Wall clock time and date at job start Tue Mar 31 2020 11:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 H 1.08996 * 109.47040 * 305.67205 * 3 2 1 5 5 C 1.50701 * 109.47195 * 185.66984 * 3 2 1 6 6 H 1.08001 * 119.99893 * 240.00243 * 5 3 2 7 7 C 1.37876 * 119.99951 * 60.00140 * 5 3 2 8 8 N 1.31516 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99881 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47508 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46946 * 119.99860 * 9 7 5 12 12 H 1.48503 * 109.47473 * 239.99975 * 9 7 5 13 13 N 1.46904 * 109.46831 * 65.67213 * 3 2 1 14 14 C 1.46900 * 110.99689 * 208.27221 * 13 3 2 15 15 H 1.08996 * 109.57951 * 32.56054 * 14 13 3 16 16 C 1.53126 * 109.51897 * 272.40681 * 14 13 3 17 17 C 1.53039 * 109.30746 * 182.42372 * 16 14 13 18 18 N 1.46928 * 109.48264 * 59.15877 * 17 16 14 19 19 C 1.46896 * 110.98583 * 174.18002 * 18 17 16 20 20 C 1.50697 * 109.47589 * 314.22728 * 19 18 17 21 21 C 1.38240 * 120.00191 * 269.73244 * 20 19 18 22 22 C 1.38233 * 119.99935 * 179.76006 * 21 20 19 23 23 C 1.38231 * 119.99976 * 0.48510 * 22 21 20 24 24 C 1.38241 * 120.00313 * 359.78787 * 23 22 21 25 25 C 1.38234 * 119.99741 * 359.95838 * 24 23 22 26 26 C 1.46849 * 111.21971 * 298.28274 * 18 17 16 27 27 C 1.53040 * 109.52261 * 61.73962 * 26 18 17 28 28 H 1.09003 * 109.49932 * 60.76163 * 27 26 18 29 29 C 1.52997 * 109.53282 * 180.85690 * 27 26 18 30 30 H 1.09001 * 109.47390 * 174.01466 * 1 2 3 31 31 H 1.09003 * 109.47753 * 294.01192 * 1 2 3 32 32 H 1.09004 * 109.47497 * 54.01790 * 1 2 3 33 33 H 1.09004 * 109.47437 * 240.00087 * 2 1 3 34 34 H 1.09000 * 109.47151 * 119.99772 * 2 1 3 35 35 H 0.96995 * 120.00137 * 179.97438 * 8 7 5 36 36 H 1.00899 * 111.00202 * 332.21962 * 13 3 2 37 37 H 1.08996 * 109.50212 * 302.37985 * 16 14 13 38 38 H 1.08994 * 109.50231 * 62.46298 * 16 14 13 39 39 H 1.09005 * 109.46277 * 179.21826 * 17 16 14 40 40 H 1.09001 * 109.46089 * 299.17835 * 17 16 14 41 41 H 1.09006 * 109.47239 * 74.22859 * 19 18 17 42 42 H 1.09002 * 109.47029 * 194.22847 * 19 18 17 43 43 H 1.08001 * 119.99477 * 359.97438 * 21 20 19 44 44 H 1.08000 * 119.99983 * 180.24855 * 22 21 20 45 45 H 1.08001 * 119.99877 * 179.76840 * 23 22 21 46 46 H 1.07994 * 119.99979 * 179.97438 * 24 23 22 47 47 H 1.07994 * 120.00131 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.46071 * 301.72717 * 26 18 17 49 49 H 1.08998 * 109.45458 * 181.75199 * 26 18 17 50 50 H 1.09006 * 109.46826 * 179.82165 * 29 27 26 51 51 H 1.09000 * 109.47701 * 299.82278 * 29 27 26 52 52 H 1.09000 * 109.47133 * 59.82993 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1404 6 1 4.1542 1.8864 0.6308 7 6 4.1295 0.8833 -1.2533 8 7 3.3821 0.3452 -2.1921 9 14 5.9893 0.8868 -1.4276 10 1 6.5963 1.5472 -0.2440 11 1 6.4805 -0.5116 -1.5196 12 1 6.3699 1.6271 -2.6574 13 7 1.6652 2.0943 1.2621 14 6 1.5088 3.5436 1.0798 15 1 1.1367 3.7474 0.0758 16 6 2.8625 4.2326 1.2735 17 6 2.6829 5.7467 1.1425 18 7 1.7248 6.2158 2.1529 19 6 1.6311 7.6818 2.1485 20 6 3.0162 8.2736 2.1033 21 6 3.6859 8.5562 3.2792 22 6 4.9584 9.0945 3.2377 23 6 5.5574 9.3596 2.0204 24 6 4.8855 9.0823 0.8445 25 6 3.6151 8.5391 0.8859 26 6 0.4044 5.6035 1.9580 27 6 0.5169 4.0851 2.1129 28 1 0.8701 3.8469 3.1163 29 6 -0.8546 3.4450 1.8889 30 1 -0.3634 -1.0221 -0.1072 31 1 -0.3635 0.4182 0.9387 32 1 -0.3634 0.6038 -0.8316 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7965 -0.0496 -2.9752 36 1 0.8260 1.6854 1.6450 37 1 3.2525 3.9967 2.2635 38 1 3.5612 3.8819 0.5140 39 1 3.6427 6.2408 1.2937 40 1 2.3059 5.9830 0.1474 41 1 1.0682 8.0073 1.2736 42 1 1.1225 8.0160 3.0528 43 1 3.2161 8.3531 4.2303 44 1 5.4832 9.3115 4.1564 45 1 6.5501 9.7837 1.9880 46 1 5.3534 9.2898 -0.1065 47 1 3.0900 8.3229 -0.0327 48 1 0.0381 5.8404 0.9591 49 1 -0.2902 5.9940 2.7017 50 1 -0.7726 2.3634 1.9963 51 1 -1.5602 3.8308 2.6246 52 1 -1.2079 3.6847 0.8859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398038979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:14 Heat of formation + Delta-G solvation = 19.431063 kcal Electronic energy + Delta-G solvation = -27585.475723 eV Core-core repulsion = 24162.950354 eV Total energy + Delta-G solvation = -3422.525369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88922 -38.63681 -36.24720 -34.16551 -31.95942 -31.72804 -31.14849 -30.93256 -29.23768 -26.61537 -26.33213 -25.18740 -22.91430 -22.67184 -21.84080 -21.81107 -20.43938 -19.54237 -19.02888 -16.77466 -16.24173 -15.84997 -15.51421 -15.28264 -14.85117 -14.74424 -14.45989 -13.95774 -13.90637 -13.43052 -13.37923 -13.14423 -12.86098 -12.78978 -12.64089 -12.34713 -12.10709 -11.92034 -11.71620 -11.64797 -11.48218 -11.08841 -11.06863 -10.93106 -10.86159 -10.60840 -10.57118 -10.47741 -10.27405 -10.00827 -9.69186 -9.57355 -9.26483 -8.94858 -8.93774 -8.81068 -8.28914 -8.09901 -7.13942 -5.91845 -3.94463 1.27137 1.36485 3.33589 3.41916 3.47491 3.65052 4.22234 4.48793 4.67266 4.78742 4.94900 5.04786 5.05839 5.08896 5.25780 5.32629 5.37046 5.39203 5.44101 5.53943 5.62787 5.65142 5.68656 5.79301 5.91196 5.92935 5.94346 6.00225 6.12262 6.13324 6.18258 6.24614 6.26826 6.39202 6.42984 6.45954 6.47112 6.55430 6.56191 6.58340 6.85970 6.89828 6.94071 7.10961 7.13323 7.24609 7.27772 7.36276 7.57163 7.83047 7.99831 8.41418 8.48043 8.84986 9.14128 9.69971 11.13558 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004146 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.399274 B = 6751.450102 C = 8737.910082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.485 4.485 6 H 0.065 0.935 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.683 5.683 14 C 0.107 3.893 15 H 0.029 0.971 16 C -0.102 4.102 17 C 0.052 3.948 18 N -0.530 5.530 19 C 0.092 3.908 20 C -0.078 4.078 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.112 4.112 26 C 0.067 3.933 27 C -0.093 4.093 28 H 0.082 0.918 29 C -0.149 4.149 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.257 0.743 36 H 0.318 0.682 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.029 0.971 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.052 0.948 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.145 15.803 8.300 18.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.316 5.316 14 C -0.004 4.004 15 H 0.047 0.953 16 C -0.140 4.140 17 C -0.075 4.075 18 N -0.254 5.254 19 C -0.035 4.035 20 C -0.078 4.078 21 C -0.119 4.119 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.061 4.061 27 C -0.112 4.112 28 H 0.101 0.899 29 C -0.207 4.207 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.138 0.862 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.048 0.952 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.316 15.592 8.801 18.209 hybrid contribution -0.106 0.182 -1.593 1.607 sum -3.422 15.774 7.207 17.677 Atomic orbital electron populations 1.21891 0.99722 0.99622 0.99425 1.21802 0.91137 1.00697 1.03016 1.19223 0.95490 0.89755 0.84286 0.98163 1.21318 0.91350 1.35721 1.03989 0.91708 1.24958 0.97804 0.95846 0.96039 1.69883 1.34435 1.39897 1.09610 0.86571 0.86234 0.77571 0.77840 1.19711 1.21231 1.21368 1.60753 1.38181 1.01133 1.31484 1.21401 0.93915 0.89907 0.95173 0.95270 1.21658 0.98210 0.90745 1.03434 1.22343 0.95864 0.97577 0.91752 1.62132 1.09033 1.04300 1.49969 1.21071 0.92894 0.88342 1.01171 1.19765 0.96337 0.98435 0.93271 1.21019 0.94778 0.98212 0.97864 1.21137 0.95426 0.99686 0.97813 1.21137 0.99774 1.00512 0.92687 1.21117 0.94992 0.99481 0.98321 1.21111 0.95627 0.98905 0.97399 1.22080 0.89797 0.94985 0.99228 1.21378 0.95266 0.93221 1.01365 0.89916 1.21856 0.96505 1.01142 1.01166 0.94467 0.94700 0.93978 0.88294 0.94131 0.93296 0.86234 0.91453 0.89523 0.90514 0.95610 0.94336 0.90170 0.85951 0.86217 0.86332 0.86170 0.86350 0.95243 0.91257 0.92021 0.92922 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.65 37.15 0.36 -2.52 16 2 C -0.13 -3.01 5.34 -26.73 -0.14 -3.15 16 3 C 0.22 5.40 2.03 -68.86 -0.14 5.26 16 4 H 0.00 0.02 7.34 -51.93 -0.38 -0.36 16 5 C -0.48 -13.14 7.45 -34.44 -0.26 -13.40 16 6 H 0.06 1.80 6.96 -52.49 -0.37 1.43 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.87 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.68 -14.30 6.16 -100.82 -0.62 -14.92 16 14 C 0.11 1.99 2.01 -67.59 -0.14 1.85 16 15 H 0.03 0.61 7.35 -51.93 -0.38 0.23 16 16 C -0.10 -1.93 5.21 -26.65 -0.14 -2.07 16 17 C 0.05 0.83 4.58 -3.79 -0.02 0.81 16 18 N -0.53 -7.36 4.80 -236.04 -1.13 -8.49 16 19 C 0.09 1.07 5.43 -4.98 -0.03 1.05 16 20 C -0.08 -0.92 4.13 -104.62 -0.43 -1.35 16 21 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 22 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.11 -1.31 7.79 -39.58 -0.31 -1.62 16 26 C 0.07 0.90 4.71 -3.83 -0.02 0.88 16 27 C -0.09 -1.39 2.50 -90.54 -0.23 -1.62 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 C -0.15 -1.98 9.01 37.16 0.33 -1.65 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.60 6.19 -51.93 -0.32 0.28 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 2.62 5.94 -51.93 -0.31 2.32 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.32 6.12 4.21 -39.29 -0.17 5.96 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.89 6.30 -51.93 -0.33 1.57 16 39 H 0.08 1.22 5.65 -51.93 -0.29 0.93 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.04 0.43 8.02 -51.93 -0.42 0.02 16 42 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 47 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 50 H 0.06 0.86 5.84 -51.93 -0.30 0.56 16 51 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -28.34 389.96 -12.25 -40.59 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -9.16 Total: 8.00 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -2.82 Total: -22.72 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -1.13 Total: -48.29 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.34 -12.25 -40.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.024 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds