Wall clock time and date at job start Tue Mar 31 2020 11:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47132 * 2 1 4 4 H 1.08996 * 109.47040 * 305.67205 * 3 2 1 5 5 C 1.50701 * 109.47195 * 185.66984 * 3 2 1 6 6 H 1.08001 * 119.99893 * 240.00243 * 5 3 2 7 7 C 1.37876 * 119.99951 * 60.00140 * 5 3 2 8 8 N 1.31516 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99881 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47508 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46946 * 119.99860 * 9 7 5 12 12 H 1.48503 * 109.47473 * 239.99975 * 9 7 5 13 13 N 1.46904 * 109.46831 * 65.67213 * 3 2 1 14 14 C 1.46900 * 110.99689 * 208.27221 * 13 3 2 15 15 H 1.08996 * 109.57951 * 32.56054 * 14 13 3 16 16 C 1.53126 * 109.51897 * 272.40681 * 14 13 3 17 17 C 1.53039 * 109.30746 * 182.42372 * 16 14 13 18 18 N 1.46928 * 109.48264 * 59.15877 * 17 16 14 19 19 C 1.46896 * 110.98583 * 174.18002 * 18 17 16 20 20 C 1.50697 * 109.47589 * 314.22728 * 19 18 17 21 21 C 1.38240 * 120.00191 * 269.73244 * 20 19 18 22 22 C 1.38233 * 119.99935 * 179.76006 * 21 20 19 23 23 C 1.38231 * 119.99976 * 0.48510 * 22 21 20 24 24 C 1.38241 * 120.00313 * 359.78787 * 23 22 21 25 25 C 1.38234 * 119.99741 * 359.95838 * 24 23 22 26 26 C 1.46849 * 111.21971 * 298.28274 * 18 17 16 27 27 C 1.53040 * 109.52261 * 61.73962 * 26 18 17 28 28 H 1.09003 * 109.49932 * 60.76163 * 27 26 18 29 29 C 1.52997 * 109.53282 * 180.85690 * 27 26 18 30 30 H 1.09001 * 109.47390 * 174.01466 * 1 2 3 31 31 H 1.09003 * 109.47753 * 294.01192 * 1 2 3 32 32 H 1.09004 * 109.47497 * 54.01790 * 1 2 3 33 33 H 1.09004 * 109.47437 * 240.00087 * 2 1 3 34 34 H 1.09000 * 109.47151 * 119.99772 * 2 1 3 35 35 H 0.96995 * 120.00137 * 179.97438 * 8 7 5 36 36 H 1.00899 * 111.00202 * 332.21962 * 13 3 2 37 37 H 1.08996 * 109.50212 * 302.37985 * 16 14 13 38 38 H 1.08994 * 109.50231 * 62.46298 * 16 14 13 39 39 H 1.09005 * 109.46277 * 179.21826 * 17 16 14 40 40 H 1.09001 * 109.46089 * 299.17835 * 17 16 14 41 41 H 1.09006 * 109.47239 * 74.22859 * 19 18 17 42 42 H 1.09002 * 109.47029 * 194.22847 * 19 18 17 43 43 H 1.08001 * 119.99477 * 359.97438 * 21 20 19 44 44 H 1.08000 * 119.99983 * 180.24855 * 22 21 20 45 45 H 1.08001 * 119.99877 * 179.76840 * 23 22 21 46 46 H 1.07994 * 119.99979 * 179.97438 * 24 23 22 47 47 H 1.07994 * 120.00131 * 179.97438 * 25 24 23 48 48 H 1.08997 * 109.46071 * 301.72717 * 26 18 17 49 49 H 1.08998 * 109.45458 * 181.75199 * 26 18 17 50 50 H 1.09006 * 109.46826 * 179.82165 * 29 27 26 51 51 H 1.09000 * 109.47701 * 299.82278 * 29 27 26 52 52 H 1.09000 * 109.47133 * 59.82993 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4448 -0.1404 6 1 4.1542 1.8864 0.6308 7 6 4.1295 0.8833 -1.2533 8 7 3.3821 0.3452 -2.1921 9 14 5.9893 0.8868 -1.4276 10 1 6.5963 1.5472 -0.2440 11 1 6.4805 -0.5116 -1.5196 12 1 6.3699 1.6271 -2.6574 13 7 1.6652 2.0943 1.2621 14 6 1.5088 3.5436 1.0798 15 1 1.1367 3.7474 0.0758 16 6 2.8625 4.2326 1.2735 17 6 2.6829 5.7467 1.1425 18 7 1.7248 6.2158 2.1529 19 6 1.6311 7.6818 2.1485 20 6 3.0162 8.2736 2.1033 21 6 3.6859 8.5562 3.2792 22 6 4.9584 9.0945 3.2377 23 6 5.5574 9.3596 2.0204 24 6 4.8855 9.0823 0.8445 25 6 3.6151 8.5391 0.8859 26 6 0.4044 5.6035 1.9580 27 6 0.5169 4.0851 2.1129 28 1 0.8701 3.8469 3.1163 29 6 -0.8546 3.4450 1.8889 30 1 -0.3634 -1.0221 -0.1072 31 1 -0.3635 0.4182 0.9387 32 1 -0.3634 0.6038 -0.8316 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7965 -0.0496 -2.9752 36 1 0.8260 1.6854 1.6450 37 1 3.2525 3.9967 2.2635 38 1 3.5612 3.8819 0.5140 39 1 3.6427 6.2408 1.2937 40 1 2.3059 5.9830 0.1474 41 1 1.0682 8.0073 1.2736 42 1 1.1225 8.0160 3.0528 43 1 3.2161 8.3531 4.2303 44 1 5.4832 9.3115 4.1564 45 1 6.5501 9.7837 1.9880 46 1 5.3534 9.2898 -0.1065 47 1 3.0900 8.3229 -0.0327 48 1 0.0381 5.8404 0.9591 49 1 -0.2902 5.9940 2.7017 50 1 -0.7726 2.3634 1.9963 51 1 -1.5602 3.8308 2.6246 52 1 -1.2079 3.6847 0.8859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398038979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:13 Heat of formation + Delta-G solvation = 4.000498 kcal Electronic energy + Delta-G solvation = -27586.144843 eV Core-core repulsion = 24162.950354 eV Total energy + Delta-G solvation = -3423.194489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95016 -39.77379 -37.79688 -35.60613 -33.83854 -33.06103 -32.38615 -31.75548 -30.67982 -28.44284 -27.45473 -26.47632 -24.68132 -23.53984 -23.23939 -22.90421 -21.52027 -21.33466 -20.46852 -18.30288 -17.60260 -17.14670 -16.80247 -16.45155 -16.25954 -16.07387 -15.74460 -15.50018 -15.08709 -14.84822 -14.64437 -14.38647 -14.23741 -14.08947 -13.72691 -13.55797 -13.47698 -13.34793 -13.05132 -12.94960 -12.77611 -12.73395 -12.65691 -12.47551 -12.14591 -11.99051 -11.90325 -11.83123 -11.80074 -11.70419 -11.50656 -11.18125 -10.98378 -10.77746 -10.39278 -9.77366 -9.70341 -9.19388 -8.95384 -8.04158 -6.13693 0.43190 0.53399 1.37576 1.40393 1.51847 2.44285 2.74974 3.18529 3.21152 3.59840 3.74849 3.87974 3.97146 4.00522 4.14397 4.17940 4.29891 4.33064 4.42292 4.43394 4.50291 4.55800 4.56895 4.63456 4.63906 4.70746 4.71174 4.73035 4.82340 4.84459 4.88785 5.03601 5.09210 5.12661 5.13588 5.19104 5.21902 5.22705 5.31506 5.39754 5.46090 5.52099 5.58583 5.64891 5.66322 5.72387 5.79913 5.94152 6.10893 6.12073 6.20724 6.41521 6.60111 7.00368 7.08348 7.54465 8.99221 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004146 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.399274 B = 6751.450102 C = 8737.910082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.229 3.771 4 H -0.036 1.036 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.108 3.892 15 H 0.004 0.996 16 C -0.096 4.096 17 C 0.068 3.932 18 N -0.533 5.533 19 C 0.095 3.905 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.128 4.128 26 C 0.070 3.930 27 C -0.084 4.084 28 H 0.080 0.920 29 C -0.145 4.145 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.258 0.742 36 H 0.329 0.671 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.017 0.983 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.135 0.865 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.115 0.885 48 H 0.026 0.974 49 H 0.100 0.900 50 H 0.054 0.946 51 H 0.083 0.917 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 17.052 10.153 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.121 3.879 4 H -0.019 1.019 5 C -0.535 4.535 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.316 5.316 14 C -0.002 4.002 15 H 0.022 0.978 16 C -0.134 4.134 17 C -0.060 4.060 18 N -0.258 5.258 19 C -0.031 4.031 20 C -0.092 4.092 21 C -0.128 4.128 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.059 4.059 27 C -0.103 4.103 28 H 0.098 0.902 29 C -0.202 4.202 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.150 0.850 47 H 0.133 0.867 48 H 0.045 0.955 49 H 0.119 0.881 50 H 0.073 0.927 51 H 0.102 0.898 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.009 16.850 10.668 20.342 hybrid contribution 0.139 -0.161 -2.150 2.160 sum -3.870 16.689 8.519 19.133 Atomic orbital electron populations 1.21750 0.96301 1.01045 1.00406 1.21632 0.94237 0.99246 1.01157 1.18954 0.94040 0.90360 0.84529 1.01882 1.21532 0.92810 1.35422 1.03775 0.92984 1.25624 1.01687 0.95702 0.95867 1.70007 1.35861 1.40467 1.09934 0.85674 0.81636 0.77651 0.77707 1.19586 1.20637 1.20985 1.60648 1.39015 1.02494 1.29465 1.21414 0.94900 0.88593 0.95327 0.97797 1.21501 0.97499 0.93191 1.01239 1.22055 0.96715 0.95127 0.92092 1.62107 1.08928 1.06026 1.48692 1.21133 0.93213 0.86454 1.02344 1.19870 0.96670 0.99091 0.93586 1.21254 0.95242 0.98190 0.98110 1.21465 0.95318 0.99012 0.98786 1.21460 1.00670 1.00065 0.92469 1.21372 0.94911 0.99441 0.99379 1.21230 0.96268 0.99672 0.97506 1.22117 0.90001 0.93605 1.00128 1.21295 0.95042 0.94613 0.99394 0.90165 1.21824 0.95881 1.00598 1.01931 0.92439 0.92313 0.94720 0.91490 0.94511 0.93306 0.84984 0.92463 0.93457 0.90634 0.96438 0.93938 0.88092 0.84755 0.84051 0.84261 0.84992 0.86693 0.95544 0.88141 0.92742 0.89815 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.65 71.98 0.69 -4.51 16 2 C -0.12 -5.94 5.34 30.59 0.16 -5.77 16 3 C 0.23 11.68 2.03 44.17 0.09 11.77 16 4 H -0.04 -2.09 7.34 -2.39 -0.02 -2.11 16 5 C -0.50 -27.95 7.45 25.60 0.19 -27.76 16 6 H 0.05 3.00 6.96 -2.91 -0.02 2.98 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 N -0.68 -29.12 6.16 -472.90 -2.92 -32.04 16 14 C 0.11 4.12 2.01 45.00 0.09 4.21 16 15 H 0.00 0.18 7.35 -2.39 -0.02 0.16 16 16 C -0.10 -3.75 5.21 30.65 0.16 -3.59 16 17 C 0.07 2.20 4.58 86.31 0.40 2.59 16 18 N -0.53 -14.05 4.80 -900.69 -4.32 -18.37 16 19 C 0.10 2.03 5.43 85.56 0.46 2.49 16 20 C -0.09 -2.07 4.13 -19.86 -0.08 -2.15 16 21 C -0.11 -2.26 9.70 22.27 0.22 -2.04 16 22 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 25 C -0.13 -2.97 7.79 22.27 0.17 -2.79 16 26 C 0.07 1.70 4.71 86.33 0.41 2.11 16 27 C -0.08 -2.40 2.50 -10.74 -0.03 -2.43 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 C -0.14 -3.51 9.01 71.98 0.65 -2.86 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.92 6.19 -2.39 -0.01 1.91 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.07 3.66 5.94 -2.38 -0.01 3.64 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.33 12.51 4.21 -89.69 -0.38 12.14 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 2.20 6.30 -2.39 -0.02 2.18 16 39 H 0.08 2.44 5.65 -2.38 -0.01 2.43 16 40 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.04 0.88 8.02 -2.38 -0.02 0.86 16 42 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 45 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 48 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.10 1.91 8.12 -2.39 -0.02 1.89 16 50 H 0.05 1.39 5.84 -2.38 -0.01 1.38 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -63.44 389.96 0.23 -63.21 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.50 Total: 30.40 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 4.70 Total: -36.80 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -7.00 Total: -104.10 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.44 0.23 -63.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.213 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds