Wall clock time and date at job start Tue Mar 31 2020 11:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46974 * 2 1 4 4 N 1.46497 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99788 * 275.65132 * 4 3 2 6 6 H 1.08000 * 119.99764 * 33.99687 * 5 4 3 7 7 C 1.38808 * 120.00039 * 213.98802 * 5 4 3 8 8 N 1.31615 * 120.00141 * 22.96342 * 7 5 4 9 9 Si 1.86805 * 119.99966 * 202.96249 * 7 5 4 10 10 H 1.48497 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47057 * 120.00252 * 9 7 5 12 12 H 1.48493 * 109.47012 * 240.00208 * 9 7 5 13 13 C 1.46498 * 120.00340 * 95.65747 * 4 3 2 14 14 C 1.50707 * 109.46919 * 269.99938 * 13 4 3 15 15 C 1.38251 * 119.99977 * 89.99669 * 14 13 4 16 16 C 1.38219 * 120.00066 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.99627 * 0.02562 * 16 15 14 18 18 C 1.38214 * 120.00381 * 359.95508 * 17 16 15 19 19 C 1.50698 * 120.00278 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47111 * 89.99823 * 19 18 17 21 21 C 1.46845 * 111.00022 * 294.21445 * 20 19 18 22 22 C 1.53041 * 109.52096 * 174.16163 * 21 20 19 23 23 C 1.53116 * 109.28001 * 59.17549 * 22 21 20 24 24 C 1.53118 * 109.15948 * 302.34401 * 23 22 21 25 25 C 1.46845 * 110.99733 * 169.99887 * 20 19 18 26 26 C 1.38213 * 119.99778 * 270.20558 * 14 13 4 27 27 H 1.08998 * 109.47242 * 59.99777 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47133 * 299.99797 * 1 2 3 30 30 H 1.09004 * 109.47133 * 240.00202 * 2 1 3 31 31 H 1.08995 * 109.47559 * 119.99810 * 2 1 3 32 32 H 1.09004 * 109.47025 * 60.00137 * 3 2 1 33 33 H 1.08995 * 109.46822 * 300.00261 * 3 2 1 34 34 H 0.97005 * 120.00089 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47233 * 150.00114 * 13 4 3 36 36 H 1.08997 * 109.46984 * 29.99909 * 13 4 3 37 37 H 1.07996 * 120.00192 * 0.02562 * 15 14 13 38 38 H 1.07996 * 120.00224 * 179.97438 * 16 15 14 39 39 H 1.08003 * 119.99901 * 179.97438 * 17 16 15 40 40 H 1.09004 * 109.46991 * 329.99907 * 19 18 17 41 41 H 1.08999 * 109.47158 * 209.99962 * 19 18 17 42 42 H 1.09000 * 109.45994 * 294.17362 * 21 20 19 43 43 H 1.08998 * 109.46805 * 54.14381 * 21 20 19 44 44 H 1.09001 * 109.50054 * 299.23535 * 22 21 20 45 45 H 1.08998 * 109.50246 * 179.11848 * 22 21 20 46 46 H 1.09002 * 109.52216 * 182.43829 * 23 22 21 47 47 H 1.08995 * 109.52119 * 62.25373 * 23 22 21 48 48 H 1.08990 * 109.50847 * 297.71237 * 24 23 22 49 49 H 1.09007 * 109.49899 * 177.59403 * 24 23 22 50 50 H 1.09000 * 109.46632 * 305.85466 * 25 20 19 51 51 H 1.09000 * 109.46134 * 65.83332 * 25 20 19 52 52 H 1.08004 * 120.00029 * 0.02585 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3257 1.1793 6 1 3.7888 0.7209 1.9790 7 6 5.4004 1.9843 1.3473 8 7 5.6810 3.0422 0.6163 9 14 6.6310 1.3691 2.6110 10 1 6.0802 0.1725 3.2965 11 1 7.9008 1.0086 1.9306 12 1 6.8903 2.4368 3.6098 13 6 4.2370 1.5679 -1.2634 14 6 4.4879 0.1969 -1.8366 15 6 3.5659 -0.3729 -2.6949 16 6 3.7958 -1.6305 -3.2202 17 6 4.9476 -2.3188 -2.8870 18 6 5.8696 -1.7491 -2.0293 19 6 7.1253 -2.4991 -1.6665 20 7 8.1860 -2.1727 -2.6290 21 6 7.8510 -2.6692 -3.9698 22 6 8.9031 -2.1873 -4.9713 23 6 10.2804 -2.7027 -4.5450 24 6 10.5841 -2.2114 -3.1269 25 6 9.4834 -2.6928 -2.1788 26 6 5.6378 -0.4926 -1.5010 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 6.5266 3.5027 0.7340 35 1 5.1895 2.0663 -1.0833 36 1 3.6476 2.1542 -1.9684 37 1 2.6660 0.1646 -2.9548 38 1 3.0754 -2.0758 -3.8903 39 1 5.1271 -3.3017 -3.2971 40 1 6.9286 -3.5709 -1.6923 41 1 7.4433 -2.2120 -0.6643 42 1 7.8321 -3.7590 -3.9591 43 1 6.8712 -2.2920 -4.2626 44 1 8.9130 -1.0975 -4.9925 45 1 8.6628 -2.5690 -5.9635 46 1 11.0388 -2.3259 -5.2313 47 1 10.2825 -3.7926 -4.5612 48 1 10.6204 -1.1221 -3.1191 49 1 11.5449 -2.6105 -2.8015 50 1 9.6891 -2.3325 -1.1709 51 1 9.4568 -3.7824 -2.1767 52 1 6.3563 -0.0490 -0.8275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411276839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:24 Heat of formation + Delta-G solvation = 27.695393 kcal Electronic energy + Delta-G solvation = -27561.960720 eV Core-core repulsion = 24139.793719 eV Total energy + Delta-G solvation = -3422.167001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.45431 -38.24704 -36.03359 -33.91505 -32.98676 -31.41486 -30.83762 -30.41485 -29.89744 -26.09242 -25.71619 -25.45477 -23.12433 -22.89900 -22.21021 -21.07724 -20.22059 -19.69475 -19.59878 -16.67424 -16.06533 -15.84805 -15.23596 -15.03607 -14.56705 -14.48511 -14.31897 -14.16695 -13.86587 -13.61464 -13.38309 -13.24296 -13.09469 -12.85124 -12.43138 -12.40847 -12.06329 -11.76901 -11.60083 -11.49779 -11.34935 -11.22409 -10.96719 -10.93604 -10.78032 -10.75725 -10.57118 -10.43308 -10.37136 -10.28057 -10.11520 -9.92871 -9.81705 -9.67197 -8.47777 -8.27275 -8.05851 -7.84709 -6.59881 -5.78152 -3.31140 1.98769 2.14325 3.35483 3.45151 3.47722 3.97185 4.46809 4.59068 4.77360 4.81452 4.87947 5.10943 5.26601 5.28163 5.32461 5.42428 5.50474 5.53228 5.57053 5.57690 5.62548 5.68116 5.71577 5.78064 5.81178 5.84458 5.86728 5.97425 6.01294 6.08747 6.11992 6.15824 6.21790 6.29138 6.32359 6.35937 6.49311 6.52873 6.63196 6.66712 6.79491 6.87384 7.00966 7.07349 7.15202 7.20607 7.23799 7.30816 7.49958 7.70533 7.81632 7.84184 8.51366 9.18954 9.83062 10.39166 11.21429 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.004497 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.383183 B = 6225.374016 C = 7834.389112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.576 5.576 5 C -0.249 4.249 6 H 0.060 0.940 7 C 0.011 3.989 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.290 1.290 13 C 0.169 3.831 14 C -0.067 4.067 15 C -0.119 4.119 16 C -0.130 4.130 17 C -0.137 4.137 18 C -0.087 4.087 19 C 0.099 3.901 20 N -0.530 5.530 21 C 0.053 3.947 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C 0.055 3.945 26 C -0.074 4.074 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.255 0.745 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.081 0.919 42 H 0.025 0.975 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.072 0.928 49 H 0.063 0.937 50 H 0.074 0.926 51 H 0.028 0.972 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -11.151 -9.682 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.379 4.379 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.217 1.217 13 C 0.043 3.957 14 C -0.070 4.070 15 C -0.138 4.138 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.088 4.088 19 C -0.027 4.027 20 N -0.254 5.254 21 C -0.075 4.075 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.073 4.073 26 C -0.093 4.093 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.050 0.950 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.046 0.954 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.363 -10.484 -9.659 14.647 hybrid contribution 0.561 -1.409 0.720 1.679 sum 3.924 -11.892 -8.939 15.386 Atomic orbital electron populations 1.21725 0.97558 1.00242 1.00898 1.22189 0.93522 1.01091 1.01863 1.20901 0.85123 0.92988 0.98705 1.43747 0.99295 1.84293 1.02096 1.19039 1.02977 1.22899 0.92981 0.92208 1.25008 1.00544 0.95047 0.98260 1.69975 1.23601 1.16823 1.42312 0.86457 0.81873 0.78673 0.81295 1.20131 1.21201 1.21696 1.20136 1.00874 0.89025 0.85682 1.21233 0.92419 1.00206 0.93118 1.20983 0.98994 0.95341 0.98506 1.20890 0.97310 0.95587 1.01056 1.20691 0.95300 0.99346 1.00235 1.19562 0.94923 0.95621 0.98678 1.20981 0.89386 0.96404 0.95976 1.61877 1.01608 1.59888 1.02073 1.22163 0.99793 0.96506 0.89021 1.21586 0.94304 1.01961 0.97633 1.21573 0.97307 1.00090 0.96796 1.21582 0.97190 1.02046 0.94644 1.22083 0.89450 0.96700 0.99026 1.20909 0.97181 0.93058 0.98149 0.93518 0.93953 0.93340 0.92312 0.92693 0.93858 0.94811 0.93523 0.87391 0.95046 0.87316 0.87483 0.87847 0.94696 0.90092 0.95638 0.89802 0.90954 0.91904 0.92062 0.92628 0.90897 0.91840 0.90741 0.95366 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.15 -2.72 6.23 -26.73 -0.17 -2.89 16 3 C 0.15 3.13 5.72 -4.04 -0.02 3.11 16 4 N -0.58 -14.00 2.44 -174.61 -0.43 -14.43 16 5 C -0.25 -6.66 9.48 -15.06 -0.14 -6.81 16 6 H 0.06 1.63 7.93 -52.49 -0.42 1.21 16 7 C 0.01 0.30 4.95 -17.43 -0.09 0.22 16 8 N -0.88 -24.82 11.31 55.49 0.63 -24.19 16 9 Si 0.89 21.29 29.61 -169.99 -5.03 16.26 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C 0.17 3.92 5.46 -5.19 -0.03 3.89 16 14 C -0.07 -1.38 5.44 -104.62 -0.57 -1.95 16 15 C -0.12 -2.15 7.87 -39.58 -0.31 -2.46 16 16 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 17 C -0.14 -2.16 7.88 -39.58 -0.31 -2.47 16 18 C -0.09 -1.52 4.89 -104.62 -0.51 -2.03 16 19 C 0.10 1.52 5.12 -4.98 -0.03 1.49 16 20 N -0.53 -7.55 4.65 -236.11 -1.10 -8.65 16 21 C 0.05 0.67 5.16 -3.83 -0.02 0.65 16 22 C -0.12 -1.29 6.09 -26.65 -0.16 -1.46 16 23 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 24 C -0.12 -1.25 6.09 -26.65 -0.16 -1.41 16 25 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 26 C -0.07 -1.51 9.36 -39.58 -0.37 -1.88 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.11 6.13 -51.93 -0.32 0.79 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.11 2.85 5.26 -51.93 -0.27 2.57 16 36 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 37 H 0.11 1.84 8.02 -52.49 -0.42 1.42 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.10 1.41 7.95 -52.48 -0.42 0.99 16 40 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 41 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 42 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 1.16 5.75 -51.93 -0.30 0.86 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 50 H 0.07 0.92 8.02 -51.93 -0.42 0.51 16 51 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.12 2.67 8.06 -52.48 -0.42 2.25 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -27.74 401.39 -12.66 -40.40 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -9.68 Total: 3.56 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -3.10 Total: -18.98 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.90 Total: -47.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.74 -12.66 -40.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411276839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.090 kcal (2) G-P(sol) polarization free energy of solvation -27.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds