Wall clock time and date at job start Tue Mar 31 2020 11:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46940 * 2 1 4 4 H 1.09002 * 109.47087 * 305.64731 * 3 2 1 5 5 C 1.50698 * 109.47126 * 185.64542 * 3 2 1 6 6 H 1.07998 * 119.99831 * 240.00460 * 5 3 2 7 7 C 1.37882 * 119.99963 * 59.99814 * 5 3 2 8 8 N 1.31518 * 119.99764 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47466 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47362 * 120.00126 * 9 7 5 12 12 H 1.48499 * 109.47302 * 239.99789 * 9 7 5 13 13 N 1.46905 * 109.47092 * 65.64301 * 3 2 1 14 14 C 1.46900 * 110.99663 * 204.75166 * 13 3 2 15 15 H 1.08997 * 109.57525 * 326.95177 * 14 13 3 16 16 C 1.53113 * 109.52179 * 87.11609 * 14 13 3 17 17 C 1.53040 * 109.27897 * 177.55718 * 16 14 13 18 18 N 1.46854 * 109.51962 * 300.82058 * 17 16 14 19 19 C 1.46903 * 110.99875 * 185.83674 * 18 17 16 20 20 C 1.50710 * 109.46934 * 45.79080 * 19 18 17 21 21 C 1.38235 * 119.99694 * 269.72544 * 20 19 18 22 22 C 1.38237 * 119.99873 * 179.80752 * 21 20 19 23 23 C 1.38230 * 119.99799 * 0.40121 * 22 21 20 24 24 C 1.38236 * 120.00091 * 359.85463 * 23 22 21 25 25 C 1.38232 * 120.00033 * 89.99928 * 20 19 18 26 26 C 1.46845 * 111.19809 * 61.74120 * 18 17 16 27 27 C 1.53033 * 109.52326 * 298.25693 * 26 18 17 28 28 H 1.09007 * 109.50195 * 179.12670 * 27 26 18 29 29 C 1.53004 * 109.50067 * 299.23838 * 27 26 18 30 30 H 1.09002 * 109.47270 * 54.18977 * 1 2 3 31 31 H 1.09000 * 109.46978 * 174.19156 * 1 2 3 32 32 H 1.09000 * 109.47289 * 294.18827 * 1 2 3 33 33 H 1.08997 * 109.47129 * 240.00223 * 2 1 3 34 34 H 1.08994 * 109.47211 * 119.99467 * 2 1 3 35 35 H 0.97003 * 119.99332 * 179.97438 * 8 7 5 36 36 H 1.00896 * 111.00187 * 328.70918 * 13 3 2 37 37 H 1.09001 * 109.50353 * 297.49575 * 16 14 13 38 38 H 1.09005 * 109.50510 * 57.57769 * 16 14 13 39 39 H 1.08996 * 109.46476 * 180.80631 * 17 16 14 40 40 H 1.09001 * 109.46217 * 60.83216 * 17 16 14 41 41 H 1.08992 * 109.47507 * 165.78484 * 19 18 17 42 42 H 1.08997 * 109.47512 * 285.79235 * 19 18 17 43 43 H 1.08005 * 120.00257 * 0.02562 * 21 20 19 44 44 H 1.08004 * 120.00110 * 180.22798 * 22 21 20 45 45 H 1.08000 * 120.00297 * 179.82714 * 23 22 21 46 46 H 1.08003 * 120.00145 * 179.97438 * 24 23 22 47 47 H 1.07998 * 120.00016 * 359.97438 * 25 20 19 48 48 H 1.09002 * 109.46208 * 58.27471 * 26 18 17 49 49 H 1.09001 * 109.45796 * 178.23707 * 26 18 17 50 50 H 1.08994 * 109.47104 * 60.00164 * 29 27 26 51 51 H 1.08998 * 109.46901 * 180.02562 * 29 27 26 52 52 H 1.08997 * 109.47222 * 299.99913 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5964 1.9848 -0.8351 5 6 3.5405 1.4449 -0.1398 6 1 4.1539 1.8865 0.6316 7 6 4.1301 0.8831 -1.2524 8 7 3.3829 0.3457 -2.1918 9 14 5.9900 0.8854 -1.4252 10 1 6.5965 1.5451 -0.2411 11 1 6.4803 -0.5133 -1.5172 12 1 6.3720 1.6256 -2.6546 13 7 1.6646 2.0946 1.2618 14 6 1.5898 3.5526 1.0988 15 1 2.3308 3.8770 0.3683 16 6 0.1901 3.9423 0.6156 17 6 0.0993 5.4661 0.5063 18 7 0.3695 6.0691 1.8177 19 6 0.1555 7.5221 1.7831 20 6 -1.1424 7.8221 1.0784 21 6 -1.1554 8.0260 -0.2888 22 6 -2.3465 8.2972 -0.9358 23 6 -3.5233 8.3727 -0.2145 24 6 -3.5094 8.1740 1.1534 25 6 -2.3190 7.8989 1.7999 26 6 1.7254 5.7477 2.2807 27 6 1.8647 4.2324 2.4430 28 1 2.8761 3.9931 2.7718 29 6 0.8579 3.7354 3.4823 30 1 -0.3634 0.6013 -0.8334 31 1 -0.3633 -1.0224 -0.1040 32 1 -0.3634 0.4211 0.9374 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.7978 -0.0492 -2.9747 36 1 0.7948 1.7251 1.6150 37 1 0.0049 3.4957 -0.3613 38 1 -0.5536 3.5830 1.3270 39 1 -0.9006 5.7476 0.1761 40 1 0.8339 5.8228 -0.2158 41 1 0.1132 7.9075 2.8018 42 1 0.9776 7.9978 1.2485 43 1 -0.2355 7.9699 -0.8520 44 1 -2.3573 8.4529 -2.0045 45 1 -4.4535 8.5874 -0.7196 46 1 -4.4288 8.2334 1.7171 47 1 -2.3082 7.7435 2.8686 48 1 2.4524 6.1032 1.5504 49 1 1.9066 6.2339 3.2393 50 1 -0.1530 3.9737 3.1518 51 1 0.9578 2.6561 3.5978 52 1 1.0519 4.2222 4.4380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398038981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:17 Heat of formation + Delta-G solvation = 5.422574 kcal Electronic energy + Delta-G solvation = -27592.099415 eV Core-core repulsion = 24168.966592 eV Total energy + Delta-G solvation = -3423.132823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.04330 -39.80651 -37.77938 -35.55888 -33.90187 -32.67671 -32.27137 -31.72170 -30.77535 -28.40113 -27.47062 -26.36766 -24.71421 -23.84995 -23.36917 -23.06943 -21.67168 -21.41633 -19.52443 -18.29551 -17.69185 -17.26908 -16.83540 -16.30082 -16.29203 -15.82327 -15.79335 -15.39097 -15.24436 -15.04840 -14.55040 -14.39863 -14.18062 -14.09044 -13.70217 -13.56097 -13.52382 -13.33067 -13.08802 -12.92032 -12.78614 -12.63099 -12.49896 -12.39527 -12.29221 -11.97053 -11.87188 -11.85134 -11.74353 -11.56280 -11.50354 -11.31491 -10.98400 -10.82842 -10.42703 -9.77374 -9.70397 -9.17724 -8.86022 -8.05873 -6.17516 0.43465 0.53754 1.37738 1.40108 1.51726 2.43239 2.75708 3.18475 3.19449 3.63416 3.76385 3.89594 3.97443 4.02688 4.18414 4.26154 4.29489 4.30935 4.41512 4.44878 4.50109 4.57151 4.59127 4.65050 4.69118 4.71359 4.72474 4.74795 4.84133 4.89598 4.93569 4.99554 5.09420 5.13893 5.16295 5.19605 5.24031 5.28172 5.39247 5.42278 5.48458 5.58683 5.64418 5.65545 5.68873 5.73739 5.78276 5.92700 6.11066 6.12174 6.18654 6.39874 6.58465 6.97911 7.08213 7.51701 8.96910 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003237 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.648989 B = 8649.062727 C = 8701.467121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.229 3.771 4 H -0.035 1.035 5 C -0.507 4.507 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.103 3.897 15 H 0.034 0.966 16 C -0.133 4.133 17 C 0.070 3.930 18 N -0.521 5.521 19 C 0.094 3.906 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.108 4.108 26 C 0.066 3.934 27 C -0.070 4.070 28 H 0.061 0.939 29 C -0.121 4.121 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.327 0.673 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.100 0.900 42 H 0.039 0.961 43 H 0.113 0.887 44 H 0.132 0.868 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.135 0.865 48 H 0.021 0.979 49 H 0.096 0.904 50 H 0.061 0.939 51 H 0.044 0.956 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.979 16.225 8.266 22.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.160 4.160 3 C 0.121 3.879 4 H -0.017 1.017 5 C -0.546 4.546 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.308 5.308 14 C -0.008 4.008 15 H 0.053 0.947 16 C -0.172 4.172 17 C -0.059 4.059 18 N -0.246 5.246 19 C -0.033 4.033 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.063 4.063 27 C -0.090 4.090 28 H 0.079 0.921 29 C -0.179 4.179 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.118 0.882 42 H 0.057 0.943 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.158 0.842 46 H 0.160 0.840 47 H 0.152 0.848 48 H 0.039 0.961 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.612 15.923 8.687 22.092 hybrid contribution 1.092 0.065 -1.961 2.246 sum -11.520 15.988 6.726 20.822 Atomic orbital electron populations 1.21729 0.96355 1.00972 1.00371 1.21588 0.94146 0.99201 1.01039 1.18872 0.93639 0.90402 0.84980 1.01707 1.21515 0.93044 1.36120 1.03910 0.93506 1.25663 1.02065 0.95509 0.95691 1.70017 1.35990 1.40167 1.09850 0.85590 0.81135 0.77697 0.77703 1.19586 1.20553 1.20887 1.60676 1.36475 1.03124 1.30484 1.21417 0.94460 0.88674 0.96218 0.94718 1.22204 0.98669 0.96034 1.00289 1.21963 1.00479 0.93711 0.89703 1.62093 1.26454 1.09857 1.26179 1.21137 0.93397 0.87654 1.01116 1.19839 0.95582 0.99936 0.93724 1.21222 0.98626 1.00478 0.94416 1.21363 0.92725 1.00227 1.00706 1.21456 0.98638 0.99793 0.94674 1.21465 0.98615 0.99408 0.94979 1.21238 0.91865 0.98770 1.00737 1.22131 0.87927 0.95764 1.00432 1.21068 0.99722 0.93223 0.94974 0.92058 1.21557 0.98882 1.00069 0.97364 0.94712 0.92518 0.92424 0.91599 0.94568 0.93207 0.85374 0.94252 0.90466 0.90154 0.96692 0.88213 0.94303 0.86871 0.85011 0.84244 0.84035 0.84757 0.96112 0.88566 0.91991 0.93652 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.64 71.98 0.69 -4.56 16 2 C -0.12 -5.82 5.36 30.60 0.16 -5.65 16 3 C 0.23 11.66 1.84 44.17 0.08 11.74 16 4 H -0.03 -1.97 7.30 -2.39 -0.02 -1.99 16 5 C -0.51 -28.79 8.50 25.60 0.22 -28.57 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 7 C 0.01 0.48 5.29 84.66 0.45 0.93 16 8 N -0.92 -53.80 11.29 21.45 0.24 -53.56 16 9 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 N -0.68 -28.60 5.46 -472.89 -2.58 -31.18 16 14 C 0.10 3.89 2.03 44.99 0.09 3.98 16 15 H 0.03 1.58 7.62 -2.39 -0.02 1.56 16 16 C -0.13 -4.41 4.99 30.65 0.15 -4.26 16 17 C 0.07 2.01 4.58 86.33 0.40 2.40 16 18 N -0.52 -12.75 4.08 -900.91 -3.68 -16.43 16 19 C 0.09 1.90 5.43 85.56 0.46 2.37 16 20 C -0.09 -1.86 4.11 -19.86 -0.08 -1.94 16 21 C -0.13 -2.72 7.82 22.27 0.17 -2.54 16 22 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 23 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 24 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 25 C -0.11 -1.97 9.70 22.27 0.22 -1.75 16 26 C 0.07 1.69 4.86 86.32 0.42 2.11 16 27 C -0.07 -2.17 2.94 -10.74 -0.03 -2.20 16 28 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 29 C -0.12 -3.26 8.45 71.98 0.61 -2.66 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.94 6.66 -2.39 -0.02 1.92 16 33 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 36 H 0.33 12.57 5.63 -89.70 -0.51 12.07 16 37 H 0.04 1.48 7.62 -2.39 -0.02 1.46 16 38 H 0.08 2.41 6.53 -2.38 -0.02 2.39 16 39 H 0.08 2.24 5.65 -2.39 -0.01 2.22 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.10 1.68 8.08 -2.39 -0.02 1.66 16 42 H 0.04 0.81 8.02 -2.39 -0.02 0.79 16 43 H 0.11 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 48 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.10 2.03 8.12 -2.39 -0.02 2.01 16 50 H 0.06 1.65 6.01 -2.39 -0.01 1.63 16 51 H 0.04 1.32 7.23 -2.39 -0.02 1.30 16 52 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -62.23 391.19 1.06 -61.17 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.37 Total: 29.49 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.68 Total: -36.61 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -6.02 Total: -101.17 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -62.23 1.06 -61.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398038981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.592 kcal (2) G-P(sol) polarization free energy of solvation -62.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds