Wall clock time and date at job start Tue Mar 31 2020 11:41:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.47692 * 2 1
4 4 C 1.53003 * 109.46775 * 240.00094 * 2 1 3
5 5 C 1.50708 * 109.47114 * 175.00233 * 4 2 1
6 6 H 1.07996 * 119.99756 * 359.97438 * 5 4 2
7 7 C 1.37879 * 120.00021 * 179.97438 * 5 4 2
8 8 N 1.31515 * 119.99641 * 0.02562 * 7 5 4
9 9 Si 1.86791 * 119.99910 * 179.97438 * 7 5 4
10 10 H 1.48499 * 109.47420 * 90.00184 * 9 7 5
11 11 H 1.48501 * 109.47380 * 210.00530 * 9 7 5
12 12 H 1.48508 * 109.47325 * 330.00174 * 9 7 5
13 13 N 1.46897 * 109.47071 * 120.00222 * 2 1 3
14 14 C 1.46956 * 111.00174 * 58.95140 * 13 2 1
15 15 C 1.53056 * 109.38342 * 176.80239 * 14 13 2
16 16 N 1.46992 * 109.33916 * 58.38486 * 15 14 13
17 17 C 1.46902 * 110.99349 * 176.82325 * 16 15 14
18 18 C 1.50703 * 109.46956 * 293.81281 * 17 16 15
19 19 C 1.38232 * 120.00368 * 269.72564 * 18 17 16
20 20 C 1.38237 * 120.00350 * 179.76817 * 19 18 17
21 21 C 1.38236 * 119.99548 * 0.50759 * 20 19 18
22 22 C 1.38238 * 120.00211 * 359.74057 * 21 20 19
23 23 C 1.38234 * 120.00068 * 0.02562 * 22 21 20
24 24 C 1.46956 * 110.89694 * 300.69699 * 16 15 14
25 25 C 1.52997 * 109.48604 * 299.34946 * 24 16 15
26 26 C 1.53005 * 109.48866 * 179.28799 * 24 16 15
27 27 C 1.46954 * 111.00197 * 295.14841 * 13 2 1
28 28 H 1.08993 * 109.47251 * 180.02562 * 1 2 3
29 29 H 1.09002 * 109.46422 * 300.00262 * 1 2 3
30 30 H 1.08998 * 109.46929 * 59.99698 * 1 2 3
31 31 H 1.09003 * 109.47164 * 295.00189 * 4 2 1
32 32 H 1.09001 * 109.47533 * 55.00010 * 4 2 1
33 33 H 0.97004 * 119.99156 * 180.02562 * 8 7 5
34 34 H 1.09002 * 109.48806 * 296.77967 * 14 13 2
35 35 H 1.09002 * 109.49141 * 56.82239 * 14 13 2
36 36 H 1.08999 * 109.48574 * 178.38177 * 15 14 13
37 37 H 1.09001 * 109.48542 * 298.44391 * 15 14 13
38 38 H 1.08995 * 109.47306 * 53.80731 * 17 16 15
39 39 H 1.08998 * 109.47458 * 173.81556 * 17 16 15
40 40 H 1.08001 * 119.99619 * 359.97438 * 19 18 17
41 41 H 1.07994 * 120.00378 * 180.23017 * 20 19 18
42 42 H 1.08001 * 120.00040 * 179.72996 * 21 20 19
43 43 H 1.07999 * 119.99815 * 179.97438 * 22 21 20
44 44 H 1.07989 * 120.00138 * 179.97438 * 23 22 21
45 45 H 1.09005 * 109.46876 * 179.89107 * 25 24 16
46 46 H 1.08998 * 109.47484 * 299.89234 * 25 24 16
47 47 H 1.09000 * 109.47041 * 59.89532 * 25 24 16
48 48 H 1.09002 * 109.46996 * 300.10893 * 26 24 16
49 49 H 1.09000 * 109.47263 * 60.10927 * 26 24 16
50 50 H 1.08999 * 109.47262 * 180.10403 * 26 24 16
51 51 H 1.09005 * 109.48958 * 303.16114 * 27 13 2
52 52 H 1.09002 * 109.48674 * 63.19711 * 27 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 3.5419 -0.6150 -1.3128
6 1 4.0789 -0.0856 -0.5397
7 6 4.2304 -1.1936 -2.3579
8 7 3.5763 -1.8379 -3.2996
9 14 6.0919 -1.0613 -2.4370
10 1 6.7008 -2.2133 -1.7247
11 1 6.5290 -1.0697 -3.8562
12 1 6.5261 0.2045 -1.7930
13 7 2.0197 -0.6925 1.1994
14 6 1.5281 -2.0767 1.2459
15 6 2.1230 -2.7863 2.4646
16 7 1.7489 -2.0557 3.6840
17 6 2.2386 -2.7482 4.8835
18 6 1.5263 -4.0685 5.0272
19 6 0.3514 -4.1448 5.7516
20 6 -0.3045 -5.3549 5.8794
21 6 0.2201 -6.4908 5.2916
22 6 1.3977 -6.4156 4.5716
23 6 2.0511 -5.2045 4.4397
24 6 2.2405 -0.6716 3.6375
25 6 3.7668 -0.6754 3.5313
26 6 1.8188 0.0629 4.9117
27 6 1.6455 0.0375 2.4187
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3632 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 1.7515 -1.7715 -1.2057
32 1 1.6053 -0.2618 -2.1370
33 1 4.0607 -2.2452 -4.0346
34 1 0.4407 -2.0740 1.3216
35 1 1.8281 -2.5999 0.3380
36 1 1.7370 -3.8043 2.5169
37 1 3.2091 -2.8129 2.3755
38 1 3.3106 -2.9221 4.7905
39 1 2.0450 -2.1334 5.7625
40 1 -0.0558 -3.2582 6.2149
41 1 -1.2243 -5.4138 6.4422
42 1 -0.2900 -7.4371 5.3951
43 1 1.8077 -7.3031 4.1127
44 1 2.9712 -5.1458 3.8775
45 1 4.1310 0.3514 3.4948
46 1 4.1902 -1.1805 4.3994
47 1 4.0666 -1.1996 2.6239
48 1 0.7315 0.0644 4.9873
49 1 2.2427 -0.4423 5.7795
50 1 2.1820 1.0900 4.8761
51 1 2.0315 1.0555 2.3659
52 1 0.5595 0.0645 2.5075
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000411237086.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:41:38
Heat of formation + Delta-G solvation = 37.682856 kcal
Electronic energy + Delta-G solvation = -28129.762418 eV
Core-core repulsion = 24708.028506 eV
Total energy + Delta-G solvation = -3421.733912 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.22279 -38.93543 -36.58275 -33.40759 -32.72204 -31.64464 -30.89957 -30.15773
-27.85057 -27.10482 -27.06525 -25.94659 -23.93461 -22.92749 -22.55107 -21.97095
-21.00023 -18.82671 -17.96977 -16.84275 -16.15155 -15.95684 -15.64901 -15.30560
-14.76811 -14.68655 -14.45232 -14.22527 -13.96845 -13.61632 -13.43372 -13.16524
-12.98107 -12.74103 -12.53955 -12.48181 -12.09234 -11.88161 -11.72443 -11.62347
-11.49069 -11.27286 -11.13086 -11.09389 -10.95784 -10.86243 -10.69355 -10.59686
-10.47044 -10.29637 -10.02523 -9.77931 -9.11387 -8.96092 -8.93058 -8.77712
-8.24703 -8.05591 -7.37433 -5.88055 -3.85644 1.30483 1.37759 3.38652
3.44898 3.48820 3.66181 4.21494 4.55495 4.59225 4.74448 4.82391
4.96399 4.98370 5.07016 5.20657 5.27496 5.35522 5.43144 5.47998
5.49104 5.61173 5.70482 5.73991 5.76764 5.82998 5.86831 5.91122
5.95893 5.98722 6.00424 6.04052 6.06556 6.08373 6.12128 6.23483
6.30593 6.42325 6.44919 6.46887 6.53375 6.61563 6.68057 6.75047
6.78494 6.96356 7.02376 7.25006 7.34239 7.59111 7.73321 7.95975
8.06831 8.14633 8.59652 9.20539 9.75980 11.23893
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.013321 B = 0.003890 C = 0.003593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2101.490500 B = 7195.871053 C = 7791.711260
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.087 3.913
3 H 0.068 0.932
4 C 0.029 3.971
5 C -0.488 4.488
6 H 0.060 0.940
7 C 0.051 3.949
8 N -0.903 5.903
9 Si 0.888 3.112
10 H -0.284 1.284
11 H -0.290 1.290
12 H -0.276 1.276
13 N -0.508 5.508
14 C 0.059 3.941
15 C 0.053 3.947
16 N -0.520 5.520
17 C 0.085 3.915
18 C -0.070 4.070
19 C -0.101 4.101
20 C -0.124 4.124
21 C -0.125 4.125
22 C -0.121 4.121
23 C -0.113 4.113
24 C 0.111 3.889
25 C -0.172 4.172
26 C -0.140 4.140
27 C 0.067 3.933
28 H 0.052 0.948
29 H 0.040 0.960
30 H 0.054 0.946
31 H 0.020 0.980
32 H 0.017 0.983
33 H 0.257 0.743
34 H 0.031 0.969
35 H 0.093 0.907
36 H 0.074 0.926
37 H 0.046 0.954
38 H 0.043 0.957
39 H 0.084 0.916
40 H 0.120 0.880
41 H 0.118 0.882
42 H 0.117 0.883
43 H 0.119 0.881
44 H 0.120 0.880
45 H 0.056 0.944
46 H 0.042 0.958
47 H 0.080 0.920
48 H 0.060 0.940
49 H 0.055 0.945
50 H 0.059 0.941
51 H 0.070 0.930
52 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.180 -3.635 19.468 20.746
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.021 4.021
3 H 0.086 0.914
4 C -0.008 4.008
5 C -0.527 4.527
6 H 0.078 0.922
7 C -0.148 4.148
8 N -0.544 5.544
9 Si 0.717 3.283
10 H -0.210 1.210
11 H -0.216 1.216
12 H -0.201 1.201
13 N -0.231 5.231
14 C -0.069 4.069
15 C -0.074 4.074
16 N -0.245 5.245
17 C -0.042 4.042
18 C -0.070 4.070
19 C -0.120 4.120
20 C -0.142 4.142
21 C -0.144 4.144
22 C -0.139 4.139
23 C -0.131 4.131
24 C 0.021 3.979
25 C -0.230 4.230
26 C -0.198 4.198
27 C -0.062 4.062
28 H 0.071 0.929
29 H 0.059 0.941
30 H 0.073 0.927
31 H 0.038 0.962
32 H 0.036 0.964
33 H 0.066 0.934
34 H 0.049 0.951
35 H 0.111 0.889
36 H 0.092 0.908
37 H 0.065 0.935
38 H 0.061 0.939
39 H 0.102 0.898
40 H 0.138 0.862
41 H 0.136 0.864
42 H 0.135 0.865
43 H 0.137 0.863
44 H 0.138 0.862
45 H 0.075 0.925
46 H 0.061 0.939
47 H 0.099 0.901
48 H 0.079 0.921
49 H 0.074 0.926
50 H 0.078 0.922
51 H 0.088 0.912
52 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -6.136 -3.702 19.287 20.575
hybrid contribution 1.002 -0.070 -0.210 1.027
sum -5.133 -3.772 19.077 20.112
Atomic orbital electron populations
1.22504 0.99821 1.01313 1.00556 1.21887 0.90032 0.98332 0.91802
0.91369 1.19221 0.96310 0.95352 0.89902 1.21169 0.91793 1.32842
1.06905 0.92188 1.24994 0.97851 0.95966 0.96006 1.69968 1.35115
1.36976 1.12381 0.86662 0.86623 0.78289 0.76762 1.21007 1.21641
1.20062 1.62267 1.58703 1.01338 1.00840 1.22150 0.96674 0.90349
0.97769 1.22307 0.99172 0.97099 0.88862 1.62433 1.58958 1.01475
1.01627 1.21145 0.96348 0.91959 0.94758 1.19804 0.95597 0.94589
0.97013 1.20987 0.94675 0.97469 0.98843 1.21115 0.99824 0.92967
1.00281 1.21110 0.96427 0.98377 0.98453 1.21120 0.95826 0.97705
0.99236 1.21129 1.00249 0.92486 0.99264 1.21074 0.93442 0.88260
0.95133 1.22354 0.95932 1.02543 1.02194 1.21912 1.01757 0.99768
0.96359 1.22122 0.97545 0.96972 0.89562 0.92926 0.94069 0.92735
0.96228 0.96441 0.93362 0.95071 0.88901 0.90783 0.93548 0.93874
0.89766 0.86243 0.86397 0.86464 0.86251 0.86226 0.92467 0.93905
0.90135 0.92120 0.92608 0.92209 0.91179 0.94782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16
2 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16
3 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16
4 C 0.03 0.73 4.27 -27.88 -0.12 0.61 16
5 C -0.49 -13.50 8.84 -34.44 -0.30 -13.81 16
6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16
7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16
8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16
9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16
10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16
11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
13 N -0.51 -9.46 3.73 -226.49 -0.85 -10.30 16
14 C 0.06 1.07 4.82 -3.76 -0.02 1.05 16
15 C 0.05 0.84 4.88 -3.74 -0.02 0.82 16
16 N -0.52 -7.15 4.47 -220.22 -0.98 -8.13 16
17 C 0.09 1.01 4.27 -4.97 -0.02 0.98 16
18 C -0.07 -0.82 4.89 -104.62 -0.51 -1.33 16
19 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16
20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16
21 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16
22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16
23 C -0.11 -1.32 7.92 -39.58 -0.31 -1.63 16
24 C 0.11 1.50 0.68 -131.55 -0.09 1.41 16
25 C -0.17 -2.44 7.65 37.16 0.28 -2.16 16
26 C -0.14 -1.54 8.17 37.16 0.30 -1.23 16
27 C 0.07 1.05 3.96 -3.77 -0.01 1.03 16
28 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16
29 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16
30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16
32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
34 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16
35 H 0.09 1.95 6.07 -51.93 -0.32 1.64 16
36 H 0.07 1.13 5.95 -51.93 -0.31 0.82 16
37 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16
38 H 0.04 0.52 6.85 -51.93 -0.36 0.17 16
39 H 0.08 0.90 5.67 -51.93 -0.29 0.60 16
40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16
42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16
43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16
44 H 0.12 1.36 7.99 -52.49 -0.42 0.94 16
45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16
47 H 0.08 1.38 5.94 -51.93 -0.31 1.08 16
48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
49 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16
50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
51 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16
52 H 0.03 0.54 6.59 -51.93 -0.34 0.20 16
LS Contribution 383.92 15.07 5.79 5.79
Total: -1.00 -29.47 383.92 -11.53 -41.00
By element:
Atomic # 1 Polarization: 10.57 SS G_CDS: -8.86 Total: 1.70 kcal
Atomic # 6 Polarization: -18.34 SS G_CDS: -2.34 Total: -20.68 kcal
Atomic # 7 Polarization: -43.68 SS G_CDS: -1.09 Total: -44.77 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -29.47 -11.53 -41.00 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411237086.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.680 kcal
(2) G-P(sol) polarization free energy of solvation -29.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds