Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.49234 * 2 1 4 4 C 1.53059 * 109.48625 * 239.95628 * 2 1 3 5 5 N 1.46952 * 109.36526 * 298.43628 * 4 2 1 6 6 C 1.46896 * 111.00169 * 176.81340 * 5 4 2 7 7 C 1.52996 * 109.47256 * 66.04298 * 6 5 4 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.46956 * 110.88340 * 300.67814 * 5 4 2 17 17 H 1.09006 * 109.49107 * 299.35721 * 16 5 4 18 18 C 1.52995 * 109.49250 * 179.28672 * 16 5 4 19 19 C 1.53059 * 109.36150 * 59.31963 * 16 5 4 20 20 H 1.09000 * 109.50431 * 61.58303 * 19 16 5 21 21 C 1.53002 * 109.48734 * 181.63161 * 19 16 5 22 22 N 1.46952 * 109.36526 * 301.60109 * 19 16 5 23 23 C 1.46901 * 110.99953 * 183.19163 * 22 19 16 24 24 C 1.50696 * 109.47086 * 170.15415 * 23 22 19 25 25 C 1.38228 * 120.00070 * 269.72158 * 24 23 22 26 26 C 1.38236 * 120.00130 * 179.74407 * 25 24 23 27 27 C 1.38234 * 119.99783 * 0.53270 * 26 25 24 28 28 C 1.38230 * 120.00057 * 359.74450 * 27 26 25 29 29 C 1.38234 * 119.99999 * 89.99835 * 24 23 22 30 30 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47005 * 300.04237 * 1 2 3 32 32 H 1.09001 * 109.47404 * 60.04166 * 1 2 3 33 33 H 1.09005 * 109.48599 * 178.47167 * 4 2 1 34 34 H 1.08997 * 109.50444 * 58.41380 * 4 2 1 35 35 H 1.09004 * 109.46774 * 306.04497 * 6 5 4 36 36 H 1.09000 * 109.47723 * 186.04886 * 6 5 4 37 37 H 1.09004 * 109.47066 * 60.00378 * 7 6 5 38 38 H 1.08994 * 109.47405 * 300.00209 * 7 6 5 39 39 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46894 * 60.00270 * 18 16 5 41 41 H 1.08999 * 109.47387 * 180.02562 * 18 16 5 42 42 H 1.08999 * 109.47257 * 300.00437 * 18 16 5 43 43 H 1.08998 * 109.47001 * 179.89035 * 21 19 16 44 44 H 1.09001 * 109.47244 * 299.89570 * 21 19 16 45 45 H 1.09006 * 109.47058 * 59.89058 * 21 19 16 46 46 H 1.09002 * 109.46626 * 290.15404 * 23 22 19 47 47 H 1.08996 * 109.47259 * 50.15126 * 23 22 19 48 48 H 1.08004 * 120.00111 * 0.02562 * 25 24 23 49 49 H 1.07998 * 120.00285 * 180.29692 * 26 25 24 50 50 H 1.08001 * 119.99836 * 179.76602 * 27 26 25 51 51 H 1.08002 * 120.00436 * 179.97438 * 28 27 26 52 52 H 1.07999 * 120.00430 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0274 0.0000 4 6 2.0405 -0.7224 -1.2491 5 7 1.5807 -2.1180 -1.2270 6 6 1.9875 -2.8257 -2.4482 7 6 3.5124 -2.9454 -2.4844 8 6 3.9297 -3.6709 -3.7376 9 1 3.1822 -4.0121 -4.4385 10 6 5.2664 -3.8936 -3.9926 11 7 6.1767 -3.4777 -3.1394 12 14 5.7841 -4.7861 -5.5497 13 1 4.5782 -5.1472 -6.3375 14 1 6.6577 -3.9004 -6.3607 15 1 6.5280 -6.0197 -5.1892 16 6 2.0710 -2.8121 -0.0281 17 1 3.1610 -2.8122 -0.0280 18 6 1.5600 -4.2542 -0.0283 19 6 1.5604 -2.0897 1.2210 20 1 0.4708 -2.1135 1.2353 21 6 2.1025 -2.7861 2.4708 22 7 2.0202 -0.6942 1.1989 23 6 1.6135 0.0135 2.4203 24 6 2.2997 1.3540 2.4763 25 6 3.5281 1.4762 3.0983 26 6 4.1600 2.7047 3.1450 27 6 3.5584 3.8133 2.5794 28 6 2.3274 3.6923 1.9624 29 6 1.6981 2.4626 1.9106 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5145 0.8896 32 1 -0.3634 0.5132 -0.8903 33 1 3.1302 -0.6987 -1.2629 34 1 1.6546 -0.2264 -2.1396 35 1 1.6459 -2.2696 -3.3213 36 1 1.5446 -3.8216 -2.4558 37 1 3.8540 -3.5015 -1.6114 38 1 3.9553 -1.9495 -2.4770 39 1 7.1170 -3.6347 -3.3186 40 1 1.9222 -4.7678 -0.9189 41 1 1.9234 -4.7687 0.8612 42 1 0.4700 -4.2535 -0.0274 43 1 1.7403 -2.2703 3.3601 44 1 1.7613 -3.8212 2.4869 45 1 3.1922 -2.7630 2.4558 46 1 0.5331 0.1583 2.4135 47 1 1.8956 -0.5758 3.2927 48 1 3.9963 0.6108 3.5438 49 1 5.1220 2.7992 3.6267 50 1 4.0504 4.7739 2.6192 51 1 1.8571 4.5585 1.5208 52 1 0.7365 2.3680 1.4282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404440400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = 35.047817 kcal Electronic energy + Delta-G solvation = -28042.700991 eV Core-core repulsion = 24620.852815 eV Total energy + Delta-G solvation = -3421.848176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.30230 -38.92564 -36.17686 -33.78288 -33.00579 -31.92349 -30.91203 -29.77639 -28.50872 -28.06393 -26.20743 -25.23104 -24.33581 -22.60992 -22.44663 -21.40859 -20.98503 -19.71342 -18.05645 -16.79025 -16.40302 -16.05145 -15.71488 -15.34942 -14.93151 -14.83958 -14.47583 -14.21786 -13.90366 -13.46602 -13.27759 -13.20806 -12.96888 -12.69488 -12.51248 -12.43999 -12.24574 -11.95449 -11.81840 -11.49534 -11.43398 -11.38032 -11.24498 -11.07547 -10.96467 -10.90181 -10.88788 -10.62648 -10.48726 -10.10747 -9.94589 -9.82629 -9.56475 -9.06770 -8.91198 -8.77082 -8.32429 -8.04912 -7.38959 -5.98603 -4.01403 1.31877 1.39426 3.31007 3.38723 3.42704 3.66849 4.20048 4.44863 4.57663 4.73966 4.81565 4.97203 5.02104 5.08100 5.15860 5.23510 5.36562 5.37980 5.43112 5.47702 5.54031 5.59227 5.62518 5.65423 5.79259 5.82390 5.88770 5.92001 5.97439 6.03006 6.07869 6.12081 6.14048 6.28557 6.33174 6.40009 6.43231 6.45312 6.48656 6.53675 6.62705 6.62964 6.69731 6.80707 6.97937 6.99600 7.24631 7.31217 7.63057 7.64644 7.75848 7.92155 8.04114 8.45616 9.06285 9.62619 11.12218 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.003542 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.783828 B = 7902.989854 C = 8636.428217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.083 0.917 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.007 4.007 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.088 3.912 17 H 0.061 0.939 18 C -0.145 4.145 19 C 0.089 3.911 20 H 0.048 0.952 21 C -0.150 4.150 22 N -0.520 5.520 23 C 0.084 3.916 24 C -0.070 4.070 25 C -0.099 4.099 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.115 4.115 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.118 0.882 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 10.276 14.512 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.026 4.026 3 H 0.101 0.899 4 C -0.068 4.068 5 N -0.260 5.260 6 C -0.072 4.072 7 C -0.045 4.045 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.717 3.283 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.021 4.021 17 H 0.079 0.921 18 C -0.203 4.203 19 C -0.020 4.020 20 H 0.066 0.934 21 C -0.208 4.208 22 N -0.244 5.244 23 C -0.043 4.043 24 C -0.070 4.070 25 C -0.117 4.117 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.141 4.141 29 C -0.134 4.134 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.103 0.897 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.136 0.864 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.091 10.259 14.532 20.451 hybrid contribution 0.573 -0.362 -0.999 1.207 sum -9.518 9.896 13.533 19.279 Atomic orbital electron populations 1.22335 0.97442 1.02990 1.00717 1.21809 0.92973 0.97853 0.89972 0.89923 1.22074 0.99237 0.89548 0.95901 1.62556 1.58842 1.01664 1.02895 1.22330 0.97891 0.97404 0.89543 1.19638 0.90323 0.97213 0.97355 1.21206 0.91850 1.36589 1.06064 0.92695 1.25015 0.96858 0.95856 0.96597 1.69986 1.00695 1.46767 1.35789 0.86580 0.78612 0.79498 0.83578 1.19732 1.21077 1.21055 1.21569 0.98852 0.92928 0.88773 0.92147 1.21896 1.00757 0.95368 1.02269 1.21708 0.97501 0.87377 0.95381 0.93410 1.21995 1.02348 1.00131 0.96315 1.62360 1.59436 1.01609 1.01029 1.21170 0.96999 0.91782 0.94394 1.19774 0.95228 0.94560 0.97473 1.21034 0.94423 0.97329 0.98943 1.21143 0.99770 0.92980 1.00071 1.21110 0.95758 0.98600 0.98835 1.21089 0.95745 0.97397 0.99862 1.21087 1.00143 0.92576 0.99559 0.90975 0.93752 0.92469 0.93168 0.91053 0.92374 0.91681 0.96173 0.96601 0.93132 0.91248 0.92676 0.92854 0.92862 0.91785 0.91675 0.93825 0.89651 0.86061 0.86269 0.86448 0.86373 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 8.29 37.16 0.31 -1.91 16 2 C 0.08 1.18 2.61 -67.65 -0.18 1.01 16 3 H 0.08 1.19 5.95 -51.93 -0.31 0.88 16 4 C 0.06 1.06 4.70 -3.77 -0.02 1.05 16 5 N -0.54 -9.58 4.05 -226.49 -0.92 -10.50 16 6 C 0.06 1.15 4.77 -3.83 -0.02 1.13 16 7 C -0.01 -0.18 4.26 -27.88 -0.12 -0.30 16 8 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.09 1.49 1.51 -67.65 -0.10 1.39 16 17 H 0.06 1.26 6.45 -51.93 -0.33 0.92 16 18 C -0.15 -2.28 8.54 37.15 0.32 -1.96 16 19 C 0.09 1.24 1.69 -67.65 -0.11 1.13 16 20 H 0.05 0.67 6.34 -51.93 -0.33 0.34 16 21 C -0.15 -1.82 8.58 37.16 0.32 -1.50 16 22 N -0.52 -7.32 4.47 -220.00 -0.98 -8.31 16 23 C 0.08 0.98 4.69 -4.98 -0.02 0.96 16 24 C -0.07 -0.83 4.89 -104.63 -0.51 -1.34 16 25 C -0.10 -1.16 9.70 -39.59 -0.38 -1.54 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 28 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 29 C -0.12 -1.29 7.92 -39.58 -0.31 -1.60 16 30 H 0.07 1.00 5.94 -51.93 -0.31 0.70 16 31 H 0.04 0.49 5.70 -51.93 -0.30 0.20 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 1.04 6.63 -51.93 -0.34 0.70 16 34 H 0.07 1.21 8.11 -51.93 -0.42 0.78 16 35 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.06 1.34 6.38 -51.93 -0.33 1.01 16 37 H 0.02 0.55 6.44 -51.93 -0.33 0.22 16 38 H 0.02 0.44 6.62 -51.93 -0.34 0.10 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.24 6.40 -51.93 -0.33 0.91 16 41 H 0.05 0.76 6.48 -51.93 -0.34 0.43 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.55 6.15 -51.93 -0.32 0.23 16 44 H 0.06 0.72 6.48 -51.93 -0.34 0.38 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.49 6.05 -51.93 -0.31 0.17 16 47 H 0.09 0.93 5.68 -51.93 -0.29 0.63 16 48 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 51 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 52 H 0.12 1.20 7.25 -52.49 -0.38 0.82 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -30.12 379.38 -11.50 -41.62 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.59 Total: 2.96 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -2.44 Total: -21.94 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -1.16 Total: -45.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.12 -11.50 -41.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404440400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.668 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds