Wall clock time and date at job start Tue Mar 31 2020 11:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46974 * 2 1 4 4 N 1.46497 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99788 * 275.65132 * 4 3 2 6 6 H 1.08000 * 119.99764 * 33.99687 * 5 4 3 7 7 C 1.38808 * 120.00039 * 213.98802 * 5 4 3 8 8 N 1.31615 * 120.00141 * 22.96342 * 7 5 4 9 9 Si 1.86805 * 119.99966 * 202.96249 * 7 5 4 10 10 H 1.48497 * 109.47137 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47057 * 120.00252 * 9 7 5 12 12 H 1.48493 * 109.47012 * 240.00208 * 9 7 5 13 13 C 1.46498 * 120.00340 * 95.65747 * 4 3 2 14 14 C 1.50707 * 109.46919 * 269.99938 * 13 4 3 15 15 C 1.38251 * 119.99977 * 89.99669 * 14 13 4 16 16 C 1.38219 * 120.00066 * 180.02562 * 15 14 13 17 17 C 1.38255 * 119.99627 * 0.02562 * 16 15 14 18 18 C 1.38214 * 120.00381 * 359.95508 * 17 16 15 19 19 C 1.50698 * 120.00278 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47111 * 89.99823 * 19 18 17 21 21 C 1.46845 * 111.00022 * 294.21445 * 20 19 18 22 22 C 1.53041 * 109.52096 * 174.16163 * 21 20 19 23 23 C 1.53116 * 109.28001 * 59.17549 * 22 21 20 24 24 C 1.53118 * 109.15948 * 302.34401 * 23 22 21 25 25 C 1.46845 * 110.99733 * 169.99887 * 20 19 18 26 26 C 1.38213 * 119.99778 * 270.20558 * 14 13 4 27 27 H 1.08998 * 109.47242 * 59.99777 * 1 2 3 28 28 H 1.09003 * 109.47010 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47133 * 299.99797 * 1 2 3 30 30 H 1.09004 * 109.47133 * 240.00202 * 2 1 3 31 31 H 1.08995 * 109.47559 * 119.99810 * 2 1 3 32 32 H 1.09004 * 109.47025 * 60.00137 * 3 2 1 33 33 H 1.08995 * 109.46822 * 300.00261 * 3 2 1 34 34 H 0.97005 * 120.00089 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47233 * 150.00114 * 13 4 3 36 36 H 1.08997 * 109.46984 * 29.99909 * 13 4 3 37 37 H 1.07996 * 120.00192 * 0.02562 * 15 14 13 38 38 H 1.07996 * 120.00224 * 179.97438 * 16 15 14 39 39 H 1.08003 * 119.99901 * 179.97438 * 17 16 15 40 40 H 1.09004 * 109.46991 * 329.99907 * 19 18 17 41 41 H 1.08999 * 109.47158 * 209.99962 * 19 18 17 42 42 H 1.09000 * 109.45994 * 294.17362 * 21 20 19 43 43 H 1.08998 * 109.46805 * 54.14381 * 21 20 19 44 44 H 1.09001 * 109.50054 * 299.23535 * 22 21 20 45 45 H 1.08998 * 109.50246 * 179.11848 * 22 21 20 46 46 H 1.09002 * 109.52216 * 182.43829 * 23 22 21 47 47 H 1.08995 * 109.52119 * 62.25373 * 23 22 21 48 48 H 1.08990 * 109.50847 * 297.71237 * 24 23 22 49 49 H 1.09007 * 109.49899 * 177.59403 * 24 23 22 50 50 H 1.09000 * 109.46632 * 305.85466 * 25 20 19 51 51 H 1.09000 * 109.46134 * 65.83332 * 25 20 19 52 52 H 1.08004 * 120.00029 * 0.02585 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3257 1.1793 6 1 3.7888 0.7209 1.9790 7 6 5.4004 1.9843 1.3473 8 7 5.6810 3.0422 0.6163 9 14 6.6310 1.3691 2.6110 10 1 6.0802 0.1725 3.2965 11 1 7.9008 1.0086 1.9306 12 1 6.8903 2.4368 3.6098 13 6 4.2370 1.5679 -1.2634 14 6 4.4879 0.1969 -1.8366 15 6 3.5659 -0.3729 -2.6949 16 6 3.7958 -1.6305 -3.2202 17 6 4.9476 -2.3188 -2.8870 18 6 5.8696 -1.7491 -2.0293 19 6 7.1253 -2.4991 -1.6665 20 7 8.1860 -2.1727 -2.6290 21 6 7.8510 -2.6692 -3.9698 22 6 8.9031 -2.1873 -4.9713 23 6 10.2804 -2.7027 -4.5450 24 6 10.5841 -2.2114 -3.1269 25 6 9.4834 -2.6928 -2.1788 26 6 5.6378 -0.4926 -1.5010 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 6.5266 3.5027 0.7340 35 1 5.1895 2.0663 -1.0833 36 1 3.6476 2.1542 -1.9684 37 1 2.6660 0.1646 -2.9548 38 1 3.0754 -2.0758 -3.8903 39 1 5.1271 -3.3017 -3.2971 40 1 6.9286 -3.5709 -1.6923 41 1 7.4433 -2.2120 -0.6643 42 1 7.8321 -3.7590 -3.9591 43 1 6.8712 -2.2920 -4.2626 44 1 8.9130 -1.0975 -4.9925 45 1 8.6628 -2.5690 -5.9635 46 1 11.0388 -2.3259 -5.2313 47 1 10.2825 -3.7926 -4.5612 48 1 10.6204 -1.1221 -3.1191 49 1 11.5449 -2.6105 -2.8015 50 1 9.6891 -2.3325 -1.1709 51 1 9.4568 -3.7824 -2.1767 52 1 6.3563 -0.0490 -0.8275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411276839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:23 Heat of formation + Delta-G solvation = 15.645366 kcal Electronic energy + Delta-G solvation = -27562.483249 eV Core-core repulsion = 24139.793719 eV Total energy + Delta-G solvation = -3422.689529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69359 -39.46962 -37.73636 -35.01800 -34.67219 -33.07503 -31.94278 -31.65435 -31.43328 -27.51246 -27.26633 -27.12871 -24.18568 -23.93341 -23.79096 -22.45353 -21.82206 -21.15865 -20.58448 -18.61283 -17.29243 -17.06726 -16.89261 -16.38778 -16.05938 -15.92008 -15.61150 -15.38555 -15.25561 -14.89431 -14.83705 -14.47036 -14.31127 -14.18825 -13.79442 -13.56676 -13.36479 -13.18866 -13.08295 -12.98971 -12.81932 -12.66897 -12.56468 -12.43873 -12.15563 -12.14856 -11.99729 -11.85204 -11.70318 -11.58096 -11.55581 -11.34231 -11.26697 -11.17541 -10.51176 -9.53301 -9.40094 -9.15554 -8.59208 -7.82604 -5.40079 0.59240 0.71535 1.38974 1.43444 1.51902 2.48370 2.81397 3.20165 3.29044 3.79841 3.87436 3.89275 3.98444 4.03640 4.10921 4.26166 4.28863 4.30526 4.36376 4.40825 4.46051 4.51355 4.59738 4.62365 4.65250 4.67718 4.73583 4.79690 4.83205 4.85202 4.93978 4.98393 5.01552 5.04421 5.06922 5.20411 5.21243 5.26461 5.30053 5.32436 5.36807 5.46037 5.47161 5.62029 5.66896 5.69561 5.73418 5.84665 6.07278 6.12939 6.23247 6.32098 6.48371 7.16027 7.87455 8.37931 9.12665 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.004497 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.383183 B = 6225.374016 C = 7834.389112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.590 5.590 5 C -0.253 4.253 6 H 0.049 0.951 7 C -0.029 4.029 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.175 3.825 14 C -0.085 4.085 15 C -0.122 4.122 16 C -0.119 4.119 17 C -0.126 4.126 18 C -0.086 4.086 19 C 0.103 3.897 20 N -0.551 5.551 21 C 0.054 3.946 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.116 4.116 25 C 0.054 3.946 26 C -0.099 4.099 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.251 0.749 35 H 0.072 0.928 36 H 0.033 0.967 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.042 0.958 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 -14.184 -11.592 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.310 5.310 5 C -0.383 4.383 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.557 5.557 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.216 1.216 13 C 0.050 3.950 14 C -0.088 4.088 15 C -0.141 4.141 16 C -0.137 4.137 17 C -0.144 4.144 18 C -0.086 4.086 19 C -0.024 4.024 20 N -0.276 5.276 21 C -0.074 4.074 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.074 4.074 26 C -0.118 4.118 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.072 0.928 49 H 0.101 0.899 50 H 0.082 0.918 51 H 0.060 0.940 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.666 -13.533 -11.577 18.007 hybrid contribution 0.753 -0.487 1.245 1.534 sum 3.419 -14.020 -10.331 17.748 Atomic orbital electron populations 1.21655 0.94361 1.01759 1.01833 1.21989 0.96165 0.98540 1.00612 1.21023 0.83405 0.94854 0.98615 1.43928 1.00651 1.84661 1.01762 1.19117 1.03454 1.22089 0.93671 0.93309 1.25537 1.01805 0.95251 1.00047 1.70086 1.23696 1.17977 1.43965 0.85638 0.79897 0.78200 0.79430 1.19614 1.21542 1.21583 1.19889 0.98941 0.90732 0.85485 1.20920 0.93784 0.99004 0.95086 1.21072 0.98636 0.96408 0.97955 1.21288 0.97755 0.94360 1.00287 1.21049 0.94319 1.00391 0.98674 1.19751 0.96170 0.94400 0.98293 1.20892 0.88970 0.97017 0.95504 1.61838 1.02021 1.61013 1.02696 1.22183 0.99695 0.97211 0.88274 1.21591 0.94735 1.00806 0.98257 1.21557 0.96828 1.00787 0.96133 1.21588 0.97554 1.00955 0.95238 1.22133 0.88911 0.97416 0.98904 1.20705 0.96993 0.94897 0.99243 0.92000 0.92122 0.93041 0.92415 0.95024 0.95182 0.93538 0.93960 0.91025 0.94872 0.86179 0.83639 0.84512 0.92704 0.91865 0.94210 0.90994 0.92928 0.89956 0.90775 0.91340 0.92773 0.89945 0.91846 0.93979 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.91 71.98 0.71 -3.10 16 2 C -0.13 -4.85 6.23 30.60 0.19 -4.66 16 3 C 0.15 6.22 5.72 86.38 0.49 6.71 16 4 N -0.59 -29.79 2.44 -706.34 -1.73 -31.51 16 5 C -0.25 -14.11 9.48 84.03 0.80 -13.31 16 6 H 0.05 2.78 7.93 -2.91 -0.02 2.76 16 7 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 8 N -0.91 -53.94 11.31 21.65 0.24 -53.70 16 9 Si 0.94 45.75 29.61 68.60 2.03 47.78 16 10 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 13 C 0.18 8.54 5.46 85.64 0.47 9.01 16 14 C -0.09 -3.61 5.44 -19.87 -0.11 -3.72 16 15 C -0.12 -4.21 7.87 22.27 0.18 -4.03 16 16 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 17 C -0.13 -3.59 7.88 22.27 0.18 -3.42 16 18 C -0.09 -2.93 4.89 -19.87 -0.10 -3.03 16 19 C 0.10 3.09 5.12 85.56 0.44 3.53 16 20 N -0.55 -15.31 4.65 -900.92 -4.19 -19.50 16 21 C 0.05 1.25 5.16 86.33 0.45 1.69 16 22 C -0.12 -2.33 6.09 30.65 0.19 -2.15 16 23 C -0.12 -1.99 6.00 30.67 0.18 -1.80 16 24 C -0.12 -2.32 6.09 30.65 0.19 -2.13 16 25 C 0.05 1.26 5.46 86.33 0.47 1.73 16 26 C -0.10 -4.21 9.36 22.27 0.21 -4.00 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.06 2.10 6.13 -2.39 -0.01 2.09 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 1.33 8.09 -2.39 -0.02 1.31 16 33 H 0.05 1.83 7.83 -2.39 -0.02 1.81 16 34 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 35 H 0.07 4.05 5.26 -2.39 -0.01 4.04 16 36 H 0.03 1.53 7.80 -2.39 -0.02 1.51 16 37 H 0.12 3.83 8.02 -2.91 -0.02 3.80 16 38 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.14 3.06 7.95 -2.91 -0.02 3.03 16 40 H 0.05 1.40 8.07 -2.39 -0.02 1.39 16 41 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.82 5.75 -2.39 -0.01 1.80 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 50 H 0.06 1.59 8.02 -2.39 -0.02 1.57 16 51 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.08 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -63.31 401.39 2.78 -60.53 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.85 Total: 23.49 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 5.57 Total: -27.08 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -5.67 Total: -104.71 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -63.31 2.78 -60.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411276839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.170 kcal (2) G-P(sol) polarization free energy of solvation -63.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds