Wall clock time and date at job start Tue Mar 31 2020 11:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47692 * 2 1 4 4 C 1.53003 * 109.46775 * 240.00094 * 2 1 3 5 5 C 1.50708 * 109.47114 * 175.00233 * 4 2 1 6 6 H 1.07996 * 119.99756 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00021 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47420 * 90.00184 * 9 7 5 11 11 H 1.48501 * 109.47380 * 210.00530 * 9 7 5 12 12 H 1.48508 * 109.47325 * 330.00174 * 9 7 5 13 13 N 1.46897 * 109.47071 * 120.00222 * 2 1 3 14 14 C 1.46956 * 111.00174 * 58.95140 * 13 2 1 15 15 C 1.53056 * 109.38342 * 176.80239 * 14 13 2 16 16 N 1.46992 * 109.33916 * 58.38486 * 15 14 13 17 17 C 1.46902 * 110.99349 * 176.82325 * 16 15 14 18 18 C 1.50703 * 109.46956 * 293.81281 * 17 16 15 19 19 C 1.38232 * 120.00368 * 269.72564 * 18 17 16 20 20 C 1.38237 * 120.00350 * 179.76817 * 19 18 17 21 21 C 1.38236 * 119.99548 * 0.50759 * 20 19 18 22 22 C 1.38238 * 120.00211 * 359.74057 * 21 20 19 23 23 C 1.38234 * 120.00068 * 0.02562 * 22 21 20 24 24 C 1.46956 * 110.89694 * 300.69699 * 16 15 14 25 25 C 1.52997 * 109.48604 * 299.34946 * 24 16 15 26 26 C 1.53005 * 109.48866 * 179.28799 * 24 16 15 27 27 C 1.46954 * 111.00197 * 295.14841 * 13 2 1 28 28 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46422 * 300.00262 * 1 2 3 30 30 H 1.08998 * 109.46929 * 59.99698 * 1 2 3 31 31 H 1.09003 * 109.47164 * 295.00189 * 4 2 1 32 32 H 1.09001 * 109.47533 * 55.00010 * 4 2 1 33 33 H 0.97004 * 119.99156 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.48806 * 296.77967 * 14 13 2 35 35 H 1.09002 * 109.49141 * 56.82239 * 14 13 2 36 36 H 1.08999 * 109.48574 * 178.38177 * 15 14 13 37 37 H 1.09001 * 109.48542 * 298.44391 * 15 14 13 38 38 H 1.08995 * 109.47306 * 53.80731 * 17 16 15 39 39 H 1.08998 * 109.47458 * 173.81556 * 17 16 15 40 40 H 1.08001 * 119.99619 * 359.97438 * 19 18 17 41 41 H 1.07994 * 120.00378 * 180.23017 * 20 19 18 42 42 H 1.08001 * 120.00040 * 179.72996 * 21 20 19 43 43 H 1.07999 * 119.99815 * 179.97438 * 22 21 20 44 44 H 1.07989 * 120.00138 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.46876 * 179.89107 * 25 24 16 46 46 H 1.08998 * 109.47484 * 299.89234 * 25 24 16 47 47 H 1.09000 * 109.47041 * 59.89532 * 25 24 16 48 48 H 1.09002 * 109.46996 * 300.10893 * 26 24 16 49 49 H 1.09000 * 109.47263 * 60.10927 * 26 24 16 50 50 H 1.08999 * 109.47262 * 180.10403 * 26 24 16 51 51 H 1.09005 * 109.48958 * 303.16114 * 27 13 2 52 52 H 1.09002 * 109.48674 * 63.19711 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5397 7 6 4.2304 -1.1936 -2.3579 8 7 3.5763 -1.8379 -3.2996 9 14 6.0919 -1.0613 -2.4370 10 1 6.7008 -2.2133 -1.7247 11 1 6.5290 -1.0697 -3.8562 12 1 6.5261 0.2045 -1.7930 13 7 2.0197 -0.6925 1.1994 14 6 1.5281 -2.0767 1.2459 15 6 2.1230 -2.7863 2.4646 16 7 1.7489 -2.0557 3.6840 17 6 2.2386 -2.7482 4.8835 18 6 1.5263 -4.0685 5.0272 19 6 0.3514 -4.1448 5.7516 20 6 -0.3045 -5.3549 5.8794 21 6 0.2201 -6.4908 5.2916 22 6 1.3977 -6.4156 4.5716 23 6 2.0511 -5.2045 4.4397 24 6 2.2405 -0.6716 3.6375 25 6 3.7668 -0.6754 3.5313 26 6 1.8188 0.0629 4.9117 27 6 1.6455 0.0375 2.4187 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2618 -2.1370 33 1 4.0607 -2.2452 -4.0346 34 1 0.4407 -2.0740 1.3216 35 1 1.8281 -2.5999 0.3380 36 1 1.7370 -3.8043 2.5169 37 1 3.2091 -2.8129 2.3755 38 1 3.3106 -2.9221 4.7905 39 1 2.0450 -2.1334 5.7625 40 1 -0.0558 -3.2582 6.2149 41 1 -1.2243 -5.4138 6.4422 42 1 -0.2900 -7.4371 5.3951 43 1 1.8077 -7.3031 4.1127 44 1 2.9712 -5.1458 3.8775 45 1 4.1310 0.3514 3.4948 46 1 4.1902 -1.1805 4.3994 47 1 4.0666 -1.1996 2.6239 48 1 0.7315 0.0644 4.9873 49 1 2.2427 -0.4423 5.7795 50 1 2.1820 1.0900 4.8761 51 1 2.0315 1.0555 2.3659 52 1 0.5595 0.0645 2.5075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411237086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:38 Heat of formation + Delta-G solvation = 37.682856 kcal Electronic energy + Delta-G solvation = -28129.762418 eV Core-core repulsion = 24708.028506 eV Total energy + Delta-G solvation = -3421.733912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22279 -38.93543 -36.58275 -33.40759 -32.72204 -31.64464 -30.89957 -30.15773 -27.85057 -27.10482 -27.06525 -25.94659 -23.93461 -22.92749 -22.55107 -21.97095 -21.00023 -18.82671 -17.96977 -16.84275 -16.15155 -15.95684 -15.64901 -15.30560 -14.76811 -14.68655 -14.45232 -14.22527 -13.96845 -13.61632 -13.43372 -13.16524 -12.98107 -12.74103 -12.53955 -12.48181 -12.09234 -11.88161 -11.72443 -11.62347 -11.49069 -11.27286 -11.13086 -11.09389 -10.95784 -10.86243 -10.69355 -10.59686 -10.47044 -10.29637 -10.02523 -9.77931 -9.11387 -8.96092 -8.93058 -8.77712 -8.24703 -8.05591 -7.37433 -5.88055 -3.85644 1.30483 1.37759 3.38652 3.44898 3.48820 3.66181 4.21494 4.55495 4.59225 4.74448 4.82391 4.96399 4.98370 5.07016 5.20657 5.27496 5.35522 5.43144 5.47998 5.49104 5.61173 5.70482 5.73991 5.76764 5.82998 5.86831 5.91122 5.95893 5.98722 6.00424 6.04052 6.06556 6.08373 6.12128 6.23483 6.30593 6.42325 6.44919 6.46887 6.53375 6.61563 6.68057 6.75047 6.78494 6.96356 7.02376 7.25006 7.34239 7.59111 7.73321 7.95975 8.06831 8.14633 8.59652 9.20539 9.75980 11.23893 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003890 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.490500 B = 7195.871053 C = 7791.711260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.508 5.508 14 C 0.059 3.941 15 C 0.053 3.947 16 N -0.520 5.520 17 C 0.085 3.915 18 C -0.070 4.070 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.113 4.113 24 C 0.111 3.889 25 C -0.172 4.172 26 C -0.140 4.140 27 C 0.067 3.933 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.257 0.743 34 H 0.031 0.969 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.070 0.930 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.180 -3.635 19.468 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.231 5.231 14 C -0.069 4.069 15 C -0.074 4.074 16 N -0.245 5.245 17 C -0.042 4.042 18 C -0.070 4.070 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.131 4.131 24 C 0.021 3.979 25 C -0.230 4.230 26 C -0.198 4.198 27 C -0.062 4.062 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.075 0.925 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.088 0.912 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.136 -3.702 19.287 20.575 hybrid contribution 1.002 -0.070 -0.210 1.027 sum -5.133 -3.772 19.077 20.112 Atomic orbital electron populations 1.22504 0.99821 1.01313 1.00556 1.21887 0.90032 0.98332 0.91802 0.91369 1.19221 0.96310 0.95352 0.89902 1.21169 0.91793 1.32842 1.06905 0.92188 1.24994 0.97851 0.95966 0.96006 1.69968 1.35115 1.36976 1.12381 0.86662 0.86623 0.78289 0.76762 1.21007 1.21641 1.20062 1.62267 1.58703 1.01338 1.00840 1.22150 0.96674 0.90349 0.97769 1.22307 0.99172 0.97099 0.88862 1.62433 1.58958 1.01475 1.01627 1.21145 0.96348 0.91959 0.94758 1.19804 0.95597 0.94589 0.97013 1.20987 0.94675 0.97469 0.98843 1.21115 0.99824 0.92967 1.00281 1.21110 0.96427 0.98377 0.98453 1.21120 0.95826 0.97705 0.99236 1.21129 1.00249 0.92486 0.99264 1.21074 0.93442 0.88260 0.95133 1.22354 0.95932 1.02543 1.02194 1.21912 1.01757 0.99768 0.96359 1.22122 0.97545 0.96972 0.89562 0.92926 0.94069 0.92735 0.96228 0.96441 0.93362 0.95071 0.88901 0.90783 0.93548 0.93874 0.89766 0.86243 0.86397 0.86464 0.86251 0.86226 0.92467 0.93905 0.90135 0.92120 0.92608 0.92209 0.91179 0.94782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16 2 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 3 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 4 C 0.03 0.73 4.27 -27.88 -0.12 0.61 16 5 C -0.49 -13.50 8.84 -34.44 -0.30 -13.81 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.51 -9.46 3.73 -226.49 -0.85 -10.30 16 14 C 0.06 1.07 4.82 -3.76 -0.02 1.05 16 15 C 0.05 0.84 4.88 -3.74 -0.02 0.82 16 16 N -0.52 -7.15 4.47 -220.22 -0.98 -8.13 16 17 C 0.09 1.01 4.27 -4.97 -0.02 0.98 16 18 C -0.07 -0.82 4.89 -104.62 -0.51 -1.33 16 19 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 20 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 21 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.11 -1.32 7.92 -39.58 -0.31 -1.63 16 24 C 0.11 1.50 0.68 -131.55 -0.09 1.41 16 25 C -0.17 -2.44 7.65 37.16 0.28 -2.16 16 26 C -0.14 -1.54 8.17 37.16 0.30 -1.23 16 27 C 0.07 1.05 3.96 -3.77 -0.01 1.03 16 28 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 29 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16 35 H 0.09 1.95 6.07 -51.93 -0.32 1.64 16 36 H 0.07 1.13 5.95 -51.93 -0.31 0.82 16 37 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16 38 H 0.04 0.52 6.85 -51.93 -0.36 0.17 16 39 H 0.08 0.90 5.67 -51.93 -0.29 0.60 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.36 7.99 -52.49 -0.42 0.94 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16 47 H 0.08 1.38 5.94 -51.93 -0.31 1.08 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 52 H 0.03 0.54 6.59 -51.93 -0.34 0.20 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -29.47 383.92 -11.53 -41.00 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.86 Total: 1.70 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.34 Total: -20.68 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.09 Total: -44.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.47 -11.53 -41.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411237086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.680 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds