Wall clock time and date at job start Tue Mar 31 2020 11:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46910 * 109.46761 * 2 1 4 4 C 1.46893 * 110.99844 * 298.61143 * 3 2 1 5 5 C 1.50697 * 109.47460 * 288.68226 * 4 3 2 6 6 H 1.08004 * 119.99781 * 0.24320 * 5 4 3 7 7 C 1.37880 * 120.00204 * 180.25053 * 5 4 3 8 8 N 1.31511 * 119.99979 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00133 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46877 * 90.00254 * 9 7 5 11 11 H 1.48494 * 109.47455 * 210.00472 * 9 7 5 12 12 H 1.48504 * 109.47014 * 330.00829 * 9 7 5 13 13 C 1.46901 * 110.99805 * 62.56558 * 3 2 1 14 14 C 1.50701 * 109.47071 * 66.04699 * 13 3 2 15 15 C 1.38250 * 120.00191 * 89.99613 * 14 13 3 16 16 C 1.38217 * 120.00026 * 180.02562 * 15 14 13 17 17 C 1.38247 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.38219 * 119.99623 * 359.95348 * 17 16 15 19 19 C 1.50705 * 119.99852 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.46678 * 90.00427 * 19 18 17 21 21 C 1.46847 * 110.99537 * 294.20591 * 20 19 18 22 22 C 1.53044 * 109.52136 * 174.16255 * 21 20 19 23 23 C 1.53119 * 109.27565 * 59.17980 * 22 21 20 24 24 C 1.53121 * 109.16418 * 302.34627 * 23 22 21 25 25 C 1.46843 * 110.99832 * 170.00204 * 20 19 18 26 26 C 1.38215 * 119.99996 * 270.20886 * 14 13 3 27 27 H 1.09004 * 109.46812 * 182.69318 * 1 2 3 28 28 H 1.08994 * 109.47194 * 302.68979 * 1 2 3 29 29 H 1.08999 * 109.47174 * 62.69755 * 1 2 3 30 30 H 1.08999 * 109.47259 * 240.00394 * 2 1 3 31 31 H 1.08997 * 109.47093 * 119.99781 * 2 1 3 32 32 H 1.09000 * 109.47333 * 48.68559 * 4 3 2 33 33 H 1.09001 * 109.47107 * 168.68186 * 4 3 2 34 34 H 0.96995 * 120.00246 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47210 * 306.04703 * 13 3 2 36 36 H 1.08997 * 109.46980 * 186.04166 * 13 3 2 37 37 H 1.08003 * 120.00375 * 0.02562 * 15 14 13 38 38 H 1.08010 * 119.99968 * 179.97438 * 16 15 14 39 39 H 1.07996 * 120.00529 * 179.97438 * 17 16 15 40 40 H 1.08993 * 109.47168 * 330.00718 * 19 18 17 41 41 H 1.09000 * 109.47062 * 209.99957 * 19 18 17 42 42 H 1.08994 * 109.46886 * 294.17496 * 21 20 19 43 43 H 1.09001 * 109.46579 * 54.14979 * 21 20 19 44 44 H 1.09007 * 109.50210 * 299.24312 * 22 21 20 45 45 H 1.08990 * 109.50496 * 179.12268 * 22 21 20 46 46 H 1.09007 * 109.52219 * 182.44491 * 23 22 21 47 47 H 1.09000 * 109.52386 * 62.25114 * 23 22 21 48 48 H 1.09007 * 109.50448 * 297.71553 * 24 23 22 49 49 H 1.08994 * 109.50757 * 177.59578 * 24 23 22 50 50 H 1.09005 * 109.46250 * 305.85041 * 25 20 19 51 51 H 1.08998 * 109.46641 * 65.81769 * 25 20 19 52 52 H 1.08009 * 120.00084 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5759 2.1003 -1.2039 5 6 2.3229 1.5765 -2.4034 6 1 3.0514 0.7882 -2.2838 7 6 2.0765 2.1038 -3.6533 8 7 2.7280 1.6464 -4.7001 9 14 0.8161 3.4670 -3.8601 10 1 1.4833 4.7850 -3.7086 11 1 0.2037 3.3744 -5.2096 12 1 -0.2404 3.3253 -2.8262 13 6 1.5993 2.0920 1.2172 14 6 2.2728 1.4736 2.4151 15 6 3.4993 1.9491 2.8406 16 6 4.1173 1.3815 3.9389 17 6 3.5093 0.3381 4.6119 18 6 2.2828 -0.1369 4.1868 19 6 1.6202 -1.2747 4.9200 20 7 0.7661 -0.7376 5.9879 21 6 1.5706 -0.0713 7.0200 22 6 0.6440 0.5996 8.0367 23 6 -0.2601 -0.4600 8.6727 24 6 -1.0511 -1.1722 7.5719 25 6 -0.0754 -1.7915 6.5688 26 6 1.6665 0.4283 3.0859 27 1 -0.3633 -1.0266 0.0483 28 1 -0.3633 0.5550 0.8648 29 1 -0.3633 0.4714 -0.9132 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5064 1.9446 -1.3455 33 1 1.7757 3.1655 -1.0881 34 1 2.5544 2.0171 -5.5794 35 1 0.5177 2.0136 1.3278 36 1 1.8819 3.1421 1.1434 37 1 3.9747 2.7639 2.3147 38 1 5.0757 1.7527 4.2711 39 1 3.9923 -0.1056 5.4699 40 1 2.3833 -1.9199 5.3551 41 1 1.0115 -1.8506 4.2230 42 1 2.1933 -0.8081 7.5272 43 1 2.2059 0.6826 6.5549 44 1 0.0305 1.3464 7.5326 45 1 1.2411 1.0808 8.8111 46 1 -0.9514 0.0195 9.3658 47 1 0.3510 -1.1855 9.2097 48 1 -1.6913 -0.4532 7.0605 49 1 -1.6650 -1.9567 8.0143 50 1 -0.6356 -2.2872 5.7759 51 1 0.5551 -2.5204 7.0780 52 1 0.7100 0.0543 2.7512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411305583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:54 Heat of formation + Delta-G solvation = 24.841540 kcal Electronic energy + Delta-G solvation = -26875.306300 eV Core-core repulsion = 23453.015547 eV Total energy + Delta-G solvation = -3422.290753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.91854 -38.77300 -37.04813 -34.27203 -32.62206 -31.57161 -31.01895 -30.86013 -29.62893 -27.51515 -26.39744 -24.84587 -23.39521 -23.22115 -22.80813 -21.67377 -20.42197 -19.93454 -19.02260 -16.73048 -16.37484 -16.25145 -15.71917 -15.28787 -15.08796 -14.87794 -14.69884 -14.39540 -14.28855 -13.96008 -13.67970 -13.49672 -13.06740 -13.02326 -12.70652 -12.57347 -12.39762 -12.08477 -12.00239 -11.98384 -11.58304 -11.47953 -11.37385 -11.14811 -10.99589 -10.93258 -10.81508 -10.67413 -10.54744 -10.46963 -10.35132 -9.94074 -9.84864 -9.26724 -8.65199 -8.56586 -8.52342 -8.34549 -7.25841 -6.01929 -3.98227 1.52438 1.60874 3.29592 3.37201 3.38669 3.61902 4.09161 4.44146 4.52315 4.55008 4.64055 4.75940 4.89322 4.98081 5.03870 5.11798 5.14350 5.22898 5.25451 5.30006 5.32182 5.33787 5.42877 5.48099 5.59749 5.62742 5.64175 5.69996 5.73611 5.76736 5.84245 5.84779 5.91167 5.92265 6.01611 6.09050 6.09580 6.22884 6.30804 6.41466 6.52700 6.65204 6.69574 6.80886 6.85815 6.91813 6.94551 6.98807 7.09395 7.22103 7.65130 7.94760 8.09310 8.70424 9.08364 9.60133 11.11472 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002714 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.176237 B =10315.039312 C =10744.586901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.057 3.943 3 N -0.518 5.518 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.082 3.918 14 C -0.060 4.060 15 C -0.097 4.097 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.084 4.084 19 C 0.098 3.902 20 N -0.532 5.532 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.055 3.945 26 C -0.091 4.091 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.060 0.940 32 H -0.003 1.003 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.038 0.962 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.039 0.961 41 H 0.082 0.918 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.030 0.970 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 -4.773 26.635 27.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.240 5.240 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.046 4.046 14 C -0.061 4.061 15 C -0.116 4.116 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.085 4.085 19 C -0.029 4.029 20 N -0.256 5.256 21 C -0.076 4.076 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.073 4.073 26 C -0.110 4.110 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.015 0.985 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.049 0.951 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.404 -4.418 26.208 26.940 hybrid contribution -0.928 0.167 0.040 0.944 sum -5.332 -4.250 26.248 27.119 Atomic orbital electron populations 1.22422 0.99607 1.01093 1.01814 1.22045 0.91813 0.91164 1.02079 1.62220 1.59062 1.01871 1.00893 1.20265 0.94541 0.93734 0.88357 1.21021 1.22618 1.21139 0.89356 0.90206 1.24890 0.95945 0.96652 0.95900 1.69890 1.42114 1.42951 0.99164 0.86901 0.82456 0.83107 0.77529 1.20209 1.21276 1.19282 1.21135 0.96573 0.97924 0.88968 1.19893 0.94932 0.95646 0.95595 1.21057 0.94569 1.00113 0.95888 1.21033 0.99707 0.97007 0.96355 1.20880 0.95461 0.97839 1.00025 1.19528 0.94821 0.97879 0.96233 1.20990 0.94939 0.93871 0.93139 1.61912 1.23260 1.29193 1.11261 1.22183 0.95025 0.98172 0.92250 1.21585 0.98132 0.98187 0.97585 1.21584 0.98562 0.98155 0.97599 1.21582 0.97698 1.00092 0.96086 1.22089 0.95389 0.92418 0.97358 1.20890 0.99530 0.95747 0.94808 0.93122 0.93451 0.91744 0.89851 0.92201 0.98497 0.96159 0.92740 0.94434 0.90698 0.86015 0.86495 0.87089 0.94245 0.89973 0.95335 0.89894 0.91039 0.91742 0.91944 0.92486 0.90994 0.91690 0.90711 0.95142 0.86391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.11 37.16 0.34 -2.91 16 2 C 0.06 1.09 5.54 -3.82 -0.02 1.07 16 3 N -0.52 -10.78 4.65 -237.52 -1.11 -11.89 16 4 C 0.16 3.78 3.64 -4.98 -0.02 3.76 16 5 C -0.50 -14.29 9.12 -34.44 -0.31 -14.60 16 6 H 0.08 2.49 7.70 -52.48 -0.40 2.09 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 9 Si 0.87 21.53 27.46 -169.99 -4.67 16.86 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.35 6.55 56.52 0.37 -5.98 16 13 C 0.08 1.42 4.91 -4.98 -0.02 1.39 16 14 C -0.06 -0.93 4.89 -104.63 -0.51 -1.44 16 15 C -0.10 -1.41 9.70 -39.58 -0.38 -1.80 16 16 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 17 C -0.12 -1.46 7.88 -39.58 -0.31 -1.77 16 18 C -0.08 -1.04 4.89 -104.62 -0.51 -1.55 16 19 C 0.10 1.02 5.12 -4.97 -0.03 0.99 16 20 N -0.53 -5.33 4.65 -236.11 -1.10 -6.43 16 21 C 0.05 0.48 5.16 -3.83 -0.02 0.46 16 22 C -0.12 -0.95 6.09 -26.65 -0.16 -1.11 16 23 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 24 C -0.12 -0.87 6.09 -26.65 -0.16 -1.04 16 25 C 0.06 0.47 5.46 -3.84 -0.02 0.44 16 26 C -0.09 -1.27 7.57 -39.58 -0.30 -1.57 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.74 5.59 -51.93 -0.29 0.45 16 29 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 30 H 0.08 1.80 7.20 -51.93 -0.37 1.43 16 31 H 0.06 1.05 5.97 -51.93 -0.31 0.74 16 32 H 0.00 -0.06 4.96 -51.93 -0.26 -0.32 16 33 H 0.02 0.49 7.24 -51.93 -0.38 0.12 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.04 0.63 5.97 -51.93 -0.31 0.32 16 36 H 0.07 1.28 7.81 -51.93 -0.41 0.87 16 37 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.11 1.10 7.95 -52.49 -0.42 0.68 16 40 H 0.04 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.84 5.75 -51.93 -0.30 0.55 16 44 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 51 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 52 H 0.12 1.64 7.20 -52.48 -0.38 1.26 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -30.39 389.59 -12.54 -42.93 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.21 Total: 0.42 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -3.10 Total: -20.78 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -1.43 Total: -45.30 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.39 -12.54 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411305583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.773 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds