 -11.73236 -11.60899 -11.39142 -11.28038 -11.02169 -10.88135 -10.52697 -9.74229 -9.64430 -9.13905 -8.83639 -8.24607 -6.21528 0.47935 0.56875 1.31777 1.35758 1.44003 2.36479 2.77795 3.09395 3.24762 3.52182 3.79814 3.94077 3.97344 4.01022 4.21471 4.22349 4.29073 4.31870 4.34062 4.39045 4.42154 4.46692 4.48880 4.61361 4.66583 4.68140 4.73041 4.78479 4.82901 4.84612 4.89799 4.98343 5.06515 5.08536 5.10038 5.17735 5.19462 5.21473 5.22969 5.35436 5.42056 5.49446 5.55783 5.61822 5.68189 5.75065 5.76664 5.77706 6.14638 6.15627 6.18045 6.24635 6.81321 6.84783 6.90510 7.42242 8.93140 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003461 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.455022 B = 8089.309681 C = 8805.347833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.203 3.797 4 H 0.019 0.981 5 C -0.499 4.499 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.950 5.950 9 Si 0.923 3.077 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.222 1.222 13 N -0.675 5.675 14 C 0.087 3.913 15 H 0.042 0.958 16 C -0.101 4.101 17 C 0.066 3.934 18 N -0.532 5.532 19 C 0.097 3.903 20 C -0.086 4.086 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.131 4.131 24 C -0.131 4.131 25 C -0.110 4.110 26 C 0.068 3.932 27 C -0.082 4.082 28 H 0.079 0.921 29 C -0.121 4.121 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.333 0.667 37 H 0.059 0.941 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.045 0.955 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.131 0.869 48 H 0.095 0.905 49 H 0.036 0.964 50 H 0.057 0.943 51 H 0.039 0.961 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.274 12.879 6.826 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C 0.093 3.907 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.747 3.253 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.145 1.145 13 N -0.305 5.305 14 C -0.023 4.023 15 H 0.060 0.940 16 C -0.139 4.139 17 C -0.062 4.062 18 N -0.257 5.257 19 C -0.030 4.030 20 C -0.086 4.086 21 C -0.146 4.146 22 C -0.151 4.151 23 C -0.149 4.149 24 C -0.149 4.149 25 C -0.128 4.128 26 C -0.060 4.060 27 C -0.101 4.101 28 H 0.097 0.903 29 C -0.178 4.178 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.149 0.851 48 H 0.113 0.887 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.058 0.942 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.408 13.589 6.897 26.278 hybrid contribution -0.434 -1.400 -1.639 2.199 sum -21.841 12.188 5.258 25.559 Atomic orbital electron populations 1.21932 0.95222 1.01849 1.01427 1.22564 0.95775 0.99908 1.01007 1.19268 0.93028 0.89445 0.88933 0.96288 1.21310 0.91973 1.39167 1.01272 0.95117 1.25740 0.95825 0.95108 1.01807 1.70105 1.12856 1.47563 1.28598 0.86296 0.81879 0.77564 0.79531 1.20867 1.21552 1.14486 1.60462 1.30999 1.32825 1.06204 1.21752 0.89911 0.94153 0.96496 0.94042 1.21522 0.97003 0.96050 0.99375 1.22018 0.95027 0.99563 0.89600 1.61869 1.29846 1.14824 1.19112 1.21049 0.90617 0.89194 1.02165 1.19877 0.99720 0.95526 0.93481 1.21241 1.00702 0.96962 0.95682 1.21381 0.99676 0.93623 1.00440 1.21440 0.99804 1.00303 0.93393 1.21445 0.99852 0.96952 0.96631 1.21227 0.98406 0.93206 0.99978 1.22100 0.95479 0.88506 0.99865 1.21270 0.95290 0.98982 0.94519 0.90271 1.21518 0.97959 1.00043 0.98269 0.91929 0.91553 0.93711 0.93718 0.92860 0.92909 0.84854 0.92253 0.94323 0.95079 0.90722 0.88455 0.93709 0.86095 0.84937 0.84546 0.84465 0.85091 0.88693 0.94589 0.92401 0.94151 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.58 8.73 71.98 0.63 -3.95 16 2 C -0.15 -6.20 4.54 30.60 0.14 -6.06 16 3 C 0.20 9.24 1.59 44.17 0.07 9.31 16 4 H 0.02 0.90 5.65 -2.39 -0.01 0.89 16 5 C -0.50 -28.88 9.30 25.60 0.24 -28.64 16 6 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 7 C 0.01 0.69 5.36 84.66 0.45 1.14 16 8 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 9 Si 0.92 44.21 25.75 68.60 1.77 45.98 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.22 -9.48 5.30 99.48 0.53 -8.95 16 13 N -0.67 -26.35 5.10 -472.89 -2.41 -28.77 16 14 C 0.09 2.71 1.28 45.00 0.06 2.77 16 15 H 0.04 1.30 5.23 -2.39 -0.01 1.28 16 16 C -0.10 -3.33 5.16 30.65 0.16 -3.17 16 17 C 0.07 1.71 5.15 86.32 0.44 2.15 16 18 N -0.53 -11.59 3.93 -900.94 -3.54 -15.13 16 19 C 0.10 1.71 5.12 85.56 0.44 2.15 16 20 C -0.09 -1.67 4.89 -19.87 -0.10 -1.77 16 21 C -0.13 -2.50 7.88 22.27 0.18 -2.33 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 23 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 25 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 26 C 0.07 1.36 4.90 86.32 0.42 1.78 16 27 C -0.08 -2.00 2.65 -10.74 -0.03 -2.02 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 C -0.12 -3.20 8.57 71.98 0.62 -2.59 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.86 5.72 -2.38 -0.01 1.84 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.04 1.94 4.66 -2.39 -0.01 1.93 16 34 H 0.05 2.15 8.00 -2.39 -0.02 2.13 16 35 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.33 12.27 7.85 -89.69 -0.70 11.57 16 37 H 0.06 2.18 6.58 -2.39 -0.02 2.17 16 38 H 0.04 1.45 7.30 -2.39 -0.02 1.44 16 39 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 40 H 0.07 1.96 5.74 -2.39 -0.01 1.94 16 41 H 0.10 1.41 7.93 -2.38 -0.02 1.39 16 42 H 0.04 0.75 8.07 -2.39 -0.02 0.73 16 43 H 0.12 2.19 7.94 -2.91 -0.02 2.17 16 44 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 48 H 0.09 1.51 8.02 -2.39 -0.02 1.50 16 49 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.04 1.23 7.47 -2.38 -0.02 1.21 16 52 H 0.05 1.55 6.01 -2.39 -0.01 1.54 16 Total: -1.00 -67.55 382.84 0.72 -66.83 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.00 Total: 30.86 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 4.61 Total: -39.39 kcal Atomic # 7 Polarization: -98.61 SS G_CDS: -5.66 Total: -104.27 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.77 Total: 45.98 kcal Total: -67.55 0.72 -66.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038975.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.096 kcal (2) G-P(sol) polarization free energy of solvation -67.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds