Wall clock time and date at job start Tue Mar 31 2020 11:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 N 1.46506 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.36940 * 119.99874 * 275.65949 * 4 3 2 6 6 H 1.07998 * 119.99851 * 33.99087 * 5 4 3 7 7 C 1.38812 * 119.99803 * 213.98462 * 5 4 3 8 8 N 1.31623 * 120.00071 * 22.95802 * 7 5 4 9 9 Si 1.86799 * 120.00274 * 202.95050 * 7 5 4 10 10 H 1.48507 * 109.46777 * 60.00312 * 9 7 5 11 11 H 1.48495 * 109.47131 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47180 * 300.00943 * 9 7 5 13 13 C 1.46494 * 119.99977 * 95.65845 * 4 3 2 14 14 C 1.50700 * 109.47231 * 270.00155 * 13 4 3 15 15 C 1.38238 * 119.99773 * 269.72601 * 14 13 4 16 16 C 1.38239 * 119.99892 * 179.76166 * 15 14 13 17 17 C 1.38233 * 119.99899 * 0.51351 * 16 15 14 18 18 C 1.50702 * 120.00131 * 179.72026 * 17 16 15 19 19 N 1.46898 * 109.47263 * 270.01826 * 18 17 16 20 20 C 1.46850 * 111.00171 * 294.21132 * 19 18 17 21 21 C 1.53033 * 109.52300 * 174.16016 * 20 19 18 22 22 C 1.53117 * 109.27957 * 59.17552 * 21 20 19 23 23 C 1.53115 * 109.16389 * 302.34906 * 22 21 20 24 24 C 1.46848 * 110.99852 * 169.99942 * 19 18 17 25 25 C 1.38239 * 120.00018 * 359.74122 * 17 16 15 26 26 C 1.38233 * 120.00160 * 90.00119 * 14 13 4 27 27 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46815 * 299.99994 * 1 2 3 29 29 H 1.09002 * 109.46937 * 59.99938 * 1 2 3 30 30 H 1.09006 * 109.46994 * 240.00311 * 2 1 3 31 31 H 1.08997 * 109.46983 * 120.00550 * 2 1 3 32 32 H 1.09002 * 109.47370 * 60.00464 * 3 2 1 33 33 H 1.08997 * 109.47623 * 300.00158 * 3 2 1 34 34 H 0.96990 * 120.00505 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47475 * 30.00056 * 13 4 3 36 36 H 1.09001 * 109.47252 * 150.00335 * 13 4 3 37 37 H 1.07999 * 120.00159 * 0.02562 * 15 14 13 38 38 H 1.07998 * 120.00371 * 180.22432 * 16 15 14 39 39 H 1.09001 * 109.47107 * 30.02490 * 18 17 16 40 40 H 1.09008 * 109.46914 * 150.02017 * 18 17 16 41 41 H 1.08998 * 109.45920 * 294.17174 * 20 19 18 42 42 H 1.08996 * 109.46394 * 54.14142 * 20 19 18 43 43 H 1.09002 * 109.50420 * 299.23885 * 21 20 19 44 44 H 1.09002 * 109.50635 * 179.12002 * 21 20 19 45 45 H 1.09008 * 109.52549 * 182.43967 * 22 21 20 46 46 H 1.08998 * 109.52165 * 62.25364 * 22 21 20 47 47 H 1.09005 * 109.49736 * 297.70777 * 23 22 21 48 48 H 1.09005 * 109.50363 * 177.59566 * 23 22 21 49 49 H 1.09002 * 109.46225 * 305.85620 * 24 19 18 50 50 H 1.08992 * 109.46360 * 65.82591 * 24 19 18 51 51 H 1.08003 * 120.00075 * 179.97438 * 25 17 16 52 52 H 1.08000 * 119.99926 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.3257 1.1811 6 1 3.7873 0.7211 1.9806 7 6 5.3995 1.9843 1.3499 8 7 5.6807 3.0420 0.6188 9 14 6.6289 1.3696 2.6149 10 1 7.0218 -0.0244 2.2865 11 1 7.8318 2.2401 2.5997 12 1 6.0100 1.4045 3.9643 13 6 4.2381 1.5674 -1.2616 14 6 4.4894 0.1963 -1.8343 15 6 5.6440 -0.4891 -1.5053 16 6 5.8722 -1.7489 -2.0268 17 6 4.9511 -2.3188 -2.8856 18 6 5.2029 -3.6895 -3.4591 19 7 5.9379 -3.5633 -4.7247 20 6 5.1184 -2.8971 -5.7450 21 6 5.9615 -2.6528 -6.9986 22 6 6.4799 -3.9926 -7.5283 23 6 7.2893 -4.6880 -6.4303 24 6 6.4077 -4.8733 -5.1931 25 6 3.7990 -1.6311 -3.2187 26 6 3.5682 -0.3736 -2.6931 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 6.5261 3.5024 0.7370 35 1 3.6493 2.1535 -1.9673 36 1 5.1904 2.0658 -1.0809 37 1 6.3656 -0.0422 -0.8376 38 1 6.7725 -2.2859 -1.7670 39 1 5.7917 -4.2758 -2.7537 40 1 4.2506 -4.1881 -3.6401 41 1 4.2675 -3.5297 -5.9973 42 1 4.7597 -1.9437 -5.3571 43 1 6.8052 -2.0089 -6.7500 44 1 5.3488 -2.1723 -7.7614 45 1 7.1165 -3.8196 -8.3961 46 1 5.6370 -4.6221 -7.8135 47 1 8.1539 -4.0761 -6.1728 48 1 7.6252 -5.6617 -6.7870 49 1 6.9854 -5.3553 -4.4044 50 1 5.5508 -5.4967 -5.4480 51 1 3.0795 -2.0762 -3.8900 52 1 2.6686 0.1640 -2.9539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411279241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:25 Heat of formation + Delta-G solvation = 15.615849 kcal Electronic energy + Delta-G solvation = -27202.087006 eV Core-core repulsion = 23779.396197 eV Total energy + Delta-G solvation = -3422.690809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67755 -39.46193 -37.75121 -35.05844 -34.61559 -32.94387 -31.91555 -31.70786 -31.36487 -28.45787 -27.32735 -26.07697 -24.12152 -23.96443 -23.33521 -22.93437 -21.84494 -21.34385 -20.55176 -18.68577 -17.19536 -17.01310 -16.70188 -16.36311 -16.04905 -15.90081 -15.64932 -15.35350 -15.24798 -14.91431 -14.82112 -14.40817 -14.22190 -14.15274 -14.11110 -13.55913 -13.37714 -13.22104 -12.99498 -12.95950 -12.78059 -12.61805 -12.58470 -12.39155 -12.17009 -12.09594 -11.95966 -11.86170 -11.73486 -11.57426 -11.53665 -11.32415 -11.24455 -11.16187 -10.49956 -9.62082 -9.37518 -9.11283 -8.58853 -7.82339 -5.39934 0.59798 0.67470 1.42621 1.46086 1.52100 2.49601 2.81973 3.21511 3.29460 3.85049 3.87143 3.92799 3.99469 4.07003 4.10816 4.25120 4.28113 4.32635 4.35633 4.39216 4.49671 4.51066 4.63452 4.67095 4.69104 4.70255 4.76019 4.81685 4.82486 4.89240 4.96760 4.98168 4.98429 5.07728 5.09965 5.19724 5.24645 5.25846 5.30701 5.32530 5.33737 5.45528 5.49798 5.61226 5.65505 5.68239 5.75950 5.80692 6.08295 6.14905 6.24196 6.31098 6.48165 7.16234 7.87404 8.38071 9.12943 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.003518 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.478822 B = 7956.386273 C = 9019.456770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.146 3.854 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.049 0.951 7 C -0.030 4.030 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.174 3.826 14 C -0.081 4.081 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.093 4.093 18 C 0.106 3.894 19 N -0.546 5.546 20 C 0.052 3.948 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.115 4.115 24 C 0.054 3.946 25 C -0.111 4.111 26 C -0.120 4.120 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.252 0.748 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.036 0.964 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.037 0.963 51 H 0.135 0.865 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -15.633 -15.187 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.310 5.310 5 C -0.387 4.387 6 H 0.067 0.933 7 C -0.227 4.227 8 N -0.557 5.557 9 Si 0.772 3.228 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.202 1.202 13 C 0.048 3.952 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.125 4.125 17 C -0.094 4.094 18 C -0.021 4.021 19 N -0.271 5.271 20 C -0.076 4.076 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.138 4.138 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.055 0.945 51 H 0.152 0.848 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.045 -15.196 -15.078 21.504 hybrid contribution 0.260 -0.197 1.031 1.081 sum -1.785 -15.392 -14.047 20.915 Atomic orbital electron populations 1.21653 0.94379 1.01740 1.01837 1.21989 0.96154 0.98569 1.00602 1.21022 0.83429 0.94822 0.98627 1.43915 1.00634 1.84671 1.01764 1.19081 1.03630 1.22324 0.93715 0.93294 1.25572 1.01818 0.95187 1.00147 1.70076 1.23824 1.17837 1.43992 0.85715 0.79232 0.77925 0.79960 1.20766 1.21619 1.20191 1.19916 0.99067 0.90676 0.85520 1.20913 0.93650 0.99026 0.94824 1.20951 0.97727 0.95762 0.99724 1.21001 0.99208 0.94616 0.97691 1.19697 0.94644 0.96941 0.98084 1.20900 0.97354 0.92483 0.91319 1.61886 1.40097 1.21939 1.03202 1.22161 0.94347 0.98993 0.92080 1.21581 0.99699 0.98071 0.96101 1.21570 0.99916 0.95986 0.98064 1.21583 0.98156 1.01216 0.94302 1.22150 0.98300 0.88895 0.97962 1.21083 0.97325 0.94443 1.00053 1.21006 0.98711 0.96129 0.97999 0.92156 0.93011 0.92020 0.92485 0.94982 0.95176 0.93521 0.93871 0.94791 0.90827 0.89501 0.86110 0.89734 0.93280 0.94537 0.91462 0.92657 0.90706 0.91013 0.91716 0.92259 0.89960 0.90486 0.94464 0.84755 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.13 -4.83 6.23 30.59 0.19 -4.64 16 3 C 0.15 6.19 5.72 86.38 0.49 6.68 16 4 N -0.59 -29.60 2.44 -706.34 -1.73 -31.32 16 5 C -0.26 -14.26 9.48 84.03 0.80 -13.46 16 6 H 0.05 2.76 7.93 -2.91 -0.02 2.74 16 7 C -0.03 -1.67 4.95 84.86 0.42 -1.25 16 8 N -0.91 -53.33 11.31 21.65 0.24 -53.09 16 9 Si 0.94 45.21 29.61 68.60 2.03 47.24 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 C 0.17 8.38 5.46 85.63 0.47 8.85 16 14 C -0.08 -3.41 5.44 -19.87 -0.11 -3.52 16 15 C -0.12 -5.20 9.70 22.27 0.22 -4.98 16 16 C -0.11 -3.75 9.70 22.27 0.22 -3.53 16 17 C -0.09 -2.76 4.89 -19.86 -0.10 -2.86 16 18 C 0.11 2.47 5.12 85.56 0.44 2.91 16 19 N -0.55 -12.10 4.65 -900.94 -4.19 -16.29 16 20 C 0.05 1.09 5.16 86.32 0.45 1.53 16 21 C -0.12 -2.13 6.09 30.64 0.19 -1.94 16 22 C -0.12 -1.73 6.00 30.67 0.18 -1.54 16 23 C -0.11 -1.75 6.09 30.64 0.19 -1.56 16 24 C 0.05 0.94 5.46 86.33 0.47 1.41 16 25 C -0.11 -3.25 7.88 22.27 0.18 -3.08 16 26 C -0.12 -4.15 7.87 22.27 0.18 -3.97 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 2.07 6.13 -2.38 -0.01 2.06 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 33 H 0.05 1.82 7.83 -2.39 -0.02 1.80 16 34 H 0.25 14.29 8.31 -92.72 -0.77 13.52 16 35 H 0.03 1.55 7.80 -2.38 -0.02 1.53 16 36 H 0.07 4.09 5.25 -2.39 -0.01 4.08 16 37 H 0.09 4.13 8.06 -2.91 -0.02 4.11 16 38 H 0.12 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.08 1.86 7.93 -2.39 -0.02 1.84 16 40 H 0.05 1.02 8.07 -2.38 -0.02 1.01 16 41 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.64 5.75 -2.39 -0.01 1.62 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 49 H 0.08 1.26 8.02 -2.39 -0.02 1.25 16 50 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 51 H 0.13 3.17 7.95 -2.91 -0.02 3.14 16 52 H 0.12 3.85 8.02 -2.91 -0.02 3.83 16 Total: -1.00 -61.69 401.39 2.78 -58.91 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.85 Total: 22.62 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 5.57 Total: -28.06 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -5.67 Total: -100.70 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -61.69 2.78 -58.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411279241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.521 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds