Wall clock time and date at job start Tue Mar 31 2020 11:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 H 1.09002 * 109.47087 * 305.64731 * 3 2 1 5 5 C 1.50698 * 109.47126 * 185.64542 * 3 2 1 6 6 H 1.07998 * 119.99831 * 240.00460 * 5 3 2 7 7 C 1.37882 * 119.99963 * 59.99814 * 5 3 2 8 8 N 1.31518 * 119.99764 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47362 * 120.00126 * 9 7 5 12 12 H 1.48499 * 109.47302 * 239.99789 * 9 7 5 13 13 N 1.46905 * 109.47092 * 65.64301 * 3 2 1 14 14 C 1.46900 * 110.99663 * 204.75166 * 13 3 2 15 15 H 1.08997 * 109.57525 * 326.95177 * 14 13 3 16 16 C 1.53113 * 109.52179 * 87.11609 * 14 13 3 17 17 C 1.53040 * 109.27897 * 177.55718 * 16 14 13 18 18 N 1.46854 * 109.51962 * 300.82058 * 17 16 14 19 19 C 1.46903 * 110.99875 * 185.83674 * 18 17 16 20 20 C 1.50710 * 109.46934 * 45.79080 * 19 18 17 21 21 C 1.38235 * 119.99694 * 269.72544 * 20 19 18 22 22 C 1.38237 * 119.99873 * 179.80752 * 21 20 19 23 23 C 1.38230 * 119.99799 * 0.40121 * 22 21 20 24 24 C 1.38236 * 120.00091 * 359.85463 * 23 22 21 25 25 C 1.38232 * 120.00033 * 89.99928 * 20 19 18 26 26 C 1.46845 * 111.19809 * 61.74120 * 18 17 16 27 27 C 1.53033 * 109.52326 * 298.25693 * 26 18 17 28 28 H 1.09007 * 109.50195 * 179.12670 * 27 26 18 29 29 C 1.53004 * 109.50067 * 299.23838 * 27 26 18 30 30 H 1.09002 * 109.47270 * 54.18977 * 1 2 3 31 31 H 1.09000 * 109.46978 * 174.19156 * 1 2 3 32 32 H 1.09000 * 109.47289 * 294.18827 * 1 2 3 33 33 H 1.08997 * 109.47129 * 240.00223 * 2 1 3 34 34 H 1.08994 * 109.47211 * 119.99467 * 2 1 3 35 35 H 0.97003 * 119.99332 * 179.97438 * 8 7 5 36 36 H 1.00896 * 111.00187 * 328.70918 * 13 3 2 37 37 H 1.09001 * 109.50353 * 297.49575 * 16 14 13 38 38 H 1.09005 * 109.50510 * 57.57769 * 16 14 13 39 39 H 1.08996 * 109.46476 * 180.80631 * 17 16 14 40 40 H 1.09001 * 109.46217 * 60.83216 * 17 16 14 41 41 H 1.08992 * 109.47507 * 165.78484 * 19 18 17 42 42 H 1.08997 * 109.47512 * 285.79235 * 19 18 17 43 43 H 1.08005 * 120.00257 * 0.02562 * 21 20 19 44 44 H 1.08004 * 120.00110 * 180.22798 * 22 21 20 45 45 H 1.08000 * 120.00297 * 179.82714 * 23 22 21 46 46 H 1.08003 * 120.00145 * 179.97438 * 24 23 22 47 47 H 1.07998 * 120.00016 * 359.97438 * 25 20 19 48 48 H 1.09002 * 109.46208 * 58.27471 * 26 18 17 49 49 H 1.09001 * 109.45796 * 178.23707 * 26 18 17 50 50 H 1.08994 * 109.47104 * 60.00164 * 29 27 26 51 51 H 1.08998 * 109.46901 * 180.02562 * 29 27 26 52 52 H 1.08997 * 109.47222 * 299.99913 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9848 -0.8351 5 6 3.5405 1.4449 -0.1398 6 1 4.1539 1.8865 0.6316 7 6 4.1301 0.8831 -1.2524 8 7 3.3829 0.3457 -2.1918 9 14 5.9900 0.8854 -1.4252 10 1 6.5965 1.5451 -0.2411 11 1 6.4803 -0.5133 -1.5172 12 1 6.3720 1.6256 -2.6546 13 7 1.6646 2.0946 1.2618 14 6 1.5898 3.5526 1.0988 15 1 2.3308 3.8770 0.3683 16 6 0.1901 3.9423 0.6156 17 6 0.0993 5.4661 0.5063 18 7 0.3695 6.0691 1.8177 19 6 0.1555 7.5221 1.7831 20 6 -1.1424 7.8221 1.0784 21 6 -1.1554 8.0260 -0.2888 22 6 -2.3465 8.2972 -0.9358 23 6 -3.5233 8.3727 -0.2145 24 6 -3.5094 8.1740 1.1534 25 6 -2.3190 7.8989 1.7999 26 6 1.7254 5.7477 2.2807 27 6 1.8647 4.2324 2.4430 28 1 2.8761 3.9931 2.7718 29 6 0.8579 3.7354 3.4823 30 1 -0.3634 0.6013 -0.8334 31 1 -0.3633 -1.0224 -0.1040 32 1 -0.3634 0.4211 0.9374 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.7978 -0.0492 -2.9747 36 1 0.7948 1.7251 1.6150 37 1 0.0049 3.4957 -0.3613 38 1 -0.5536 3.5830 1.3270 39 1 -0.9006 5.7476 0.1761 40 1 0.8339 5.8228 -0.2158 41 1 0.1132 7.9075 2.8018 42 1 0.9776 7.9978 1.2485 43 1 -0.2355 7.9699 -0.8520 44 1 -2.3573 8.4529 -2.0045 45 1 -4.4535 8.5874 -0.7196 46 1 -4.4288 8.2334 1.7171 47 1 -2.3082 7.7435 2.8686 48 1 2.4524 6.1032 1.5504 49 1 1.9066 6.2339 3.2393 50 1 -0.1530 3.9737 3.1518 51 1 0.9578 2.6561 3.5978 52 1 1.0519 4.2222 4.4380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398038981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:18 Heat of formation + Delta-G solvation = 19.723014 kcal Electronic energy + Delta-G solvation = -27591.479302 eV Core-core repulsion = 24168.966592 eV Total energy + Delta-G solvation = -3422.512709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.00649 -38.75013 -36.21368 -34.15049 -32.05956 -31.30510 -31.15929 -30.93100 -29.35985 -26.60187 -26.33113 -25.05999 -22.98491 -22.87831 -22.26415 -21.85966 -20.74399 -19.51204 -18.18511 -16.89197 -16.18001 -16.11299 -15.44298 -15.41060 -14.89098 -14.55081 -14.33382 -14.05209 -13.98315 -13.64312 -13.52624 -13.07454 -12.85807 -12.71670 -12.59899 -12.43295 -12.11612 -12.04182 -11.71306 -11.41179 -11.25865 -11.14580 -11.09025 -11.08663 -10.88594 -10.79481 -10.58144 -10.30456 -10.12589 -9.93252 -9.90392 -9.62293 -9.32630 -9.03848 -8.96298 -8.88654 -8.31742 -8.11565 -7.09240 -5.93342 -3.96931 1.19909 1.28811 3.32256 3.40441 3.45611 3.58799 4.19001 4.47354 4.61566 4.72781 4.87624 4.98406 5.08122 5.17658 5.20422 5.32806 5.37401 5.37464 5.45530 5.53787 5.59144 5.66868 5.72458 5.87693 5.91767 5.92253 5.97701 6.00874 6.14827 6.16044 6.20788 6.21124 6.32376 6.34745 6.38525 6.42454 6.45358 6.51398 6.62902 6.72250 6.77248 6.86776 6.89241 6.95117 7.14505 7.18846 7.26016 7.28855 7.58775 7.83313 7.97391 8.40087 8.46223 8.85195 9.12053 9.68026 11.11800 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003237 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.648989 B = 8649.062727 C = 8701.467121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.679 5.679 14 C 0.101 3.899 15 H 0.075 0.925 16 C -0.143 4.143 17 C 0.058 3.942 18 N -0.526 5.526 19 C 0.092 3.908 20 C -0.077 4.077 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.100 4.100 26 C 0.061 3.939 27 C -0.075 4.075 28 H 0.076 0.924 29 C -0.132 4.132 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.257 0.743 36 H 0.318 0.682 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.031 0.969 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.056 0.944 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.672 15.113 6.636 20.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.309 5.309 14 C -0.010 4.010 15 H 0.093 0.907 16 C -0.183 4.183 17 C -0.070 4.070 18 N -0.250 5.250 19 C -0.036 4.036 20 C -0.078 4.078 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.119 4.119 26 C -0.068 4.068 27 C -0.094 4.094 28 H 0.094 0.906 29 C -0.189 4.189 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.050 0.950 49 H 0.088 0.912 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.295 14.797 7.043 19.903 hybrid contribution 0.717 0.367 -1.439 1.649 sum -10.577 15.164 5.604 19.319 Atomic orbital electron populations 1.21872 0.99653 0.99584 0.99506 1.21760 0.91177 1.00544 1.02926 1.19151 0.95208 0.89831 0.84595 0.98186 1.21273 0.91444 1.36067 1.04016 0.92125 1.24957 0.97915 0.95799 0.95956 1.69891 1.34451 1.39777 1.09555 0.86535 0.86085 0.77565 0.77771 1.19825 1.21190 1.21350 1.60751 1.35766 1.01777 1.32563 1.21453 0.94355 0.89955 0.95264 0.90680 1.22366 0.99976 0.94423 1.01511 1.22143 1.00527 0.95345 0.88965 1.62094 1.27085 1.08303 1.27552 1.21085 0.93195 0.89329 0.99958 1.19795 0.95310 0.99005 0.93648 1.21127 0.98301 0.99619 0.94097 1.21121 0.92678 1.00317 0.99849 1.21136 0.98053 1.00586 0.94398 1.21145 0.97964 1.00255 0.94726 1.21026 0.91882 0.98920 1.00060 1.22184 0.87776 0.97431 0.99366 1.21141 0.99994 0.91761 0.96497 0.90576 1.21655 0.99510 1.00728 0.97033 0.93986 0.94523 0.94612 0.88400 0.94154 0.93258 0.86446 0.91932 0.91502 0.90795 0.95275 0.90061 0.94200 0.86323 0.86182 0.86336 0.86221 0.85929 0.95035 0.91176 0.92204 0.92504 0.94311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.64 37.16 0.36 -2.54 16 2 C -0.13 -2.96 5.36 -26.73 -0.14 -3.10 16 3 C 0.22 5.37 1.84 -68.86 -0.13 5.24 16 4 H 0.00 0.01 7.30 -51.93 -0.38 -0.36 16 5 C -0.49 -13.40 8.50 -34.44 -0.29 -13.69 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.50 11.29 55.43 0.63 -24.87 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 N -0.68 -14.02 5.46 -100.82 -0.55 -14.57 16 14 C 0.10 1.85 2.03 -67.59 -0.14 1.71 16 15 H 0.07 1.61 7.62 -51.93 -0.40 1.21 16 16 C -0.14 -2.35 4.99 -26.65 -0.13 -2.48 16 17 C 0.06 0.84 4.58 -3.83 -0.02 0.82 16 18 N -0.53 -6.81 4.08 -236.11 -0.96 -7.77 16 19 C 0.09 1.01 5.43 -4.97 -0.03 0.98 16 20 C -0.08 -0.85 4.11 -104.62 -0.43 -1.28 16 21 C -0.11 -1.23 7.82 -39.58 -0.31 -1.54 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.10 -1.03 9.70 -39.59 -0.38 -1.42 16 26 C 0.06 0.82 4.86 -3.84 -0.02 0.80 16 27 C -0.07 -1.17 2.94 -90.54 -0.27 -1.43 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 C -0.13 -1.91 8.45 37.16 0.31 -1.59 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.63 6.66 -51.93 -0.35 0.28 16 33 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.32 6.14 5.63 -39.29 -0.22 5.92 16 37 H 0.06 1.13 7.62 -51.93 -0.40 0.73 16 38 H 0.07 1.08 6.53 -51.93 -0.34 0.74 16 39 H 0.07 1.05 5.65 -51.93 -0.29 0.75 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.04 0.44 8.02 -51.93 -0.42 0.02 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 50 H 0.06 0.87 6.01 -51.93 -0.31 0.56 16 51 H 0.06 0.88 7.23 -51.93 -0.38 0.50 16 52 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -28.08 391.19 -12.16 -40.23 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -9.24 Total: 7.40 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.90 Total: -22.85 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.89 Total: -47.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.08 -12.16 -40.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.957 kcal (2) G-P(sol) polarization free energy of solvation -28.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds