Wall clock time and date at job start Tue Mar 31 2020 11:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47692 * 2 1 4 4 C 1.53003 * 109.46775 * 240.00094 * 2 1 3 5 5 C 1.50708 * 109.47114 * 175.00233 * 4 2 1 6 6 H 1.07996 * 119.99756 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00021 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99641 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 119.99910 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47420 * 90.00184 * 9 7 5 11 11 H 1.48501 * 109.47380 * 210.00530 * 9 7 5 12 12 H 1.48508 * 109.47325 * 330.00174 * 9 7 5 13 13 N 1.46897 * 109.47071 * 120.00222 * 2 1 3 14 14 C 1.46956 * 111.00174 * 58.95140 * 13 2 1 15 15 C 1.53056 * 109.38342 * 176.80239 * 14 13 2 16 16 N 1.46992 * 109.33916 * 58.38486 * 15 14 13 17 17 C 1.46902 * 110.99349 * 176.82325 * 16 15 14 18 18 C 1.50703 * 109.46956 * 293.81281 * 17 16 15 19 19 C 1.38232 * 120.00368 * 269.72564 * 18 17 16 20 20 C 1.38237 * 120.00350 * 179.76817 * 19 18 17 21 21 C 1.38236 * 119.99548 * 0.50759 * 20 19 18 22 22 C 1.38238 * 120.00211 * 359.74057 * 21 20 19 23 23 C 1.38234 * 120.00068 * 0.02562 * 22 21 20 24 24 C 1.46956 * 110.89694 * 300.69699 * 16 15 14 25 25 C 1.52997 * 109.48604 * 299.34946 * 24 16 15 26 26 C 1.53005 * 109.48866 * 179.28799 * 24 16 15 27 27 C 1.46954 * 111.00197 * 295.14841 * 13 2 1 28 28 H 1.08993 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46422 * 300.00262 * 1 2 3 30 30 H 1.08998 * 109.46929 * 59.99698 * 1 2 3 31 31 H 1.09003 * 109.47164 * 295.00189 * 4 2 1 32 32 H 1.09001 * 109.47533 * 55.00010 * 4 2 1 33 33 H 0.97004 * 119.99156 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.48806 * 296.77967 * 14 13 2 35 35 H 1.09002 * 109.49141 * 56.82239 * 14 13 2 36 36 H 1.08999 * 109.48574 * 178.38177 * 15 14 13 37 37 H 1.09001 * 109.48542 * 298.44391 * 15 14 13 38 38 H 1.08995 * 109.47306 * 53.80731 * 17 16 15 39 39 H 1.08998 * 109.47458 * 173.81556 * 17 16 15 40 40 H 1.08001 * 119.99619 * 359.97438 * 19 18 17 41 41 H 1.07994 * 120.00378 * 180.23017 * 20 19 18 42 42 H 1.08001 * 120.00040 * 179.72996 * 21 20 19 43 43 H 1.07999 * 119.99815 * 179.97438 * 22 21 20 44 44 H 1.07989 * 120.00138 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.46876 * 179.89107 * 25 24 16 46 46 H 1.08998 * 109.47484 * 299.89234 * 25 24 16 47 47 H 1.09000 * 109.47041 * 59.89532 * 25 24 16 48 48 H 1.09002 * 109.46996 * 300.10893 * 26 24 16 49 49 H 1.09000 * 109.47263 * 60.10927 * 26 24 16 50 50 H 1.08999 * 109.47262 * 180.10403 * 26 24 16 51 51 H 1.09005 * 109.48958 * 303.16114 * 27 13 2 52 52 H 1.09002 * 109.48674 * 63.19711 * 27 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3128 6 1 4.0789 -0.0856 -0.5397 7 6 4.2304 -1.1936 -2.3579 8 7 3.5763 -1.8379 -3.2996 9 14 6.0919 -1.0613 -2.4370 10 1 6.7008 -2.2133 -1.7247 11 1 6.5290 -1.0697 -3.8562 12 1 6.5261 0.2045 -1.7930 13 7 2.0197 -0.6925 1.1994 14 6 1.5281 -2.0767 1.2459 15 6 2.1230 -2.7863 2.4646 16 7 1.7489 -2.0557 3.6840 17 6 2.2386 -2.7482 4.8835 18 6 1.5263 -4.0685 5.0272 19 6 0.3514 -4.1448 5.7516 20 6 -0.3045 -5.3549 5.8794 21 6 0.2201 -6.4908 5.2916 22 6 1.3977 -6.4156 4.5716 23 6 2.0511 -5.2045 4.4397 24 6 2.2405 -0.6716 3.6375 25 6 3.7668 -0.6754 3.5313 26 6 1.8188 0.0629 4.9117 27 6 1.6455 0.0375 2.4187 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2618 -2.1370 33 1 4.0607 -2.2452 -4.0346 34 1 0.4407 -2.0740 1.3216 35 1 1.8281 -2.5999 0.3380 36 1 1.7370 -3.8043 2.5169 37 1 3.2091 -2.8129 2.3755 38 1 3.3106 -2.9221 4.7905 39 1 2.0450 -2.1334 5.7625 40 1 -0.0558 -3.2582 6.2149 41 1 -1.2243 -5.4138 6.4422 42 1 -0.2900 -7.4371 5.3951 43 1 1.8077 -7.3031 4.1127 44 1 2.9712 -5.1458 3.8775 45 1 4.1310 0.3514 3.4948 46 1 4.1902 -1.1805 4.3994 47 1 4.0666 -1.1996 2.6239 48 1 0.7315 0.0644 4.9873 49 1 2.2427 -0.4423 5.7795 50 1 2.1820 1.0900 4.8761 51 1 2.0315 1.0555 2.3659 52 1 0.5595 0.0645 2.5075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411237086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:37 Heat of formation + Delta-G solvation = 21.706940 kcal Electronic energy + Delta-G solvation = -28130.455186 eV Core-core repulsion = 24708.028506 eV Total energy + Delta-G solvation = -3422.426680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37818 -39.88652 -37.98438 -34.93923 -34.28750 -32.99651 -31.72484 -31.47499 -29.42260 -28.60729 -28.10669 -27.13391 -25.39420 -24.43346 -23.76591 -23.13389 -21.90128 -20.38617 -19.20123 -18.34185 -17.67238 -17.21549 -16.76182 -16.46143 -16.30167 -15.93941 -15.76715 -15.51736 -15.12671 -14.85266 -14.67039 -14.26956 -14.19959 -13.99135 -13.76709 -13.60208 -13.43944 -13.41039 -13.12128 -12.96375 -12.77282 -12.64531 -12.59183 -12.41824 -12.26236 -12.15779 -12.09077 -11.93995 -11.89236 -11.71355 -11.45900 -11.24311 -11.07876 -10.87481 -10.46989 -9.74684 -9.63462 -9.18820 -8.83991 -8.09658 -6.13987 0.48136 0.56759 1.40418 1.40722 1.51643 2.46577 2.75994 3.12185 3.20668 3.28351 3.84755 3.85763 3.99424 4.07483 4.15335 4.21244 4.27430 4.30893 4.33942 4.37498 4.45121 4.46384 4.55469 4.61325 4.66463 4.71719 4.73586 4.80567 4.81826 4.88134 4.92511 4.98216 5.00225 5.05794 5.08493 5.16724 5.21326 5.22498 5.24973 5.31836 5.33244 5.50404 5.55998 5.62758 5.67861 5.71342 5.76857 5.90887 6.12403 6.15283 6.22735 6.35867 6.46947 6.57091 6.99732 7.51663 9.02432 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003890 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.490500 B = 7195.871053 C = 7791.711260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.095 3.905 3 H 0.065 0.935 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.522 5.522 14 C 0.067 3.933 15 C 0.067 3.933 16 N -0.518 5.518 17 C 0.090 3.910 18 C -0.084 4.084 19 C -0.108 4.108 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.130 4.130 24 C 0.111 3.889 25 C -0.165 4.165 26 C -0.132 4.132 27 C 0.068 3.932 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.055 0.945 31 H -0.003 1.003 32 H -0.010 1.010 33 H 0.258 0.742 34 H 0.032 0.968 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.038 0.962 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -3.138 22.273 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.013 4.013 3 H 0.083 0.917 4 C 0.000 4.000 5 C -0.534 4.534 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.191 1.191 13 N -0.245 5.245 14 C -0.061 4.061 15 C -0.061 4.061 16 N -0.242 5.242 17 C -0.037 4.037 18 C -0.084 4.084 19 C -0.127 4.127 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.150 4.150 23 C -0.149 4.149 24 C 0.021 3.979 25 C -0.224 4.224 26 C -0.190 4.190 27 C -0.060 4.060 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.015 0.985 32 H 0.008 0.992 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.131 0.869 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.497 -3.195 22.115 23.270 hybrid contribution 1.082 -0.268 -1.074 1.548 sum -5.415 -3.463 21.042 22.001 Atomic orbital electron populations 1.22353 0.97524 1.01296 1.01830 1.21599 0.91819 0.97277 0.90626 0.91709 1.19059 0.95233 0.94316 0.91420 1.21452 0.93142 1.32215 1.06542 0.92497 1.25805 1.02571 0.95737 0.95756 1.70098 1.36949 1.38062 1.13085 0.85627 0.81008 0.78585 0.76855 1.20549 1.21235 1.19069 1.62167 1.59284 1.01596 1.01495 1.21964 0.96668 0.90170 0.97297 1.22062 0.97812 0.97183 0.89064 1.62432 1.58924 1.01552 1.01332 1.21172 0.96039 0.92295 0.94191 1.19862 0.96315 0.94391 0.97856 1.21210 0.94359 0.98451 0.98674 1.21448 1.00487 0.92595 1.00010 1.21436 0.96091 0.99512 0.97716 1.21359 0.96284 0.97833 0.99508 1.21218 1.00481 0.93273 0.99879 1.21136 0.92787 0.88290 0.95677 1.22277 0.96623 1.02375 1.01138 1.21856 1.02141 1.00080 0.94936 1.22207 0.97938 0.97082 0.88800 0.93558 0.91612 0.92560 0.98512 0.99199 0.93346 0.94968 0.92813 0.90502 0.95220 0.94373 0.87843 0.84911 0.84100 0.84306 0.85100 0.86928 0.92126 0.92300 0.93644 0.91668 0.91058 0.91099 0.90697 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.96 8.49 71.98 0.61 -5.35 16 2 C 0.10 3.92 2.30 44.92 0.10 4.03 16 3 H 0.06 2.71 8.12 -2.39 -0.02 2.69 16 4 C 0.04 1.94 4.27 29.85 0.13 2.06 16 5 C -0.50 -28.21 8.84 25.60 0.23 -27.98 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 8 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 N -0.52 -19.65 3.73 -870.47 -3.25 -22.90 16 14 C 0.07 2.53 4.82 86.31 0.42 2.95 16 15 C 0.07 2.14 4.88 86.30 0.42 2.56 16 16 N -0.52 -13.55 4.47 -850.64 -3.80 -17.34 16 17 C 0.09 1.96 4.27 85.56 0.37 2.33 16 18 C -0.08 -1.86 4.89 -19.86 -0.10 -1.96 16 19 C -0.11 -2.13 9.70 22.27 0.22 -1.92 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 23 C -0.13 -2.99 7.92 22.27 0.18 -2.81 16 24 C 0.11 2.80 0.68 3.53 0.00 2.80 16 25 C -0.17 -4.51 7.65 71.98 0.55 -3.96 16 26 C -0.13 -2.44 8.17 71.98 0.59 -1.85 16 27 C 0.07 2.03 3.96 86.31 0.34 2.37 16 28 H 0.05 1.66 6.46 -2.39 -0.02 1.64 16 29 H 0.06 1.97 6.59 -2.39 -0.02 1.95 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.00 -0.19 6.11 -2.39 -0.01 -0.20 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.03 1.19 6.47 -2.39 -0.02 1.17 16 35 H 0.05 2.42 6.07 -2.39 -0.01 2.41 16 36 H 0.08 2.39 5.95 -2.39 -0.01 2.38 16 37 H 0.03 1.04 6.34 -2.39 -0.02 1.03 16 38 H 0.04 0.88 6.85 -2.39 -0.02 0.86 16 39 H 0.10 1.87 5.67 -2.39 -0.01 1.85 16 40 H 0.13 2.19 8.06 -2.91 -0.02 2.16 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.11 2.64 7.99 -2.92 -0.02 2.61 16 45 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.06 1.39 6.71 -2.39 -0.02 1.37 16 47 H 0.04 1.57 5.94 -2.39 -0.01 1.55 16 48 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.11 6.15 -2.39 -0.01 1.10 16 50 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.07 2.17 8.12 -2.38 -0.02 2.15 16 52 H 0.04 1.12 6.59 -2.39 -0.02 1.11 16 Total: -1.00 -65.07 383.92 1.33 -63.75 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.88 Total: 19.45 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.18 Total: -33.05 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -6.76 Total: -98.02 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -65.07 1.33 -63.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411237086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.455 kcal (2) G-P(sol) polarization free energy of solvation -65.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds