Wall clock time and date at job start Tue Mar 31 2020 11:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.49234 * 2 1 4 4 C 1.53059 * 109.48625 * 239.95628 * 2 1 3 5 5 N 1.46952 * 109.36526 * 298.43628 * 4 2 1 6 6 C 1.46896 * 111.00169 * 176.81340 * 5 4 2 7 7 C 1.52996 * 109.47256 * 66.04298 * 6 5 4 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72211 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 C 1.46956 * 110.88340 * 300.67814 * 5 4 2 17 17 H 1.09006 * 109.49107 * 299.35721 * 16 5 4 18 18 C 1.52995 * 109.49250 * 179.28672 * 16 5 4 19 19 C 1.53059 * 109.36150 * 59.31963 * 16 5 4 20 20 H 1.09000 * 109.50431 * 61.58303 * 19 16 5 21 21 C 1.53002 * 109.48734 * 181.63161 * 19 16 5 22 22 N 1.46952 * 109.36526 * 301.60109 * 19 16 5 23 23 C 1.46901 * 110.99953 * 183.19163 * 22 19 16 24 24 C 1.50696 * 109.47086 * 170.15415 * 23 22 19 25 25 C 1.38228 * 120.00070 * 269.72158 * 24 23 22 26 26 C 1.38236 * 120.00130 * 179.74407 * 25 24 23 27 27 C 1.38234 * 119.99783 * 0.53270 * 26 25 24 28 28 C 1.38230 * 120.00057 * 359.74450 * 27 26 25 29 29 C 1.38234 * 119.99999 * 89.99835 * 24 23 22 30 30 H 1.08997 * 109.47694 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47005 * 300.04237 * 1 2 3 32 32 H 1.09001 * 109.47404 * 60.04166 * 1 2 3 33 33 H 1.09005 * 109.48599 * 178.47167 * 4 2 1 34 34 H 1.08997 * 109.50444 * 58.41380 * 4 2 1 35 35 H 1.09004 * 109.46774 * 306.04497 * 6 5 4 36 36 H 1.09000 * 109.47723 * 186.04886 * 6 5 4 37 37 H 1.09004 * 109.47066 * 60.00378 * 7 6 5 38 38 H 1.08994 * 109.47405 * 300.00209 * 7 6 5 39 39 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46894 * 60.00270 * 18 16 5 41 41 H 1.08999 * 109.47387 * 180.02562 * 18 16 5 42 42 H 1.08999 * 109.47257 * 300.00437 * 18 16 5 43 43 H 1.08998 * 109.47001 * 179.89035 * 21 19 16 44 44 H 1.09001 * 109.47244 * 299.89570 * 21 19 16 45 45 H 1.09006 * 109.47058 * 59.89058 * 21 19 16 46 46 H 1.09002 * 109.46626 * 290.15404 * 23 22 19 47 47 H 1.08996 * 109.47259 * 50.15126 * 23 22 19 48 48 H 1.08004 * 120.00111 * 0.02562 * 25 24 23 49 49 H 1.07998 * 120.00285 * 180.29692 * 26 25 24 50 50 H 1.08001 * 119.99836 * 179.76602 * 27 26 25 51 51 H 1.08002 * 120.00436 * 179.97438 * 28 27 26 52 52 H 1.07999 * 120.00430 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0274 0.0000 4 6 2.0405 -0.7224 -1.2491 5 7 1.5807 -2.1180 -1.2270 6 6 1.9875 -2.8257 -2.4482 7 6 3.5124 -2.9454 -2.4844 8 6 3.9297 -3.6709 -3.7376 9 1 3.1822 -4.0121 -4.4385 10 6 5.2664 -3.8936 -3.9926 11 7 6.1767 -3.4777 -3.1394 12 14 5.7841 -4.7861 -5.5497 13 1 4.5782 -5.1472 -6.3375 14 1 6.6577 -3.9004 -6.3607 15 1 6.5280 -6.0197 -5.1892 16 6 2.0710 -2.8121 -0.0281 17 1 3.1610 -2.8122 -0.0280 18 6 1.5600 -4.2542 -0.0283 19 6 1.5604 -2.0897 1.2210 20 1 0.4708 -2.1135 1.2353 21 6 2.1025 -2.7861 2.4708 22 7 2.0202 -0.6942 1.1989 23 6 1.6135 0.0135 2.4203 24 6 2.2997 1.3540 2.4763 25 6 3.5281 1.4762 3.0983 26 6 4.1600 2.7047 3.1450 27 6 3.5584 3.8133 2.5794 28 6 2.3274 3.6923 1.9624 29 6 1.6981 2.4626 1.9106 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5145 0.8896 32 1 -0.3634 0.5132 -0.8903 33 1 3.1302 -0.6987 -1.2629 34 1 1.6546 -0.2264 -2.1396 35 1 1.6459 -2.2696 -3.3213 36 1 1.5446 -3.8216 -2.4558 37 1 3.8540 -3.5015 -1.6114 38 1 3.9553 -1.9495 -2.4770 39 1 7.1170 -3.6347 -3.3186 40 1 1.9222 -4.7678 -0.9189 41 1 1.9234 -4.7687 0.8612 42 1 0.4700 -4.2535 -0.0274 43 1 1.7403 -2.2703 3.3601 44 1 1.7613 -3.8212 2.4869 45 1 3.1922 -2.7630 2.4558 46 1 0.5331 0.1583 2.4135 47 1 1.8956 -0.5758 3.2927 48 1 3.9963 0.6108 3.5438 49 1 5.1220 2.7992 3.6267 50 1 4.0504 4.7739 2.6192 51 1 1.8571 4.5585 1.5208 52 1 0.7365 2.3680 1.4282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404440400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:22 Heat of formation + Delta-G solvation = 17.757593 kcal Electronic energy + Delta-G solvation = -28043.450751 eV Core-core repulsion = 24620.852815 eV Total energy + Delta-G solvation = -3422.597936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47684 -39.89812 -37.55460 -35.16724 -34.86511 -33.10998 -31.73456 -31.31807 -29.97360 -29.18727 -27.55690 -26.42955 -25.98032 -24.10484 -23.44513 -22.52138 -22.25327 -21.04619 -19.44603 -18.51895 -17.66167 -17.20075 -16.94397 -16.58094 -16.28345 -16.17134 -15.80545 -15.56042 -15.12809 -14.74130 -14.62175 -14.42769 -14.20342 -13.96428 -13.72390 -13.51800 -13.41222 -13.27164 -13.22401 -13.07056 -12.82134 -12.78783 -12.55951 -12.43507 -12.42274 -12.29734 -11.99998 -11.88477 -11.78342 -11.69848 -11.48839 -11.29838 -11.27338 -11.04708 -10.55689 -9.74638 -9.63244 -9.17796 -8.98430 -8.21158 -6.33732 0.47942 0.56368 1.37190 1.37392 1.51043 2.38344 2.75545 3.08118 3.11071 3.20639 3.80511 3.83268 3.94624 4.02489 4.13539 4.20508 4.24631 4.31879 4.38746 4.39711 4.46197 4.52482 4.54917 4.58875 4.67652 4.68690 4.72828 4.77844 4.80145 4.82812 4.90006 4.95750 5.02136 5.03894 5.08031 5.13591 5.18026 5.21707 5.24045 5.32667 5.39219 5.51028 5.52116 5.60098 5.62248 5.67504 5.76329 5.77610 6.01570 6.15079 6.18299 6.23680 6.33420 6.39431 6.84805 7.35748 8.89844 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014461 B = 0.003542 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.783828 B = 7902.989854 C = 8636.428217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.091 3.909 3 H 0.083 0.917 4 C 0.062 3.938 5 N -0.519 5.519 6 C 0.069 3.931 7 C 0.009 3.991 8 C -0.539 4.539 9 H 0.061 0.939 10 C 0.001 3.999 11 N -0.933 5.933 12 Si 0.964 3.036 13 H -0.259 1.259 14 H -0.280 1.280 15 H -0.278 1.278 16 C 0.087 3.913 17 H 0.012 0.988 18 C -0.139 4.139 19 C 0.096 3.904 20 H 0.061 0.939 21 C -0.145 4.145 22 N -0.540 5.540 23 C 0.090 3.910 24 C -0.085 4.085 25 C -0.117 4.117 26 C -0.133 4.133 27 C -0.131 4.131 28 C -0.129 4.129 29 C -0.123 4.123 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.005 0.995 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.071 0.929 37 H -0.007 1.007 38 H -0.020 1.020 39 H 0.262 0.738 40 H 0.041 0.959 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.057 0.943 47 H 0.094 0.906 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.139 0.861 51 H 0.139 0.861 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 10.654 14.928 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.017 4.017 3 H 0.101 0.899 4 C -0.067 4.067 5 N -0.242 5.242 6 C -0.058 4.058 7 C -0.029 4.029 8 C -0.578 4.578 9 H 0.079 0.921 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.789 3.211 13 H -0.183 1.183 14 H -0.205 1.205 15 H -0.204 1.204 16 C -0.022 4.022 17 H 0.030 0.970 18 C -0.196 4.196 19 C -0.012 4.012 20 H 0.078 0.922 21 C -0.203 4.203 22 N -0.264 5.264 23 C -0.037 4.037 24 C -0.086 4.086 25 C -0.136 4.136 26 C -0.151 4.151 27 C -0.149 4.149 28 C -0.147 4.147 29 C -0.141 4.141 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.023 0.977 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.011 0.989 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.112 0.888 48 H 0.139 0.861 49 H 0.151 0.849 50 H 0.156 0.844 51 H 0.157 0.843 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.999 10.642 14.961 21.933 hybrid contribution 1.230 -0.415 -1.095 1.698 sum -10.770 10.227 13.866 20.318 Atomic orbital electron populations 1.22218 0.95321 1.02737 1.02090 1.21654 0.94406 0.97133 0.88528 0.89862 1.22098 0.96553 0.89782 0.98277 1.62635 1.57739 1.01711 1.02146 1.22087 0.94249 0.98254 0.91240 1.19428 0.93570 0.94370 0.95564 1.21653 0.92449 1.36774 1.06916 0.92051 1.25983 0.96885 0.96616 1.00221 1.70137 1.01135 1.48073 1.38030 0.85411 0.78515 0.78133 0.79072 1.18324 1.20546 1.20354 1.21623 0.96110 0.94527 0.89916 0.97000 1.21840 1.01865 0.94077 1.01851 1.21623 0.97939 0.87316 0.94302 0.92162 1.21973 1.01095 1.00991 0.96242 1.62293 1.60356 1.01857 1.01934 1.21174 0.97647 0.91614 0.93216 1.19884 0.95554 0.94933 0.98180 1.21206 0.94846 0.97905 0.99598 1.21412 1.00474 0.92942 1.00241 1.21439 0.95871 0.99366 0.98209 1.21414 0.95827 0.97938 0.99537 1.21275 1.00670 0.92690 0.99512 0.91918 0.91622 0.91862 0.97671 0.90726 0.92281 0.91025 0.98897 1.00134 0.92942 0.94009 0.90828 0.90812 0.90442 0.90574 0.93578 0.92535 0.88806 0.86086 0.84863 0.84362 0.84295 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 8.29 71.98 0.60 -3.19 16 2 C 0.09 2.59 2.61 44.92 0.12 2.70 16 3 H 0.08 2.36 5.95 -2.39 -0.01 2.35 16 4 C 0.06 2.24 4.70 86.31 0.41 2.65 16 5 N -0.52 -19.03 4.05 -870.48 -3.53 -22.56 16 6 C 0.07 3.00 4.77 86.30 0.41 3.41 16 7 C 0.01 0.49 4.26 29.85 0.13 0.61 16 8 C -0.54 -31.39 9.11 25.60 0.23 -31.15 16 9 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 10 C 0.00 0.04 5.46 84.66 0.46 0.50 16 11 N -0.93 -58.61 13.29 21.45 0.28 -58.33 16 12 Si 0.96 45.21 29.54 68.60 2.03 47.23 16 13 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 C 0.09 3.06 1.51 44.92 0.07 3.13 16 17 H 0.01 0.54 6.45 -2.38 -0.02 0.52 16 18 C -0.14 -4.32 8.54 71.98 0.61 -3.71 16 19 C 0.10 2.63 1.69 44.93 0.08 2.70 16 20 H 0.06 1.54 6.34 -2.39 -0.02 1.52 16 21 C -0.15 -3.34 8.58 71.98 0.62 -2.72 16 22 N -0.54 -14.99 4.47 -849.94 -3.80 -18.79 16 23 C 0.09 1.96 4.69 85.56 0.40 2.36 16 24 C -0.09 -1.94 4.89 -19.87 -0.10 -2.03 16 25 C -0.12 -2.71 9.70 22.27 0.22 -2.49 16 26 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 27 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 28 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 29 C -0.12 -2.55 7.92 22.27 0.18 -2.37 16 30 H 0.06 1.58 5.94 -2.39 -0.01 1.57 16 31 H 0.06 1.24 5.70 -2.39 -0.01 1.23 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.00 0.22 6.63 -2.38 -0.02 0.21 16 34 H 0.07 2.60 8.11 -2.39 -0.02 2.58 16 35 H 0.06 2.52 8.10 -2.38 -0.02 2.50 16 36 H 0.07 3.00 6.38 -2.39 -0.02 2.99 16 37 H -0.01 -0.43 6.44 -2.38 -0.02 -0.45 16 38 H -0.02 -1.20 6.62 -2.39 -0.02 -1.21 16 39 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 40 H 0.04 1.52 6.40 -2.39 -0.02 1.50 16 41 H 0.07 1.99 6.48 -2.39 -0.02 1.98 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.08 1.41 6.15 -2.39 -0.01 1.40 16 44 H 0.08 1.56 6.48 -2.39 -0.02 1.54 16 45 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 46 H 0.06 1.09 6.05 -2.39 -0.01 1.08 16 47 H 0.09 1.86 5.68 -2.39 -0.01 1.85 16 48 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 49 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 50 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 51 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 52 H 0.13 2.31 7.25 -2.91 -0.02 2.29 16 Total: -1.00 -68.13 379.38 0.98 -67.15 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.89 Total: 21.95 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 5.10 Total: -36.66 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -7.04 Total: -99.68 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.13 0.98 -67.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404440400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.908 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds