Wall clock time and date at job start Tue Mar 31 2020 11:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.48914 * 2 1 4 4 C 1.53053 * 109.48986 * 239.93025 * 2 1 3 5 5 N 1.46966 * 109.37941 * 181.64241 * 4 2 1 6 6 C 1.46898 * 111.01441 * 183.16863 * 5 4 2 7 7 C 1.53005 * 109.47181 * 46.18835 * 6 5 4 8 8 C 1.50701 * 109.47250 * 179.97438 * 7 6 5 9 9 H 1.08008 * 119.99702 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00243 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00241 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99890 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.46982 * 90.00027 * 12 10 8 14 14 H 1.48501 * 109.46767 * 210.00201 * 12 10 8 15 15 H 1.48497 * 109.47198 * 330.00026 * 12 10 8 16 16 C 1.46949 * 110.88002 * 59.28803 * 5 4 2 17 17 H 1.09004 * 109.48983 * 180.73206 * 16 5 4 18 18 C 1.53002 * 109.49020 * 60.68895 * 16 5 4 19 19 C 1.53048 * 109.38582 * 300.71180 * 16 5 4 20 20 H 1.09000 * 109.48628 * 298.42407 * 19 16 5 21 21 C 1.53003 * 109.49093 * 178.35950 * 19 16 5 22 22 N 1.46960 * 109.36597 * 58.39026 * 19 16 5 23 23 C 1.46896 * 110.99947 * 176.81320 * 22 19 16 24 24 C 1.50698 * 109.47342 * 61.13751 * 23 22 19 25 25 C 1.38243 * 119.99901 * 268.93219 * 24 23 22 26 26 C 1.38233 * 119.99707 * 179.74117 * 25 24 23 27 27 C 1.38232 * 120.00319 * 0.55040 * 26 25 24 28 28 C 1.38234 * 119.99775 * 359.70325 * 27 26 25 29 29 C 1.38232 * 120.00262 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47336 * 306.03910 * 1 2 3 31 31 H 1.08995 * 109.47166 * 66.04450 * 1 2 3 32 32 H 1.09000 * 109.46633 * 186.04526 * 1 2 3 33 33 H 1.08996 * 109.49151 * 301.59453 * 4 2 1 34 34 H 1.08999 * 109.48815 * 61.64786 * 4 2 1 35 35 H 1.09001 * 109.46959 * 166.18685 * 6 5 4 36 36 H 1.09000 * 109.47357 * 286.18692 * 6 5 4 37 37 H 1.09001 * 109.47052 * 299.99793 * 7 6 5 38 38 H 1.09000 * 109.47092 * 59.99695 * 7 6 5 39 39 H 0.96996 * 120.00210 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.47144 * 300.04571 * 18 16 5 41 41 H 1.08999 * 109.46722 * 60.04447 * 18 16 5 42 42 H 1.09002 * 109.47382 * 180.02562 * 18 16 5 43 43 H 1.08999 * 109.46953 * 60.00068 * 21 19 16 44 44 H 1.08998 * 109.46983 * 179.97438 * 21 19 16 45 45 H 1.08997 * 109.46578 * 299.99704 * 21 19 16 46 46 H 1.09002 * 109.46846 * 181.13265 * 23 22 19 47 47 H 1.08999 * 109.47229 * 301.13102 * 23 22 19 48 48 H 1.07998 * 119.99472 * 359.97438 * 25 24 23 49 49 H 1.08000 * 119.99272 * 180.26975 * 26 25 24 50 50 H 1.08001 * 119.99948 * 179.72024 * 27 26 25 51 51 H 1.07997 * 119.99859 * 180.02562 * 28 27 26 52 52 H 1.08001 * 120.00215 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0407 -0.7229 -1.2486 5 7 3.5098 -0.7560 -1.2264 6 6 4.0412 -1.3766 -2.4472 7 6 3.3231 -0.7977 -3.6679 8 6 3.8687 -1.4340 -4.9203 9 1 4.6494 -2.1773 -4.8524 10 6 3.3715 -1.0672 -6.1528 11 7 3.8473 -1.6228 -7.2458 12 14 2.0208 0.2179 -6.2703 13 1 2.6301 1.5667 -6.3916 14 1 1.1805 -0.0549 -7.4639 15 1 1.1781 0.1635 -5.0488 16 6 4.0000 -1.4490 -0.0269 17 1 5.0900 -1.4490 -0.0269 18 6 3.4896 -2.8914 -0.0263 19 6 3.4894 -0.7262 1.2217 20 1 3.8756 0.2930 1.2353 21 6 3.9645 -1.4693 2.4719 22 7 2.0203 -0.6935 1.1994 23 6 1.4889 -0.0734 2.4204 24 6 1.9794 1.3483 2.5162 25 6 3.1548 1.6302 3.1871 26 6 3.6075 2.9337 3.2703 27 6 2.8791 3.9566 2.6926 28 6 1.7011 3.6754 2.0262 29 6 1.2512 2.3713 1.9381 30 1 -0.3634 0.6046 0.8309 31 1 -0.3633 0.4172 -0.9391 32 1 -0.3632 -1.0220 0.1082 33 1 1.6545 -1.7421 -1.2623 34 1 1.7020 -0.1937 -2.1393 35 1 5.1092 -1.1724 -2.5233 36 1 3.8792 -2.4538 -2.4074 37 1 2.2551 -1.0019 -3.5919 38 1 3.4851 0.2795 -3.7078 39 1 3.4972 -1.3651 -8.1129 40 1 2.3996 -2.8911 -0.0263 41 1 3.8528 -3.4057 -0.9160 42 1 3.8530 -3.4050 0.8638 43 1 5.0540 -1.4950 2.4872 44 1 3.6010 -0.9540 3.3610 45 1 3.5771 -2.4880 2.4581 46 1 0.3994 -0.0802 2.3868 47 1 1.8291 -0.6346 3.2906 48 1 3.7212 0.8316 3.6428 49 1 4.5281 3.1533 3.7907 50 1 3.2306 4.9755 2.7615 51 1 1.1322 4.4745 1.5745 52 1 0.3306 2.1516 1.4178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404440403.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:27 Heat of formation + Delta-G solvation = 23.985430 kcal Electronic energy + Delta-G solvation = -28370.879671 eV Core-core repulsion = 24948.551794 eV Total energy + Delta-G solvation = -3422.327877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69466 -39.83773 -37.42664 -35.43804 -34.85897 -33.15022 -31.81758 -31.56336 -29.98465 -29.22604 -27.84387 -26.59842 -25.97619 -23.81638 -23.44901 -22.56272 -21.74200 -21.14909 -19.46188 -19.07504 -17.61439 -17.18128 -17.09471 -16.66317 -16.14481 -16.11280 -15.96444 -15.63338 -15.37324 -14.76567 -14.71656 -14.55910 -14.39923 -14.05899 -13.76436 -13.51523 -13.42853 -13.39525 -13.16829 -12.96566 -12.86130 -12.77419 -12.58739 -12.43618 -12.35919 -12.06410 -11.95051 -11.89125 -11.83645 -11.65149 -11.52721 -11.36601 -11.19553 -11.07494 -10.77838 -9.75907 -9.63000 -9.27588 -9.06577 -8.32175 -6.36378 0.45987 0.53202 1.33406 1.34384 1.46605 2.33508 2.81284 3.00152 3.03058 3.06834 3.78121 3.85794 3.95359 3.98412 4.11903 4.15838 4.25637 4.28038 4.32950 4.38620 4.40092 4.44753 4.55079 4.58295 4.61620 4.64449 4.72102 4.76143 4.78875 4.83706 4.86096 4.91215 4.96022 5.02425 5.06761 5.09764 5.15824 5.18202 5.23505 5.28357 5.36666 5.40823 5.44508 5.53398 5.60303 5.60646 5.65738 5.69066 6.05711 6.13103 6.15646 6.22343 6.32486 6.34408 6.70997 7.28237 8.84667 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.003944 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.992870 B = 7097.372753 C = 7895.839763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.040 0.960 4 C 0.057 3.943 5 N -0.544 5.544 6 C 0.081 3.919 7 C -0.002 4.002 8 C -0.533 4.533 9 H 0.032 0.968 10 C 0.009 3.991 11 N -0.949 5.949 12 Si 0.949 3.051 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.248 1.248 16 C 0.082 3.918 17 H 0.076 0.924 18 C -0.169 4.169 19 C 0.095 3.905 20 H 0.039 0.961 21 C -0.145 4.145 22 N -0.513 5.513 23 C 0.087 3.913 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.124 4.124 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.022 0.978 38 H 0.015 0.985 39 H 0.267 0.733 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.134 0.866 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.131 0.869 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 7.239 27.161 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 H 0.058 0.942 4 C -0.071 4.071 5 N -0.267 5.267 6 C -0.047 4.047 7 C -0.039 4.039 8 C -0.571 4.571 9 H 0.050 0.950 10 C -0.188 4.188 11 N -0.590 5.590 12 Si 0.772 3.228 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.171 1.171 16 C -0.026 4.026 17 H 0.094 0.906 18 C -0.228 4.228 19 C -0.014 4.014 20 H 0.056 0.944 21 C -0.202 4.202 22 N -0.236 5.236 23 C -0.040 4.040 24 C -0.126 4.126 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.152 4.152 29 C -0.142 4.142 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.152 0.848 49 H 0.154 0.846 50 H 0.152 0.848 51 H 0.149 0.851 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.384 7.196 26.959 28.624 hybrid contribution -0.007 0.400 -1.160 1.227 sum -6.391 7.595 25.799 27.643 Atomic orbital electron populations 1.21907 0.92809 1.02996 1.02427 1.21584 0.95927 0.95513 0.89000 0.94204 1.22261 0.87746 0.99318 0.97814 1.62445 1.08692 1.53386 1.02198 1.21834 0.98461 0.95790 0.88594 1.19534 0.95986 0.95891 0.92516 1.21392 1.20947 1.23181 0.91583 0.94999 1.25942 0.99245 0.98508 0.95100 1.70059 1.44990 1.45252 0.98686 0.85676 0.79433 0.79162 0.78498 1.19344 1.20622 1.17125 1.21824 0.98961 0.92388 0.89445 0.90559 1.22282 1.02229 0.96808 1.01448 1.21567 0.87438 0.97844 0.94560 0.94354 1.21999 1.01424 1.01151 0.95635 1.62620 1.08154 1.51368 1.01468 1.21429 1.00906 0.88274 0.93386 1.20765 0.96134 0.97292 0.98383 1.21387 0.96091 0.97210 0.99115 1.21432 1.00392 0.93073 1.00090 1.21425 0.95343 1.00124 0.98104 1.21411 0.97214 0.97087 0.99535 1.21376 1.00441 0.92933 0.99488 0.90538 0.92219 0.91529 0.94591 0.91759 0.92625 0.95550 0.95944 0.96706 0.92395 0.91921 0.94759 0.90233 0.91429 0.90795 0.91132 0.88819 0.88257 0.84835 0.84646 0.84804 0.85105 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.38 71.98 0.60 -2.36 16 2 C 0.09 2.27 1.97 44.92 0.09 2.36 16 3 H 0.04 1.16 6.28 -2.39 -0.02 1.14 16 4 C 0.06 1.87 3.83 86.31 0.33 2.20 16 5 N -0.54 -19.19 4.81 -870.47 -4.19 -23.38 16 6 C 0.08 3.43 5.07 86.31 0.44 3.86 16 7 C 0.00 -0.08 3.30 29.85 0.10 0.02 16 8 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 9 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 10 C 0.01 0.55 5.47 84.65 0.46 1.01 16 11 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 12 Si 0.95 45.46 27.47 68.60 1.88 47.34 16 13 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 16 C 0.08 2.35 2.52 44.92 0.11 2.46 16 17 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 18 C -0.17 -4.60 8.00 71.98 0.58 -4.02 16 19 C 0.09 2.16 1.66 44.92 0.07 2.24 16 20 H 0.04 1.02 6.35 -2.39 -0.02 1.00 16 21 C -0.14 -2.37 8.09 71.98 0.58 -1.79 16 22 N -0.51 -11.18 3.87 -849.91 -3.29 -14.47 16 23 C 0.09 1.49 4.85 85.56 0.42 1.90 16 24 C -0.12 -2.34 4.02 -19.86 -0.08 -2.42 16 25 C -0.12 -2.15 7.94 22.27 0.18 -1.97 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 27 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 28 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 29 C -0.12 -2.42 7.87 22.27 0.18 -2.24 16 30 H 0.08 1.26 4.55 -2.39 -0.01 1.25 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.04 1.23 6.35 -2.39 -0.02 1.21 16 34 H 0.06 2.37 6.00 -2.39 -0.01 2.36 16 35 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.03 1.15 5.96 -2.39 -0.01 1.13 16 37 H 0.02 1.09 5.32 -2.39 -0.01 1.07 16 38 H 0.01 0.73 7.57 -2.39 -0.02 0.71 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.06 1.79 5.94 -2.39 -0.01 1.77 16 41 H 0.03 1.06 6.28 -2.39 -0.01 1.05 16 42 H 0.08 1.75 6.40 -2.39 -0.02 1.74 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.98 4.34 -2.39 -0.01 0.97 16 45 H 0.07 1.16 6.40 -2.39 -0.02 1.14 16 46 H 0.09 1.45 6.19 -2.39 -0.01 1.43 16 47 H 0.10 1.42 6.12 -2.39 -0.01 1.41 16 48 H 0.13 1.98 5.79 -2.91 -0.02 1.96 16 49 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 50 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 51 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 52 H 0.13 2.24 5.70 -2.91 -0.02 2.22 16 Total: -1.00 -68.07 366.34 0.54 -67.53 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.85 Total: 20.11 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 4.97 Total: -36.83 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -7.17 Total: -98.16 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.88 Total: 47.34 kcal Total: -68.07 0.54 -67.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404440403.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.519 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds